[ 原始碼： nanopolish ]
套件：nanopolish（0.14.0-1 以及其他的）
consensus caller for nanopore sequencing data
Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.
其他與 nanopolish 有關的套件
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- dep: libc6 (>= 2.38)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.5)
- GCC 支援函式庫
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libhdf5-310 (>= 1.14.3)
- HDF5 C runtime files - serial version
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- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
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- dep: libslow5-0t64 (>= 0.5.1)
- library for reading & writing SLOW5 files
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- dep: libstdc 6 (>= 14)
- GNU Standard C Library v3
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- dep: libstreamvbyte0 (>= 0.4.1)
- fast integer compression in C using the StreamVByte codec
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.2.3.3)
- 壓縮函式庫 - 跑程式時用(runtime)
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- rec: python3-biopython
- Python3 library for bioinformatics
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- rec: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)