软件包：fastahack（1.0.0 dfsg-11 以及其他的） [debports]
utility for indexing and sequence extraction from FASTA files
fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.
Features:
* FASTA index (.fai) generation for FASTA files * Sequence extraction * Subsequence extraction * Sequence statistics (currently only entropy is provided)
Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.
其他与 fastahack 有关的软件包
|
|
|
|
-
- dep: libc6 (>= 2.38)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
-
- dep: libdisorder0 (>= 0.0.2)
- library for entropy measurement of byte streams
-
- dep: libfastahack0 (>= 0.0 git20160702.bbc645f)
- library for indexing and sequence extraction from FASTA files (lib)
-
- dep: libgcc-s1 (>= 3.0)
- GCC 支持库
-
- dep: libstdc 6 (>= 13.1)
- GNU 标准 C 库，第3版