[ 原始碼： bowtie2 ]
套件：bowtie2（2.4.2-2 以及其他的）
ultrafast memory-efficient short read aligner
is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.
Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
其他與 bowtie2 有關的套件
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- dep: libc6 (>= 2.29)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [除 amd64]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.4) [amd64]
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- dep: libstdc 6 (>= 9)
- GNU Standard C Library v3
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- dep: libtbb2 (>= 2017~U7) [amd64]
- parallelism library for C - runtime files
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.2.6)
- 壓縮函式庫 - 跑程式時用(runtime)
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- sug: bowtie2-examples
- Examples for bowtie2