[ 原始碼： ska ]
套件：ska（1.0 dfsg-2）
Split Kmer Analysis
SKA (Split Kmer Analysis) is a toolkit for prokaryotic (and any other small, haploid) DNA sequence analysis using split kmers. A split kmer is a pair of kmers in a DNA sequence that are separated by a single base. Split kmers allow rapid comparison and alignment of small genomes, and is particulalry suited for surveillance or outbreak investigation. SKA can produce split kmer files from fasta format assemblies or directly from fastq format read sequences, cluster them, align them with or without a reference sequence and provide various comparison and summary statistics. Currently all testing has been carried out on high-quality Illumina read data, so results for other platforms may vary.
其他與 ska 有關的套件
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- dep: libc6 (>= 2.34)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [arm64, ppc64el, s390x]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.4) [amd64, mips64el]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386, mipsel]
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- dep: libstdc 6 (>= 11)
- GNU Standard C Library v3
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- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)
下載 ska
| 硬體架構 | 套件大小 | 安裝後大小 | 檔案 |
|---|---|---|---|
| amd64 | 130。9 kB | 377。0 kB | [檔案列表] |
| arm64 | 112。3 kB | 337。0 kB | [檔案列表] |
| armel | 111。1 kB | 336。0 kB | [檔案列表] |
| armhf | 116。6 kB | 272。0 kB | [檔案列表] |
| i386 | 137。1 kB | 412。0 kB | [檔案列表] |
| mips64el | 114。8 kB | 449。0 kB | [檔案列表] |
| mipsel | 117。6 kB | 443。0 kB | [檔案列表] |
| ppc64el | 129。4 kB | 465。0 kB | [檔案列表] |
| s390x | 117。7 kB | 385。0 kB | [檔案列表] |