[ 原始碼： ssake ]
套件：ssake（4.0-3）
genomics application for assembling millions of very short DNA sequences
The Short Sequence Assembly by K-mer search and 3′ read Extension (SSAKE) is a genomics application for aggressively assembling millions of short nucleotide sequences by progressively searching for perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to help leverage the information from short sequences reads by stringently clustering them into contigs that can be used to characterize novel sequencing targets.
其他與 ssake 有關的套件
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- dep: libperl4-corelibs-perl
- libraries historically supplied with Perl 4
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- sug: ssake-examples
- example data for SSAKE, a genomic assembler of short reads