[ 原始碼： trinityrnaseq ]
套件：trinityrnaseq（2.6.6 dfsg-6）
trinityrnaseq 的相關連結
Debian 的資源：
下載原始碼套件 trinityrnaseq：
- [trinityrnaseq_2.6.6 dfsg-6.dsc]
- [trinityrnaseq_2.6.6 dfsg.orig.tar.xz]
- [trinityrnaseq_2.6.6 dfsg-6.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [trinityrnaseq.github.io]
相似套件：
RNA-Seq De novo Assembly
Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes.
其他與 trinityrnaseq 有關的套件
|
|
|
|
-
- dep: berkeley-express
- Streaming quantification for high-throughput sequencing
-
- dep: bowtie
- Ultrafast memory-efficient short read aligner
-
- dep: bowtie2
- ultrafast memory-efficient short read aligner
-
- dep: curl
- command line tool for transferring data with URL syntax
-
- dep: default-jre-headless
- Standard Java or Java compatible Runtime (headless)
-
- dep: jaligner
- Smith-Waterman algorithm with Gotoh's improvement
-
- dep: jellyfish
- count k-mers in DNA sequences
-
- dep: libc6 (>= 2.27)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
-
- dep: libcommons-collections4-java
- Apache Commons Collections - Extended Collections API for Java
-
- dep: libgcc1 (>= 1:3.0)
- GCC 支援函式庫
-
- dep: libgetopt-java
- GNU getopt - Java port
-
- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
-
- dep: libhts2 (>= 1.0)
- C library for high-throughput sequencing data formats
-
- dep: libjung-free-java
- Java Universal Network/Graph Framework
-
- dep: libstdc 6 (>= 5.2)
- GNU Standard C Library v3
-
- dep: libwww-perl
- simple and consistent interface to the world-wide web
-
- dep: ncbi-blast
- next generation suite of BLAST sequence search tools
-
- dep: parafly
- parallel command processing using OpenMP
-
- dep: perl
- Larry Wall's Practical Extraction and Report Language
-
- dep: python3-numpy
- Fast array facility to the Python 3 language
-
- dep: r-base-core
- GNU R core of statistical computation and graphics system
-
- dep: r-bioc-qvalue
- GNU R package for Q-value estimation for FDR control
-
- dep: r-cran-cluster
- GNU R package for cluster analysis by Rousseeuw et al
-
- dep: rsem
- RNA-Seq by Expectation-Maximization
-
- dep: salmon
- wicked-fast transcript quantification from RNA-seq data
-
- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- dep: transdecoder
- find coding regions within RNA transcript sequences
-
- dep: trimmomatic
- flexible read trimming tool for Illumina NGS data
-
- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)
-
- rec: trinityrnaseq-examples
- RNA-Seq De novo Assembly common example and testing files
-
- sug: collectl
- Utility to collect Linux performance data