套件：clonalframe（1.2-9）
clonalframe 的相關連結
Debian 的資源：
下載原始碼套件 clonalframe：
維護小組：
外部的資源：
- 主頁 [www.xavierdidelot.xtreemhost.com]
相似套件：
inference of bacterial microevolution using multilocus sequence data
ClonalFrame identifies the clonal relationships between the members of a sample, while also estimating the chromosomal position of homologous recombination events that have disrupted the clonal inheritance.
ClonalFrame can be applied to any kind of sequence data, from a single fragment of DNA to whole genomes. It is well suited for the analysis of MLST data, where 7 gene fragments have been sequenced, but becomes progressively more powerful as the sequenced regions increase in length and number up to whole genomes. However, it requires the sequences to be aligned. If you have genomic data that is not aligned, it is recommend to use Mauve which produces alignment of whole bacterial genomes in exactly the format required for analysis with ClonalFrame.
其他與 clonalframe 有關的套件
|
|
|
|
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
- dep: libc6 (>= 2.17) [arm64]
- dep: libc6 (>= 2.4) [armhf, i386]
-
- dep: libgcc1 (>= 1:3.0) [除 armhf]
- GCC 支援函式庫
- dep: libgcc1 (>= 1:3.5) [armhf]
-
- dep: libgsl23 (>= 2.5)
- GNU Scientific Library (GSL) -- library package
-
- dep: libgslcblas0 (>= 2.4)
- GNU Scientific Library (GSL) -- blas library package
-
- dep: libstdc 6 (>= 5.2)
- GNU Standard C Library v3
-
- sug: clonalframeml
- Efficient Inference of Recombination in Whole Bacterial Genomes