[ 原始碼： srst2 ]
套件：srst2（0.2.0-6）
Short Read Sequence Typing for Bacterial Pathogens
This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.
其他與 srst2 有關的套件
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: cd-hit
- suite of programs designed to quickly group sequences
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- dep: python
- interactive high-level object-oriented language (Python2 version)
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- dep: python-biopython
- Python library for bioinformatics (implemented in Python 2)
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- dep: python-scipy
- scientific tools for Python
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: python-rpy2
- Python 2 interface to the GNU R language and environment (version 2.8)