属于 "sid" 发行版 science 子版面的软件包
- 3depict (0.0.23-2 b6 [armel, armhf], 0.0.23-2 b5 [riscv64], 0.0.23-2 b4 [amd64, arm64, hppa, i386, mips64el, ppc64, ppc64el, s390x], 0.0.23-2 [alpha, m68k, sh4, sparc64, x32])
- 单值数据点的可视化处理和分析工具
- abacas (1.3.1-9)
- close gaps in genomic alignments from short reads
- abacas-examples (1.3.1-9)
- sample data for abacas to close gaps in genomic alignments
- abinit (9.10.4-3 b2 [amd64, arm64, mips64el, ppc64el, riscv64, s390x], 9.10.4-3 b1 [alpha, m68k, ppc64, sparc64], 9.10.4-3 [hppa, sh4], 8.10.3-3 [ia64, x32])
- package for electronic structure calculations
- abpoa (1.5.3-1 b2)
- adaptive banded Partial Order Alignment
- abyss (2.3.10-1 b1 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64], 2.3.5 dfsg-2 [alpha, ia64, x32], 2.3.3-2 [m68k, sh4], 2.2.2-1 [sparc64], 2.1.0-1 [hppa])
- de novo, parallel, sequence assembler for short reads
- acedb-other (4.9.39 dfsg.02-9 b1 [riscv64], 4.9.39 dfsg.02-9 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- retrieval of DNA or protein sequences
- aces3 (3.0.8-9 b1 [ia64], 3.0.8-9 [riscv64]) [debports]
- Advanced Concepts in Electronic Structure III
- achilles (2-13 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2-12 b1 [ia64])
- Artificial life and evolution simulator
- adapterremoval (2.3.3-3 b1 [arm64], 2.3.3-3 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.3.3-2 [ia64])
- rapid adapter trimming, identification, and read merging of gene sequences
- adapterremoval-examples (2.3.3-3)
- rapid adapter trimming, identification, and read merging (example data)
- adms (2.3.7-1 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 2.3.7-1 b1 [hppa, m68k, ppc64, sh4, sparc64, x32], 2.3.7-1 [alpha, ia64])
- Automatic device model synthesizer for Verilog-AMS
- adun-core (0.81-14 b8 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, s390x], 0.81-14 b7 [alpha, hppa, m68k, ppc64, sh4, sparc64, x32], 0.81-14 b5 [riscv64], 0.81-14 b4 [ia64])
- Molecular Simulator
- aegean (0.16.0 dfsg-4 b1 [arm64], 0.16.0 dfsg-4 [amd64, armel, armhf, i386, ppc64, ppc64el, s390x, x32], 0.15.1 dfsg-1 [hppa], 0.14.1 dfsg2-2 [m68k], 0.14.1 dfsg-1 [alpha])
- integrated genome analysis toolkit
- aevol (5.0 ds-4 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 5.0 ds-3 b1 [ia64])
- digital genetics model to run Evolution Experiments in silico
- aghermann (1.1.2-5 b3 [riscv64], 1.1.2-5 b2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32], 1.1.2-5 b1 [ia64])
- Sleep-research experiment manager
- aladin (12.060 dfsg-3)
- Interactive sky atlas for astronomical images and datasets
- alfa (2.2-1 b3 [alpha, arm64], 2.2-1 b2 [amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Automated Line Fitting Algorithm
- algotutor (0.8.6-6)
- program for observing the intermediate steps of algorithm
- alien-hunter (1.7-10)
- Interpolated Variable Order Motifs to identify horizontally acquired DNA
- allelecount (4.3.0-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 4.3.0-2 b1 [ia64])
- NGS copy number algorithms
- altree (1.3.2-2 b5 [riscv64], 1.3.2-2 b4 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32], 1.3.2-2 b2 [ia64])
- program to perform phylogeny-based association and localization analysis
- altree-examples (1.3.2-2)
- example files for ALTree
- amap-align (2.2 git20080214.600fc29 dfsg-2 b1 [arm64, riscv64], 2.2 git20080214.600fc29 dfsg-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Protein multiple alignment by sequence annealing
- ampliconnoise (1.29-15 b1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.29-15 [armel, armhf, hppa, i386, m68k, sh4, x32], 1.29-11 [ia64])
- removal of noise from 454 sequenced PCR amplicons
- andi (0.14-3 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.14-3 [ia64])
- Efficient Estimation of Evolutionary Distances
- anfo (0.98-9)
- Short Read Aligner/Mapper from MPG
- ants (2.4.3 dfsg-1 [amd64], 1.9.2 svn680.dfsg-4 [alpha, ppc64, x32], 1.9 svn532-5 [hppa])
- advanced normalization tools for brain and image analysis
- any2fasta (0.4.2-2)
- convert various sequence formats to FASTA
- any2fasta-examples (0.4.2-2)
- convert various sequence formats to FASTA (example data)
- aoflagger (3.4.0-3 b1 [amd64, arm64, armel, armhf, i386, ppc64, ppc64el, riscv64, s390x, sparc64], 3.4.0-3 [alpha, m68k, sh4, x32], 3.4.0-2 b2 [hppa], 3.4.0-2 b1 [ia64])
- Find RFI in radio astronomical observations
- apbs (3.4.1-6 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.4.1-5.1 b1 [ia64])
- Adaptive Poisson Boltzmann Solver
- apbs-data (3.4.1-6)
- data files for APBS (Adaptive Poisson Boltzmann Solver)
- apbs-doc (3.4.1-6)
- Adaptive Poisson Boltzmann Solver
- apertium-af-nl (0.3.0-3)
- Transitional dummy package for apertium-afr-nld
- apertium-afr-nld (0.3.0-3)
- Apertium translation data for the Afrikaans-Dutch pair
- apertium-all-dev (3.8.1-3)
- Metapackage for all tools required for Apertium development
- apertium-anaphora (1.1.1-1 b2 [arm64], 1.1.1-1 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Anaphora resolution module for Apertium
- apertium-apy (0.11.7-2.2)
- Apertium APY service
- apertium-arg-cat (0.3.0-2)
- Apertium translation data for the Aragonese-Catalan pair
- apertium-bel-rus (0.2.1-2)
- Apertium translation data for the Belarusian-Russian pair
- apertium-br-fr (0.5.1-1)
- Apertium linguistic data to translate between Breton and French
- apertium-ca-it (1.1.0-1)
- Transitional dummy package for apertium-cat-ita
- apertium-cat-ita (1.1.0-1)
- Apertium translation data for the Catalan-Italian pair
- apertium-cat-srd (1.2.0-1)
- Apertium translation data for the Catalan-Sardinian pair
- apertium-dan-nor (1.5.0-2)
- Apertium translation data for the Danish-Norwegian pair
- apertium-dev (3.9.4-1 b2 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.9.4-1 b1 [alpha], 3.9.4-1 [ia64])
- Development tools and library for Apertium
- apertium-en-gl (0.5.4-2)
- Apertium translation data for the English-Galician pair
- apertium-eng-cat (1.0.1-5)
- Apertium translation data for the English-Catalan pair
- apertium-eng-spa (0.8.1-2)
- Apertium translation data for the English-Spanish pair
- apertium-eo-en (1.0.2-1)
- Apertium linguistic data to translate between Esperanto and English
- apertium-eo-fr (0.9.1-1)
- Apertium translation data for the Esperanto-French pair
- apertium-es-ast (1.1.1-2)
- Transitional dummy package for apertium-spa-ast
- apertium-es-it (0.2.1-3)
- Transitional dummy package for apertium-spa-ita
- apertium-eu-en (0.3.3-1)
- Apertium translation data for the Basque-English pair
- apertium-eval-translator (1.2.1-3)
- Evaluate machine translation output against reference
- apertium-fra-cat (1.10.0-1)
- Apertium translation data for the French-Catalan pair
- apertium-fra-frp (1.1.0-1)
- Apertium translation data for the French-Arpitan pair
- apertium-get (1.0.0-3)
- Helper for Apertium and Giellatekno languages and pairs
- apertium-hbs-eng (0.5.1-2)
- Apertium translation data for the Serbo-Croatian - English pair
- apertium-hbs-mkd (0.1.1-1)
- Apertium translation data for the Serbo-Croatian-Macedonian pair
- apertium-hbs-slv (0.5.1-2)
- Apertium translation data for the Serbo-Croatian-Slovenian pair
- apertium-hin (0.1.0~r59158-4)
- Apertium single language data for Hindi
- apertium-id-ms (0.1.2-3)
- Transitional dummy package for apertium-ind-zlm
- apertium-ind-zlm (0.1.2-3)
- Apertium translation data for the Indonesian-Malay pair
- apertium-is-sv (0.1.1-2)
- Transitional dummy package for apertium-isl-swe
- apertium-isl-eng (0.1.2-1)
- Apertium translation data for the Icelandic-English pair
- apertium-isl-swe (0.1.1-2)
- Apertium translation data for the Icelandic-Swedish pair
- apertium-lex-tools (0.4.2-2 b4 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 0.4.2-2 b3 [hppa, m68k, ppc64, sh4, sparc64, x32], 0.4.2-2 b2 [alpha], 0.4.2-2 b1 [ia64])
- Constraint-based lexical selection module
- apertium-lex-tools-dev (0.4.2-2 b4 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 0.4.2-2 b3 [hppa, m68k, ppc64, sh4, sparc64, x32], 0.4.2-2 b2 [alpha], 0.4.2-2 b1 [ia64])
- Development library for Apertium lexical selection module
- apertium-mk-bg (0.2.1-2)
- Transitional dummy package for apertium-mkd-bul
- apertium-mk-en (0.1.3-2)
- Transitional dummy package for apertium-mkd-eng
- apertium-mkd-bul (0.2.1-2)
- Apertium translation data for the Macedonian-Bulgarian pair
- apertium-mkd-eng (0.1.3-2)
- Apertium translation data for the Macedonian-English pair
- apertium-nno-nob (1.5.0-1)
- Apertium translation data for the Norwegian Nynorsk-Norwegian Bokmål pair
- apertium-oci-fra (1.0.0-1)
- Apertium translation data for the Occitan-French pair
- apertium-pol-szl (0.2.1-3)
- Apertium translation data for the Polish-Silesian pair
- apertium-por-cat (0.10.1-2)
- Apertium translation data for the Portuguese-Catalan pair
- apertium-recursive (1.1.2-1 b2 [arm64], 1.1.2-1 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Apertium recursive structural transfer module
- apertium-regtest (0.9.1-3)
- Regression test suite for Apertium languages and pairs
- apertium-rus-ukr (0.2.1-4)
- Apertium translation data for the Russian-Ukrainian pair
- apertium-separable (0.6.1-1 b2 [arm64], 0.6.1-1 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Reordering separable/discontiguous multiwords
- apertium-spa-arg (0.6.0-2)
- Apertium translation data for the Spanish-Aragonese pair
- apertium-spa-ast (1.1.1-2)
- Apertium translation data for the Spanish-Asturian pair
- apertium-spa-ast
- 本虚包由这些包填实： apertium-spa-ast
- apertium-spa-cat (2.2.0-3)
- Apertium translation data for the Spanish-Catalan pair
- apertium-spa-ita (0.2.1-3)
- Apertium translation data for the Spanish-Italian pair
- apertium-srd-ita (1.3.0-1)
- Apertium translation data for the Sardinian-Italian pair
- apertium-swe-dan (0.8.1-3)
- Apertium translation data for the Swedish-Danish pair
- apertium-swe-nor (0.4.0-1)
- Apertium translation data for the Swedish-Norwegian pair
- apertium-urd (0.1.0~r61311-3)
- Apertium single language data for Urdu
- apertium-urd-hin (0.1.0~r64379-4)
- Apertium translation data for the Urdu-Hindi pair
- aragorn (1.2.41-3 b1 [arm64], 1.2.41-3 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- tRNA and tmRNA detection in nucleotide sequences
- arb (6.0.6-8) [non-free]
- phylogenetic sequence analysis suite - main program
- arb-common (6.0.6-8) [non-free]
- phylogenetic sequence analysis suite - common files
- arden (1.0-6)
- specificity control for read alignments using an artificial reference
- ariba (2.14.7 ds-5 [amd64, arm64, mips64el, ppc64el, riscv64], 2.14.7 ds-4 [alpha], 2.14.6 ds-2 b1 [m68k])
- Antibiotic Resistance Identification By Assembly
- art-nextgen-simulation-tools (20160605 dfsg-5 b2 [riscv64], 20160605 dfsg-5 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32], 20160605 dfsg-5 [ia64])
- simulation tools to generate synthetic next-generation sequencing reads
- art-nextgen-simulation-tools-profiles (20160605 dfsg-5)
- profiles for art simulation tools
- artemis (18.2.0 dfsg-4)
- genome browser and annotation tool
- artfastqgenerator (0.0.20150519-5)
- outputs artificial FASTQ files derived from a reference genome
- artfastqgenerator-examples (0.0.20150519-5)
- outputs artificial FASTQ files derived from a reference genome (examples)
- asdftool (4.0.0-1)
- Command line tool to manipulate ASDF scientific data files
- ase (3.23.0-1)
- Atomic Simulation Environment
- assembly-stats (1.0.1 ds-6 b1 [riscv64], 1.0.1 ds-6 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64])
- get assembly statistics from FASTA and FASTQ files
- assemblytics (1.2.1 dfsg-2)
- detect and analyze structural variants from a genome assembly
- astap (2024.05.01-1)
- astrometric (plate) solver, stacking of images, photometry and FITS viewer
- astap-cli (2024.05.01-1)
- astrometric (plate) solver, command line version
- astro-tasks (4.1)
- Debian Astronomy Pure Blend (tasksel tasks)
- astromatic (1.3)
- Astronomical pipeline software collection
- astrometry-data-2mass (1.1) [contrib]
- Astrometry.net 2MASS index files downloader
- astrometry-data-2mass-00 (1.1) [contrib]
- Astrometry.net 2MASS index files downloader (2'-2.8')
- astrometry-data-2mass-01 (1.1) [contrib]
- Astrometry.net 2MASS index files downloader (2.8'-4')
- astrometry-data-2mass-02 (1.1) [contrib]
- Astrometry.net 2MASS index files downloader (4'-5.6')
- astrometry-data-2mass-03 (1.1) [contrib]
- Astrometry.net 2MASS index files downloader (5.6'-8')
- astrometry-data-2mass-04 (1.1) [contrib]
- Astrometry.net 2MASS index files downloader (8'-11')
- astrometry-data-2mass-05 (1.1) [contrib]
- Astrometry.net 2MASS index files downloader (11'-16')
- astrometry-data-2mass-06 (1.1) [contrib]
- Astrometry.net 2MASS index files downloader (16'-22')
- astrometry-data-2mass-07 (1.1) [contrib]
- Astrometry.net 2MASS index files downloader (22'-30')
- astrometry-data-2mass-08-19 (1.1) [contrib]
- Astrometry.net 2MASS index files downloader (30'-2000')
- astrometry-data-tycho2 (2-5)
- Astrometry.net Tycho-2 index files
- astrometry-data-tycho2-07 (2-5 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x], 2-4 [alpha, hppa, m68k, sh4, sparc64, x32])
- Astrometry.net Tycho-2 index files (22'-30')
- astrometry-data-tycho2-07-bigendian (2-5)
- Astrometry.net Tycho-2 big endian index files (22'-30')
- astrometry-data-tycho2-07-littleendian (2-5)
- Astrometry.net Tycho-2 little endian index files (22'-30')
- astrometry-data-tycho2-08 (2-5 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x], 2-4 [alpha, hppa, m68k, sh4, sparc64, x32])
- Astrometry.net Tycho-2 index files (30'-44')
- astrometry-data-tycho2-08-bigendian (2-5)
- Astrometry.net Tycho-2 big endian index files (30'-44')
- astrometry-data-tycho2-08-littleendian (2-5)
- Astrometry.net Tycho-2 little endian index files (30'-44')
- astrometry-data-tycho2-09 (2-5 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x], 2-4 [alpha, hppa, m68k, sh4, sparc64, x32])
- Astrometry.net Tycho-2 index files (44'-60')
- astrometry-data-tycho2-09-bigendian (2-5)
- Astrometry.net Tycho-2 big endian index files (44'-60')
- astrometry-data-tycho2-09-littleendian (2-5)
- Astrometry.net Tycho-2 little endian index files (44'-60')
- astrometry-data-tycho2-10-19 (2-5 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x], 2-4 [alpha, hppa, m68k, sh4, sparc64, x32])
- Astrometry.net Tycho-2 index files (60'-2000')
- astrometry-data-tycho2-10-19-bigendian (2-5)
- Astrometry.net Tycho-2 big endian index files (60'-2000')
- astrometry-data-tycho2-10-19-littleendian (2-5)
- Astrometry.net Tycho-2 little endian index files (60'-2000')
- astrometry.net (0.97 dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.93 dfsg-1.1 b1 [ia64])
- Astrometry plate solver
- astronomical-almanac (5.6-8 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 5.6-7 [alpha, ia64])
- astronomical almanac - calculate planet and star positions
- astropy-utils (7.0.0-1)
- Command line tools from astropy
- atac (0~20150903 r2013-9 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0~20150903 r2013-8 b3 [ia64])
- genome assembly-to-assembly comparison
- ataqv (1.3.1 ds-2 b3 [alpha, arm64, m68k, sh4, x32], 1.3.1 ds-2 b2 [amd64, armel, armhf, i386, ia64, mips64el, ppc64el, riscv64], 1.3.0 ds-1 [hppa])
- ATAC-seq QC and visualization
- atomes (1.1.15-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.1.12 repack-1 [ia64])
- atomic-scale 3D modeling toolbox
- atomes-data (1.1.15-1)
- atomic-scale 3D modeling toolbox (data)
- atropos (1.1.32 dfsg-2 b1 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64el, riscv64, sh4, x32], 1.1.32 dfsg-1 [ia64])
- NGS read trimming tool that is specific, sensitive, and speedy
- augur (24.4.0-1)
- pipeline components for real-time virus analysis
- augustus (3.5.0 dfsg-4 b6 [riscv64], 3.5.0 dfsg-4 b5 [alpha, amd64, arm64, armel, armhf, i386, mips64el, ppc64el, s390x, x32], 3.5.0 dfsg-4 b4 [m68k, sh4], 3.5.0 dfsg-4 [hppa, ppc64, sparc64], 3.4.0 dfsg2-3 [ia64])
- gene prediction in eukaryotic genomes
- augustus-data (3.5.0 dfsg-4)
- data files for AUGUSTUS
- autodock (4.2.6-9 b1 [arm64, riscv64], 4.2.6-9 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- analysis of ligand binding to protein structure
- autodock-getdata (4.2.6-9)
- instructions for getData to collect compounds
- autodock-test (4.2.6-9)
- test files for AutoDock
- autodock-vina (1.2.5-2 b1 [alpha, arm64, x32], 1.2.5-2 [amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64])
- docking of small molecules to proteins
- autogrid (4.2.6-9 b1 [arm64, riscv64], 4.2.6-9 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- pre-calculate binding of ligands to their receptor
- autogrid-test (4.2.6-9)
- test files for AutoGrid
- avce00 (2.0.0-9 b1 [arm64, riscv64], 2.0.0-9 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Conversion of ESRI Arcinfo Vector Coverage in E00 format
- avogadro (1.99.0-1 b2 [arm64], 1.99.0-1 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 1.99.0-1 [m68k, x32])
- Molecular Graphics and Modelling System
- avogadro-utils (1.99.0-5 b4 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.99.0-5 b2 [hppa, sh4], 1.99.0-5 b1 [alpha, ia64, x32], 1.99.0-5 [m68k])
- Molecular Graphics and Modelling System (library)
- axe-demultiplexer (0.3.3 dfsg-4 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.3.3 dfsg-4 [ia64])
- Trie-based DNA sequencing read demultiplexer
- bagel (1.2.2-8 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.2.2-7 [ia64])
- Computational Chemistry Package
- baitfisher (1.2.7 git20211020.de26d5c dfsg-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.2.7 git20211020.de26d5c dfsg-1 [ia64])
- software package for designing hybrid enrichment probes
- bali-phy (3.6.1 dfsg-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.6.1 dfsg-1 [ia64], 3.5.0.1 dfsg-1 [x32])
- Bayesian Inference of Alignment and Phylogeny
- ballview (1.5.0 git20180813.37fc53c-11 b5 [amd64, arm64, i386, mips64el, ppc64el, riscv64, s390x, sparc64], 1.5.0 git20180813.37fc53c-11 b3 [hppa, m68k, ppc64, sh4], 1.5.0 git20180813.37fc53c-11 b2 [alpha, ia64], 1.5.0 git20180813.37fc53c-11 b1 [x32])
- free molecular modeling and molecular graphics tool
- bamclipper (1.0.0-3)
- Remove gene-specific primer sequences from SAM/BAM alignments
- bamkit (0.0.1 git20170413.ccd079d-3)
- tools for common BAM file manipulations
- bamtools (2.5.2 dfsg-6 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.5.2 dfsg-5 [ia64])
- toolkit for manipulating BAM (genome alignment) files
- bandage (0.9.0-2 b3 [riscv64], 0.9.0-2 b2 [arm64], 0.9.0-2 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Bioinformatics Application for Navigating De novo Assembly Graphs Easily
- bandage-examples (0.9.0-2)
- Bioinformatics Application for Navigating De novo Assembly Graphs Easily (data)
- barrnap (0.9 dfsg-4)
- rapid ribosomal RNA prediction
- bart (0.9.00-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.9.00-2 b1 [ia64])
- tools for computational magnetic resonance imaging
- bart
- 本虚包由这些包填实： bart-cuda
- bart-cuda (0.8.00-2 b1) [contrib]
- tools for computational magnetic resonance imaging
- bart-view (0.3.00-1 b2 [arm64], 0.3.00-1 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- viewer for multi-dimensional complex-valued data
- bbmap (39.13 dfsg-1)
- BBTools genomic aligner and other tools for short sequences
- bbmap-jni (39.13 dfsg-1 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 39.06 dfsg-1 [ia64])
- short read aligner and other bioinformatic tools - JNI library
- bcalm (2.2.3-5 b3 [arm64], 2.2.3-5 b2 [amd64, mips64el, ppc64, ppc64el, riscv64, sparc64, x32], 2.2.3-5 b1 [alpha, ia64], 2.2.3-3 [hppa])
- de Bruijn compaction in low memory
- bcbio (1.2.9-2) [contrib]
- toolkit for analysing high-throughput sequencing data
- bcftools (1.20-2 b1 [arm64], 1.20-2 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.20-1 [ia64])
- genomic variant calling and manipulation of VCF/BCF files
- beads (1.1.22-1 b4 [arm64, armel, armhf, riscv64], 1.1.22-1 b3 [amd64, hppa, i386, mips64el, ppc64, ppc64el, s390x, sparc64], 1.1.22-1 b2 [alpha], 1.1.20-3 [m68k], 1.1.20-2 [x32])
- 2-DE electrophoresis gel image spot detection
- beagle (241029-1)
- Genotype calling, genotype phasing and imputation of ungenotyped markers
- beast-mcmc (1.10.4 dfsg-6)
- Bayesian MCMC phylogenetic inference
- beast2-mcmc (2.7.6 dfsg-1)
- Bayesian MCMC phylogenetic inference
- bedops (2.4.41 dfsg-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 2.4.41 dfsg-2 [ia64], 2.4.26 dfsg-1 [sh4])
- high-performance genomic feature operations
- bedtools (2.31.1 dfsg-2 b2 [riscv64], 2.31.1 dfsg-2 b1 [arm64], 2.31.1 dfsg-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, x32], 2.26.0 dfsg-5 [sparc64])
- suite of utilities for comparing genomic features
- bedtools-test (2.31.1 dfsg-2)
- test data for the bedtools package
- belvu (4.44.1 dfsg-7.1 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 4.44.1 dfsg-7.1 b1 [alpha, hppa, m68k, ppc64, sh4, sparc64, x32], 4.44.1 dfsg-7.1 [ia64])
- multiple sequence alignment viewer and phylogenetic tool
- berkeley-express (1.5.3 dfsg-3 b4 [arm64, hppa, x32], 1.5.3 dfsg-3 b3 [alpha, amd64, armel, armhf, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64], 1.5.3 dfsg-3 b2 [riscv64])
- Streaming quantification for high-throughput sequencing
- bio-eagle (2.4.1-3 b3)
- Haplotype phasing within a genotyped cohort or using a phased reference panel
- bio-eagle-examples (2.4.1-3)
- Examples for bio-eagle
- bio-rainbow (2.0.4 dfsg-2 b2 [riscv64], 2.0.4 dfsg-2 b1 [arm64], 2.0.4 dfsg-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- clustering and assembling short reads for bioinformatics
- bio-vcf (0.9.5-3)
- domain specific language (DSL) for processing the VCF format
- bioawk (1.0-5 b1 [arm64], 1.0-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- extension of awk for biological sequence analysis
- biobambam2 (2.0.185 ds-2)
- tools for early stage alignment file processing
- biogenesis (0.8-3.2)
- artificial life program that simulates evolution of organisms
- bioperl (1.7.8-1)
- 用于处理计算分子生物学的 Perl 工具
- bioperl-run (1.7.3-13)
- BioPerl wrappers: scripts
- biosig-tools (2.6.1-1 b1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 2.6.0-1 [alpha, sh4], 2.5.0-1 b2 [hppa], 2.5.0-1 b1 [m68k], 2.4.0-2 [x32])
- format conversion tools for biomedical data formats
- biosquid (1.9g cvs20050121-15.1 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.9g cvs20050121-15.1 [alpha, ia64])
- utilities for biological sequence analysis
- biosyntax (1.0.0b-6)
- Syntax Highlighting for Computational Biology (metapackage)
- biosyntax-common (1.0.0b-6)
- Syntax Highlighting for Computational Biology (common files)
- biosyntax-example (1.0.0b-6)
- Syntax Highlighting for Computational Biology (example)
- biosyntax-gedit (1.0.0b-6)
- Syntax Highlighting for Computational Biology (gedit)
- biosyntax-less (1.0.0b-6)
- Syntax Highlighting for Computational Biology (less)
- biosyntax-vim (1.0.0b-6)
- Syntax Highlighting for Computational Biology (vim)
- bitseq (0.7.5 dfsg-6 b2 [riscv64], 0.7.5 dfsg-6 b1 [arm64], 0.7.5 dfsg-6 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Bayesian Inference of Transcripts from Sequencing Data
- bitwise (0.50-1 b2 [arm64], 0.50-1 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Interactive bitwise operation in ncurses
- bkchem (0.14.0~pre4 git20211228-5)
- 化学结构编辑器
- blasr (5.3.5 dfsg-7 b1 [amd64, arm64, mips64el, ppc64el, riscv64], 5.3.5 dfsg-7 [alpha], 5.3.5 dfsg-6 b4 [ia64], 5.3.3 dfsg-1 b1 [m68k, sh4], 5.3-1 b1 [x32], 0~20150724 git3ca7fe8-1 b2 [hppa, ppc64])
- mapping single-molecule sequencing reads
- blimps-utils (3.9 ds-3) [non-free]
- blocks database improved searcher
- blixem (4.44.1 dfsg-7.1 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 4.44.1 dfsg-7.1 b1 [alpha, hppa, m68k, ppc64, sh4, sparc64, x32], 4.44.1 dfsg-7.1 [ia64])
- interactive browser of sequence alignments
- bluebrain-hpc-coding-conventions (1.0.0 git20221201-2)
- BlueBrain HPC Team C Development Guidelines
- bmt (0.6-1.1)
- software analysis benchmarking toolkit
- bodr (10-3)
- Blue Obelisk Data Repository
- bolt-lmm (2.4.1 dfsg-2)
- Efficient large cohorts genome-wide Bayesian mixed-model association testing
- bolt-lmm-example (2.4.1 dfsg-2)
- Examples for bolt-lmm
- boolector (1.5.118.6b56be4.121013-1.3 b2 [riscv64], 1.5.118.6b56be4.121013-1.3 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- SMT solver for bit-vectors and arrays
- bornagain (22~git20241125114253.51de53a ds3-1 [amd64, armel, armhf, mips64el, sparc64], 22~git20240726093306.cb41cc4 ds3-2 [arm64, i386, ppc64, ppc64el, riscv64, s390x], 1.19.0-4 [hppa], 1.19.0-3 b5 [alpha, m68k])
- Simulate and fit X-ray and neutron GISAS -- binary
- bowtie (1.3.1-3 b1 [arm64], 1.3.1-3 [alpha, amd64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.0.1-2 [x32], 1.0.0-6 [hppa, sh4])
- Ultrafast memory-efficient short read aligner
- bowtie-examples (1.3.1-3)
- Examples for bowtie, the ultrafast memory-efficient short read aligner
- bowtie2 (2.5.4-1 b1 [amd64, arm64, mips64el, ppc64el, riscv64], 2.5.4-1 [alpha], 2.5.1-1 [ia64], 2.4.5-1 [ppc64, sparc64], 2.4.2-2 b1 [m68k, sh4])
- ultrafast memory-efficient short read aligner
- bowtie2-examples (2.5.4-1)
- Examples for bowtie2
- boxshade (3.3.1-14 b2 [riscv64], 3.3.1-14 b1 [arm64], 3.3.1-14 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Pretty-printing of multiple sequence alignments
- bppphyview (0.6.1-5 b1 [arm64], 0.6.1-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Bio Phylogenetic Viewer
- bppsuite (2.4.1-7 b1 [arm64], 2.4.1-7 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Bio program suite
- bppsuite-examples (2.4.1-7)
- Examples for Bio program suite
- brain2mesh-demos (0.7.9-3)
- sample files and demo scripts for Brain2Mesh
- brig (0.95 dfsg-3 b2 [riscv64], 0.95 dfsg-3 [alpha, amd64, arm64, armel, armhf, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- BLAST Ring Image Generator
- btllib-tools (1.4.10 dfsg-1 b2 [riscv64], 1.4.10 dfsg-1 b1 [arm64], 1.4.10 dfsg-1 [amd64, mips64el, ppc64, ppc64el])
- Bioinformatics Technology Lab common code library tools
- busco (5.5.0-3 [amd64, arm64, i386, m68k, sh4], 5.5.0-2 [alpha, ppc64])
- benchmarking sets of universal single-copy orthologs
- bustools (0.43.2 dfsg-1)
- program for manipulating BUS files for single cell RNA-Seq datasets
- bwa (0.7.18-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.7.17-7 b4 [ia64])
- Burrows-Wheeler Aligner
- c-munipack (2.1.37-1 b1 [arm64], 2.1.37-1 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.1.36-2 b1 [ia64])
- reduction of images carried out by CCD camera
- c-munipack-share (2.1.37-1)
- reduction of images carried out by CCD camera (share)
- c2x (2.41.b ds-2)
- converter between DFT electronic structure codes formats
- cafeobj (1.6.0-2)
- new generation algebraic specification and programming language
- cafeobj-mode (1.6.0-2)
- Emacs major mode for editing CafeOBJ source code
- calceph (4.0.3-1)
- Planetary ephemeris data access tools
- calculix-ccx (2.21-1 b1 [arm64], 2.21-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Three-Dimensional Structural Finite Element Program
- calculix-cgx (2.21 dfsg-1 b1)
- Calculix cgx is a 3-dimensional pre- and post-processor for fem
- callisto (1.1.0-3 b1 [arm64], 1.1.0-3 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.1.0-2 b3 [ia64])
- Daemon for e-Callisto hardware
- camitk-actionstatemachine (5.2.0-2 b4 [amd64], 3.4.0-2 b1 [sparc64], 3.4.0-2 [hppa, x32], 3.4.0-1 [alpha], 3.2.2-2 [ppc64])
- pipeline replay application for the CamiTK library
- camitk-config (5.2.0-2 b4)
- Computer Assisted Medical Intervention Tool Kit - config
- camitk-imp (5.2.0-2 b4 [amd64], 3.4.0-2 b1 [sparc64], 3.4.0-2 [hppa, x32], 3.4.0-1 [alpha], 3.2.2-2 [ppc64])
- workbench application for the CamiTK library
- canu (2.2 dfsg-5 b1 [arm64, riscv64], 2.2 dfsg-5 [amd64, ia64, mips64el, ppc64, ppc64el, s390x, sparc64, x32], 2.0 dfsg-2 [alpha, m68k, sh4])
- single molecule sequence assembler for genomes
- casacore-data-igrf (12-1)
- International Geomagnetic Reference Field data for casacore
- casacore-data-jpl-de200 (2007.07.05 ds.1-1)
- Jet Propulsion Laboratory Development Ephemeris DE200 for casacore
- casacore-data-jpl-de405 (2007.07.05 ds.1-1)
- Jet Propulsion Laboratory Development Ephemeris DE405 for casacore
- casacore-data-lines (0 git2016.11.26-2.1)
- Table of spectral line frequencies for casacore
- casacore-data-observatories (0 git2018.12.08-3)
- Table of radio observatory coordinates for casacore
- casacore-data-sources (2-6)
- Table of ICRF reference source coordinates for casacore
- casacore-data-tai-utc (1.3)
- Difference table between TAI and UTC for casacore
- casacore-tools (3.6.1-3 [alpha, amd64, arm64, armel, armhf, i386, m68k, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.5.0-4.1 b1 [ia64], 3.5.0-4.1 [hppa])
- Tools built with CASA
- cassbeam (1.1-4 b2 [arm64, riscv64], 1.1-4 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Cassegrain antenna modelling
- cassiopee (1.0.9-4 b2 [arm64, x32], 1.0.9-4 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64])
- index and search tool in genomic sequences
- cat-bat (5.3-2)
- taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
- catfishq (1.4.0 ds-1)
- concatenates fastq files
- cba (0.3.6-6 b5 [mips64el], 0.3.6-6 b4 [alpha, amd64, arm64, armel, armhf, hppa, i386, ppc64, ppc64el, s390x, sh4, sparc64], 0.3.6-6 b3 [riscv64], 0.3.6-6 b2 [x32], 0.3.6-6 [ia64, m68k])
- Continuous Beam Analysis
- cbflib-bin (0.9.7 dfsg1-4 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 0.9.7 dfsg1-4 b1 [alpha, hppa, m68k, sh4], 0.9.7 dfsg1-3.1 b1 [ia64])
- utilities to manipulate CBF files
- cbmc (6.1.1-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 5.95.1-4 [ia64])
- bounded model checker for C and C programs
- cclib (1.8-1)
- Parsers and algorithms for computational chemistry
- cclib-data (1.6.2-2) [non-free]
- Parsers and algorithms for computational chemistry (data files)
- cct (1:1.0.3-1)
- visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
- cct-examples (1:1.0.3-1)
- example data for testing the package cct
- cd-hit (4.8.1-4 b1 [arm64, riscv64], 4.8.1-4 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- suite of programs designed to quickly group sequences
- cdbfasta (1.00 git20230710.da8f5ba dfsg-1 b1 [arm64, riscv64], 1.00 git20230710.da8f5ba dfsg-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Constant DataBase indexing and retrieval tools for multi-FASTA files
- centrifuge (1.0.4.2-1 [amd64, arm64, mips64el, ppc64el, riscv64], 1.0.3-12 [ia64], 1.0.3-11 [hppa])
- rapid and memory-efficient system for classification of DNA sequences
- cg3 (1.4.6-1 b3 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 1.4.6-1 b2 [hppa, m68k, ppc64, sh4, sparc64, x32], 1.4.6-1 b1 [alpha], 1.4.6-1 [ia64])
- Tools for using the 3rd edition of Constraint Grammar (CG-3)
- cg3-dev (1.4.6-1)
- Metapackage providing both CG-3 CLI dev tools and dev library
- cgns-convert (3.4.0-5 b1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 3.4.0-5 [alpha, hppa, m68k, sh4], 3.4.0-4 [ia64])
- CFD General Notation System - Conversion tools
- cgview (0.0.20100111-7)
- Circular Genome Viewer
- ch5m3d (1.2.5 dfsg-3)
- create and visualize 3-dimensional drawings of simple molecules
- changeo (1.3.0-3)
- Repertoire clonal assignment toolkit (Python 3)
- checkit-tiff (1.4.4-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.4.4-1 [ia64])
- conformance checker for baseline TIFFs
- chemical-structures (2.2.dfsg.0-20)
- web service providing molecular structures in open formats
- chemical-structures-data (2.2.dfsg.0-20)
- set of molecular structures in open formats
- chemonomatopist (0.10.0-1)
- derive IUPAC systematic names for chemical structures
- chemps2 (1.8.12-3.1 b4 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 1.8.12-3.1 b3 [hppa, m68k], 1.8.12-3.1 b2 [alpha, sh4], 1.8.12-3.1 b1 [ia64])
- Executable to call libchemps2-3t64 from the command line
- chemtool (1.6.14-6 b2 [arm64, riscv64], 1.6.14-6 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- chemical structures drawing program
- chimeraslayer (20101212 dfsg1-6)
- detects likely chimeras in PCR amplified DNA
- chip-seq (1.5.5-3 b1 [arm64, riscv64], 1.5.5-3 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- tools performing common ChIP-Seq data analysis tasks
- chip-seq-data (1.5.5-3)
- tools performing common ChIP-Seq data analysis tasks (data)
- chromhmm (1.25 dfsg-1)
- Chromatin state discovery and characterization
- chromimpute (1.0.3 dfsg-5)
- Large-scale systematic epigenome imputation
- cif-linguist (0.4.2-5 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 0.4.2-5 b1 [hppa, m68k, ppc64, sparc64, x32], 0.4.2-5 [alpha, ia64], 0.4.2-2 [sh4])
- transform CIF data among CIF formats and dialects
- cif-tools (1.0.12-4 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 1.0.7-1 b1 [x32], 1.0.7-1 [ia64])
- Suite of tools to manipulate, validate and query mmCIF files
- cif2hkl (1.4.5 ds1-1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 1.4.3 ds1-1 [sh4], 1.4.2 ds1-1 [ia64])
- Convert crystallographic descriptions into HKL F^2 reflection lists
- circlator (1.5.6-12)
- circularize genome assemblies
- circos (0.69.9 dfsg-2)
- plotter for visualizing data
- circos-tools (0.23-1)
- plotter for visualizing data - helper utilities
- ckon (0.7.1-5 b5 [alpha, arm64, x32], 0.7.1-5 b4 [amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, sparc64], 0.7.1-5 b3 [riscv64, s390x, sh4])
- automatic build tool for ROOT data analysis software
- clearcut (1.0.9 git20211013.b799afe-1 b1 [arm64, riscv64], 1.0.9 git20211013.b799afe-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- extremely efficient phylogenetic tree reconstruction
- clonalframe (1.2-11 b3 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, s390x], 1.2-11 b2 [alpha, hppa, m68k, ppc64, riscv64, sh4, sparc64, x32], 1.2-11 b1 [ia64])
- inference of bacterial microevolution using multilocus sequence data
- clonalframeml (1.13-1 b1 [arm64], 1.13-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Efficient Inference of Recombination in Whole Bacterial Genomes
- clonalorigin (1.0-8 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.0-8 [ia64])
- inference of homologous recombination in bacteria using whole genome sequences
- clustalo (1.2.4-8 b1 [arm64], 1.2.4-8 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- General-purpose multiple sequence alignment program for proteins
- clustalw (2.1 lgpl-7 b1 [arm64, riscv64], 2.1 lgpl-7 [alpha, amd64, hppa, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- global multiple nucleotide or peptide sequence alignment
- clustalx (2.1 lgpl-9 b2 [arm64, riscv64], 2.1 lgpl-9 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- 核酸序列或蛋白质序列的多序列比对程序(图形界面)
- cluster3 (1.59 ds-6) [non-free]
- Reimplementation of the Eisen-clustering software
- cmor-tables (3.3-1.1)
- MIP tables for the Climate Model Output Rewriter library
- cmtk (3.3.1p2 dfsg-2 b3 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.3.1p2 dfsg-2 b2 [alpha, ia64])
- Computational Morphometry Toolkit
- cnvkit (0.9.10-2)
- Copy number variant detection from targeted DNA sequencing
- cod-tools (3.10.0 dfsg-2 b2 [amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4], 3.10.0 dfsg-2 b1 [x32], 3.10.0 dfsg-2 [alpha, sparc64], 3.8.1 dfsg-1 b1 [hppa], 3.4.0 dfsg-1 [ia64])
- tools for manipulating CIF format files
- code-saturne (6.0.2-2 b1 [m68k, riscv64, sh4], 6.0.2-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, s390x, sparc64, x32], 5.2.1 repack-1 [ia64])
- General purpose Computational Fluid Dynamics (CFD) software
- code-saturne-bin (6.0.2-2 b1 [m68k, riscv64, sh4], 6.0.2-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, s390x, sparc64, x32], 5.2.1 repack-1 [ia64])
- General purpose Computational Fluid Dynamics (CFD) software - binaries
- code-saturne-data (6.0.2-2)
- General purpose Computational Fluid Dynamics (CFD) software - data
- code-saturne-doc (6.0.2-2)
- General purpose Computational Fluid Dynamics (CFD) software - Documentation
- code-saturne-include (6.0.2-2 b1 [m68k, riscv64, sh4], 6.0.2-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, s390x, sparc64, x32], 5.2.1 repack-1 [ia64])
- General purpose Computational Fluid Dynamics (CFD) software - includes
- codonw (1.4.4-8 b1 [arm64], 1.4.4-8 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Correspondence Analysis of Codon Usage
- coinor-cbc (2.10.12 ds-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.10.11 ds1-2 [ia64])
- Coin-or branch-and-cut mixed integer programming solver
- coinor-clp (1.17.10 ds-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.17.9 ds-1 [ia64])
- Coin-or linear programming solver
- coinor-csdp (6.2.0-5 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 6.2.0-5 b1 [hppa, m68k, ppc64, sh4, sparc64, x32], 6.2.0-5 [alpha, ia64])
- Software package for semidefinite programming (binaries)
- coinor-libbonmin4 (1.8.9-1 b1 [hppa, ia64], 1.8.9-1 [riscv64]) [debports]
- COIN-OR mixed integer programming
- coinor-libbonmin4t64 (1.8.9-1.1 b2 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 1.8.9-1.1 [sh4])
- COIN-OR mixed integer programming
- coinor-libcbc3.1 (2.10.12 ds-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.10.11 ds1-2 [ia64])
- Coin-or branch-and-cut mixed integer programming solver (shared libraries)
- coinor-libcgl1 (0.60.9 ds-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.60.8 ds-1 [ia64])
- COIN-OR Cut Generation Library
- coinor-libclp1 (1.17.10 ds-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.17.9 ds-1 [ia64])
- Coin-or linear programming solver (shared libraries)
- coinor-libcoinutils3v5 (2.11.11 ds-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.11.4 repack1-4 [ia64])
- COIN-OR collection of utility classes (shared libraries)
- coinor-libosi1v5 (0.108.10 ds-1 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.108.10 ds-1 [alpha, ia64])
- COIN-OR Open Solver Interface
- coinor-libsymphony3 (5.6.17 dfsg-1 b2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 5.6.17 dfsg-1 b1 [ia64], 5.6.17 dfsg-1 [sh4])
- COIN-OR solver for mixed-integer linear programs (shared libraries)
- coinor-libvol1 (1.5.4-4 b1 [arm64, riscv64], 1.5.4-4 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Coin-or linear programming solver (libraries)
- coinor-symphony (5.6.17 dfsg-1 b2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 5.6.17 dfsg-1 b1 [ia64], 5.6.17 dfsg-1 [sh4])
- COIN-OR solver for mixed-integer linear programs
- colmap (3.10-1 b1 [arm64], 3.10-1 [alpha, amd64, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32])
- Structure-from-Motion and Multi-View Stereo
- comet-ms (2019015 cleaned1-4.1 b1 [arm64], 2019015 cleaned1-4.1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Tandem mass spectrometry (MS/MS) search engine
- concavity (0.1 dfsg.1-6 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.1 dfsg.1-5 [ia64])
- predictor of protein ligand binding sites from structure and conservation
- conda-package-handling (2.3.0-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.2.0-2 [ia64])
- create and extract conda packages of various formats
- condor (23.6.2 dfsg-2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 23.4.0 dfsg-1 [alpha, m68k, sh4, x32])
- distributed workload management system
- condor-annex-ec2 (23.6.2 dfsg-2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 23.4.0 dfsg-1 [alpha, m68k, sh4, x32])
- distributed workload management system - single node configuration
- condor-kbdd (23.6.2 dfsg-2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 23.4.0 dfsg-1 [alpha, m68k, sh4, x32])
- distributed workload management system - single node configuration
- condor-test (23.6.2 dfsg-2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 23.4.0 dfsg-1 [alpha, m68k, sh4, x32])
- distributed workload management system - single node configuration
- condor-upgrade-checks (23.6.2 dfsg-2)
- distributed workload management system - single node configuration
- condor-vm-gahp (23.6.2 dfsg-2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 23.4.0 dfsg-1 [alpha, m68k, sh4, x32])
- distributed workload management system - single node configuration
- connectome-workbench (2.0.1-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.5.0-2 b1 [ia64])
- brain visualization, analysis and discovery tool
- conservation-code (20110309.0-8)
- protein sequence conservation scoring tool
- coot (1.1.09 dfsg-2 b1)
- model building program for macromolecular crystallography
- coot-data (1.1.09 dfsg-2)
- various data files needed by Coot
- coot-doc (1.1.09 dfsg-2)
- documentation for Coot
- covtobed (1.3.5 dfsg-2 b1 [arm64, riscv64], 1.3.5 dfsg-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- convert the coverage track from a BAM file into a BED file
- covtobed-examples (1.3.5 dfsg-2)
- example data and scripts for mindthegap
- cp2k (2023.2-2 b1 [amd64, arm64, mips64el, ppc64, ppc64el, s390x], 2023.2-2 [alpha, armel, armhf, i386, riscv64, sh4, x32], 2023.1-2 [ia64, sparc64], 5.1-3 [hppa])
- Ab Initio Molecular Dynamics
- cp2k-data (2023.2-2)
- Ab Initio Molecular Dynamics (data files)
- cpl-plugin-amber (4.4.3 dfsg-1 b1) [debports]
- ESO data reduction pipeline for the AMBER instrument
- cpl-plugin-fors (5.5.7 dfsg-2 b2) [debports]
- ESO data reduction pipeline for the FORS1/2 instruments
- cpl-plugin-giraf (2.16.10 dfsg-1 b1) [debports]
- ESO data reduction pipeline for the GIRAFFE instrument
- cpl-plugin-hawki (2.4.11 dfsg-1) [debports]
- ESO data reduction pipeline for the HAWK-I instrument
- cpl-plugin-muse (2.8.7 dfsg-3) [debports]
- ESO data reduction pipeline for the MUSE instrument
- cpl-plugin-naco (4.4.11 dfsg-1) [debports]
- ESO data reduction pipeline for the NaCo instrument
- cpl-plugin-uves (6.1.8 dfsg-2 b1) [debports]
- ESO data reduction pipeline for the UVES instrument
- cpl-plugin-vimos (4.1.7 dfsg-2 b1) [debports]
- ESO data reduction pipeline for the VIMOS instrument
- cpl-plugin-visir (4.4.2 dfsg-1) [debports]
- ESO data reduction pipeline for the VISIR instrument
- cpl-plugin-xshoo (3.5.3 dfsg-1 b3) [debports]
- ESO data reduction pipeline for the XSHOOTER instrument
- cpptraj (5.1.0 dfsg-4 [alpha, amd64, m68k, sh4, x32], 5.1.0 dfsg-3 b4 [hppa, ppc64, sparc64], 5.1.0 dfsg-3 b3 [ia64], 5.1.0 dfsg-3 b1 [riscv64])
- fast, parallelized molecular dynamics trajectory data analysis
- cpuinfo (0.0~git20240830.fa1c679-5)
- CPU INFOrmation library (binary utilities)
- crac (2.5.2 dfsg-6 b1 [arm64, mips64el, ppc64el, riscv64], 2.5.2 dfsg-6 [amd64, ia64])
- integrated RNA-Seq read analysis
- critterding (1.0-beta12.1 dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.0-beta12.1-1.3 b1 [ia64])
- 人工生命进化演示
- ctdconverter (2.1-8)
- Convert CTD files into Galaxy tool and CWL CommandLineTool files
- ctffind (4.1.14-3 b1 [arm64], 4.1.14-3 [alpha, amd64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 4.1.14-2 [m68k])
- fast and accurate defocus estimation from electron micrographs
- ctsim (6.0.2-6 b6 [mips64el], 6.0.2-6 b5 [amd64, arm64, armel, armhf, hppa, i386, ppc64, ppc64el, s390x, sh4, sparc64], 6.0.2-6 b4 [riscv64], 6.0.2-6 b3 [alpha], 6.0.2-6 [ia64, m68k], 5.2.0-4 [x32])
- 计算机断层摄影模拟器
- ctsim-help (6.0.2-6)
- Online help file for CTSim
- cufflinks (2.2.1 dfsg.1-10) [non-free]
- Transcript assembly, differential expression and regulation for RNA-Seq
- cutadapt (4.7-2)
- Clean biological sequences from high-throughput sequencing reads
- cutesv (2.1.1-1)
- comprehensive discovery of structural variations of genomic sequences
- cwl-upgrader (1.2.11-1)
- Common Workflow Language standalone document upgrader
- cwlformat (2022.02.18-3)
- code formatter for Common Workflow Language
- cwltest (2.5.20241122133319-1)
- Common Workflow Language testing framework
- cwltool (3.1.20241112140730-1)
- Common Workflow Language reference implementation
- cwltool-doc (3.1.20241112140730-1)
- Common Workflow Language reference implementation -- docs
- daligner (1.0 git20240119.335105d-3 b1 [arm64], 1.0 git20240119.335105d-3 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.0 git20240119.335105d-2 [ia64])
- local alignment discovery between long nucleotide sequencing reads
- damapper (0.0 git20240314.b025cf9-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.0 git20210330.ab45103-2 [ia64])
- long read to reference genome mapping tool
- darknet (0.0.0 git20180914.61c9d02e-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 0.0.0 git20180914.61c9d02e-2 [x32])
- Open Source Neural Networks in C
- dascrubber (1.1-4 b1 [arm64, riscv64], 1.1-4 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- alignment-based scrubbing pipeline for DNA sequencing reads
- datalad (1.1.4-1)
- data files management and distribution platform
- datalad-container (1.2.5-1)
- DataLad extension for working with containerized environments
- dawg (1.2-4 b2 [arm64], 1.2-4 b1 [amd64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 1.2-4 [alpha, hppa, ia64, m68k, ppc64, sh4, sparc64, x32])
- simulate the evolution of recombinant DNA sequences
- dazzdb (1.0 git20240115.be65e59-1 b1 [arm64], 1.0 git20240115.be65e59-1 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.0 git20230919.414ad05-2 [ia64])
- manage nucleotide sequencing read data
- dcl-f77 (7.5.1-2)
- GFD-DENNOU Club Library (DCL) - FORTRAN77 version
- dcm2niix (1.0.20240202-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, sh4, sparc64, x32], 1.0.20220720-1 b1 [ia64])
- next generation DICOM to NIfTI converter
- dcmtk (3.6.8-6 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 3.6.8-6 [alpha], 3.6.8-5 [sh4], 3.6.7-9.1 [ia64])
- OFFIS DICOM toolkit command line utilities
- dcmtk-data (3.6.8-6)
- OFFIS DICOM toolkit data files
- debian-astro-logo (4.1)
- Debian Astronomy Pure Blends Logo
- deblur (1.1.1-3)
- deconvolution for Illumina amplicon sequencing
- delly (1.1.8-1 b3 [alpha, arm64, x32], 1.1.8-1 b2 [amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64])
- Structural variant discovery by read analysis
- density-fitness (1.0.12-2 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 1.0.8-4 b1 [x32], 1.0.8-4 [ia64], 1.0.0-4 [hppa])
- Calculates per-residue electron density scores
- (1.0-6 b3 [riscv64], 1.0-6 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, s390x, sparc64, x32], 1.0-6 b1 [alpha, hppa, ia64, m68k, sh4])
- (d)extractor and compression command library
- dh-r (20241218)
- Debian helper tools for packaging R libraries
- dialign (2.2.1-13 b1 [arm64], 2.2.1-13 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.2.1-12 [ia64])
- 分段多重序列比对
- dialign-tx (1.0.2-15 b1 [arm64], 1.0.2-15 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Segment-based multiple sequence alignment
- dialign-tx-data (1.0.2-15)
- Segment-based multiple sequence alignment (data files)
- dials (3.22.1 dfsg3-1)
- Diffraction Integration for Advanced Light Sources
- diamond-aligner (2.1.9-1 [amd64, arm64, ia64, ppc64, ppc64el, riscv64, s390x, x32], 0.9.32-2 [sh4], 0.9.31-2 [alpha, m68k], 0.9.31-1 [hppa, sparc64])
- accelerated BLAST compatible local sequence aligner
- dicomnifti (2.33.1-5 b1) [debports]
- converts DICOM files into the NIfTI format
- dimbl (0.17-2 b1 [arm64], 0.17-2 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.15-2.1 b2 [ia64])
- Distributed Memory Based Learner
- discosnp (1:2.6.2-4 b1 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, sparc64, x32], 1:2.6.2-4 [alpha], 1:2.6.2-3 b1 [ia64], 1:2.6.2-1 [hppa], 1.2.6-2 [m68k, sh4])
- discovering Single Nucleotide Polymorphism from raw set(s) of reads
- disulfinder (1.2.11-12 b1 [arm64, riscv64], 1.2.11-12 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- cysteines disulfide bonding state and connectivity predictor
- disulfinder-data (1.2.11-12)
- data files for predictor of disulfide bonds in proteins
- dlmodelbox (1.1.1-1)
- Swiss Army Knife of Deep Learning Models
- dmrgpp (6.06-2 b1)
- Density matrix renormalization group algorithm
- dnaclust (3-7 b4 [alpha, arm64, x32], 3-7 b3 [amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64])
- tool for clustering millions of short DNA sequences
- dnapi (1.1-3)
- adapter prediction for small RNA sequencing - utils
- dnarrange (1.5.3-1)
- Method to find rearrangements in long DNA reads relative to a genome seq
- doris (5.0.3~beta dfsg-17) [contrib]
- Delft object-oriented radar interferometric software
- dotter (4.44.1 dfsg-7.1 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 4.44.1 dfsg-7.1 b1 [alpha, hppa, m68k, ppc64, sh4, sparc64, x32], 4.44.1 dfsg-7.1 [ia64])
- detailed comparison of two genomic sequences
- dozzaqueux (3.51-4)
- simulator for chemical mixtures
- dozzaqueux-data (3.51-4)
- databases for chemical mixtures
- dpuser (4.2 dfsg-1)
- Interactive language for handling numbers, strings, and matrices
- drat-trim (0.0~git20240428.effa1dc-2)
- DART-trim satisfiability proof checker (binary utils)
- drat-trim-examples (0.0~git20240428.effa1dc-2)
- DART-trim satisfiability proof checker (example files)
- drawxtl (5.5-6.1 b2 [arm64, riscv64], 5.5-6.1 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- crystal structure viewer
- drop-seq-testdata (3.0.2 dfsg-1)
- analyzing Drop-seq data (testdata)
- drop-seq-tools (3.0.2 dfsg-1)
- analyzing Drop-seq data
- drs4eb (5.0.6 git20211217 ds-4 b1 [arm64], 5.0.6 git20211217 ds-4 [alpha, amd64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 5.0.6 git20211217 ds-3 [m68k], 5.0.6 git20211217 ds-2 [ia64])
- DRS4 Evaluation Board software
- drslib (0.3.2-1)
- Command-line tools for the Data Reference Syntax library
- dsdp (5.8-10.1)
- Software for Semidefinite Programming
- dssp (4.4.10-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 4.2.2-2 b1 [x32], 4.2.2-2 [ia64])
- protein secondary structure assignment based on 3D structure
- dwgsim (0.1.14-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.1.14-2 [ia64])
- short sequencing read simulator
- dx (1:4.4.4-18 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1:4.4.4-15.1 [ia64])
- OpenDX (IBM Visualization Data Explorer) - main package
- dxf2gcode (20240509-2)
- prepares drawings of parts for automatic machine tools
- dxsamples (4.4.0-5)
- Sample programs for the OpenDX Data Explorer
- dyssol (1.1.1 ds1-2.1 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 1.1.1 ds1-2.1 b1 [alpha, ppc64, sparc64], 1.1.1 ds1-2.1 [m68k, sh4], 1.1.1 ds1-1 [hppa, ia64, x32])
- Tool for dynamic flowsheet simulation. Command line tool
- dyssol-data (1.1.1 ds1-2.1)
- Tool for dynamic flowsheet simulation. Data files
- dyssol-gui (1.1.1 ds1-2.1 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 1.1.1 ds1-2.1 b1 [alpha, ppc64, sparc64], 1.1.1 ds1-2.1 [m68k, sh4], 1.1.1 ds1-1 [hppa, ia64, x32])
- Tool for dynamic flowsheet simulation. GUI
- e-mem (1.0.1-5 b1 [arm64, riscv64], 1.0.1-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Efficient computation of Maximal Exact Matches for very large genomes
- e00compr (1.0.1-7 b1 [arm64, riscv64], 1.0.1-7 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Program to read/write Arcinfo compressed E00 files
- ea-utils (1.1.2 dfsg-9 b3 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, s390x], 1.1.2 dfsg-9 b2 [alpha, hppa, m68k, ppc64, riscv64, sh4, sparc64, x32], 1.1.2 dfsg-9 b1 [ia64])
- command-line tools for processing biological sequencing data
- easychem (0.6-9 b2 [arm64, riscv64], 0.6-9 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- 绘制高质量分子与二维化学式
- ecaccess (4.0.1-1.1)
- clients to access ECMWF facilities
- ecflow-client (5.13.6-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 5.12.4-1 [ia64], 5.11.4-1 b1 [sh4], 5.8.4-2 b1 [x32], 5.8.4-2 [m68k])
- Client tools for Meteorological workflow
- ecflow-server (5.13.6-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 5.12.4-1 [ia64], 5.11.4-1 b1 [sh4], 5.8.4-2 b1 [x32], 5.8.4-2 [m68k])
- Meteorological workflow controller - server
- ecopcr (1.0.1 dfsg-5 b1 [arm64], 1.0.1 dfsg-5 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.0.1 dfsg-4 [ia64])
- estimate PCR barcode primers quality
- ectrans-utils (1.5.1-1 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.3.2-1 [ia64])
- Spherical Harmonics Transforms library - utilities
- edfbrowser (2.12 dfsg-1 [alpha, amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, sh4, x32], 2.07 dfsg-1 [ia64], 1.95 dfsg-1 [hppa, m68k, ppc64, sparc64])
- viewer for biosignal storage files such as bdf and edf
- edlib-aligner (1.2.7-6 b2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 1.2.7-5 b1 [x32], 1.2.7-5 [ia64])
- edlib sequence alignment tool using edit distance
- edtsurf (0.2009-10 b1 [arm64, riscv64], 0.2009-10 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- triangulated mesh surfaces for protein structures
- eigensoft (8.0.0 dfsg-2 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 8.0.0 dfsg-2 [ia64])
- reduction of population bias for genetic analyses
- elastix (5.1.0-1 [amd64], 4.5-4 [alpha, ppc64, x32], 4.4-2 [hppa])
- toolbox for rigid and nonrigid registration of images
- elk-lapw (9.6.8-1 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 9.2.12-1 b1 [ia64])
- All-Electron Density-Functional Electronic Structure Code
- elki (0.7.1-10.1)
- Data mining algorithm development framework
- elki-dev (0.7.1-10.1)
- Data mining algorithm development framework - development files
- elph (1.0.1-5 b1 [arm64, riscv64], 1.0.1-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- DNA/protein sequence motif finder
- embassy-domainatrix (0.1.660-5 b1 [arm64], 0.1.660-5 [alpha, amd64, ia64, mips64el, ppc64, ppc64el, riscv64, sparc64], 0.1.660-4 [hppa, m68k, sh4, x32])
- Extra EMBOSS commands to handle domain classification file
- embassy-domalign (0.1.660-5 b1 [arm64], 0.1.660-5 [alpha, amd64, ia64, mips64el, ppc64, ppc64el, riscv64, sparc64], 0.1.660-4 [hppa, m68k, sh4, x32])
- Extra EMBOSS commands for protein domain alignment
- embassy-domsearch (1:0.1.660-4 b1 [arm64], 1:0.1.660-4 [alpha, amd64, ia64, mips64el, ppc64, ppc64el, riscv64, sparc64], 1:0.1.660-3 [hppa, m68k, sh4, x32])
- Extra EMBOSS commands to search for protein domains
- emboss (6.6.0 dfsg-15 b1 [arm64], 6.6.0 dfsg-15 [alpha, amd64, ia64, mips64el, ppc64, ppc64el, riscv64, sparc64], 6.6.0 dfsg-13 [x32], 6.6.0 dfsg-12 [hppa, m68k, sh4])
- European molecular biology open software suite
- emboss-data (6.6.0 dfsg-15)
- data files for the EMBOSS package
- emboss-explorer (2.2.0-12)
- 一个基于 web 的图形界面程序，用于访问 EMBOSS
- emboss-lib (6.6.0 dfsg-15 b1 [arm64], 6.6.0 dfsg-15 [alpha, amd64, ia64, mips64el, ppc64, ppc64el, riscv64, sparc64], 6.6.0 dfsg-13 [x32], 6.6.0 dfsg-12 [hppa, m68k, sh4])
- EMBOSS Libraries
- emmax (0~beta.20100307-5 b1 [arm64, riscv64], 0~beta.20100307-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- genetic mapping considering population structure
- engauge-digitizer (12.1 ds.1-1 b2 [arm64, riscv64], 12.1 ds.1-1 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- interactively extracts numbers from bitmap graphs or maps
- ent (1.2debian-3 b1 [arm64, riscv64], 1.2debian-3 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- pseudorandom number sequence test program
- epics-base (7.0.8.1 dfsg1-6)
- EPICS tools
- epigrass (3.0.3 dfsg-2 b1 [riscv64], 2.4.7-2 [ia64]) [debports]
- scientific tool for simulations and scenario analysis in network epidemiology
- ergo (3.8.2-1.1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.8-1 [ia64])
- Quantum chemistry program for large-scale calculations
- ergo-data (3.8.2-1.1)
- Quantum chemistry program for large-scale calculations - data package
- eso-midas (23.02pl1.0-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, x32], 23.02pl1.0-2 [ia64], 13.09pl1.4-1 [sparc64])
- European Southern Observatory Munich Image Data Analysis System
- eso-midas-testdata (23.02pl1.0-3)
- Test data files for ESO-MIDAS
- esorex (3.13.7 ds-1 b1 [arm64, riscv64], 3.13.7 ds-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, x32], 3.12.3-1 [sparc64])
- Execution Tool for European Southern Observatory pipelines
- estscan (3.0.3-6 b1 [arm64, riscv64], 3.0.3-6 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- ORF-independent detector of coding DNA sequences
- esys-particle (2.3.5 dfsg2-8 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 2.3.5 dfsg2-1 b2 [x32])
- Software for particle-based numerical modelling (MPI version)
- etsf-io (1.0.4-5 b2 [arm64, riscv64], 1.0.4-5 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Binary tools to check, merge and read ETSF files
- examl (3.0.22-6 b2 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.0.22-6 b1 [alpha, armel, armhf, hppa, i386, m68k, sh4, x32], 3.0.22-5 [ia64])
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
- exonerate (2.4.0-5 b2 [arm64, riscv64], 2.4.0-5 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- generic tool for pairwise sequence comparison
- expeyes (5.3.3 repack-1)
- hardware & software framework for developing science experiments
- expeyes-clib (5.3.3 repack-1 [amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sh4], 5.3.1 repack-6 [sparc64], 5.3.1 repack-5 [alpha], 5.3.0 repack-3 [m68k], 4.9.2 repack-2 [x32], 4.4.3 dfsg-1 [ia64])
- hardware & software framework for developing science experiments
- eye (1:10.30.11~ds-1)
- semantic web reasoning engine
- eyes17 (5.3.3 repack-1)
- hardware & software framework for developing science experiments
- eyes17-manuals-en (5.3.1 repack-1)
- Eyes17 User Manuals (English version)
- eyes17-manuals-es (5.3.1 repack-1)
- Eyes17 User Manuals (Spanish version)
- eyes17-manuals-fr (5.3.1 repack-1)
- Eyes17 User Manuals (French version)
- eyes17-manuals-ml (5.3.1 repack-1)
- Eyes17 User Manuals (Malayalam version)
- facet-analyser (0.0~git20221121142040.6be10b8 ds1-3 b1)
- ParaView plugin for facet detection and angles measurement
- fast5 (0.6.5-8)
- utilities for manipulating Oxford Nanopore Fast5 files
- fasta3 (36.3.8i.14-Nov-2020-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 36.3.8i.14-Nov-2020-1 [ia64])
- tools for searching collections of biological sequences
- fastahack (1.0.0 dfsg-11 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 1.0.0 dfsg-11 b1 [hppa, m68k, ppc64, sh4, sparc64, x32], 1.0.0 dfsg-11 [alpha, ia64])
- utility for indexing and sequence extraction from FASTA files
- fastani (1.33-3 b2 [riscv64], 1.33-3 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32], 1.33-3 [ia64])
- Fast alignment-free computation of whole-genome Average Nucleotide Identity
- fastaq (3.17.0-9)
- FASTA and FASTQ file manipulation tools
- fastdnaml (1.2.2-17 b1 [arm64], 1.2.2-17 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.2.2-16 [ia64])
- 构建 DNA 序列系统发育树的工具
- fastlink (4.1P-fix100 dfsg-5 b1 [arm64], 4.1P-fix100 dfsg-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- faster version of pedigree programs of Linkage
- fastml (3.11-4 b1 [arm64], 3.11-4 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- maximum likelihood ancestral amino-acid sequence reconstruction
- fastp (0.23.4 dfsg-1 b1 [arm64, riscv64], 0.23.4 dfsg-1 [alpha, amd64, armel, armhf, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64], 0.22.0 dfsg-2 [hppa, x32])
- Ultra-fast all-in-one FASTQ preprocessor
- fastq-pair (1.0-3 b1 [arm64, riscv64], 1.0-3 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Rewrites paired end fastq so all reads have a mate to separate out singletons
- fastqc (0.12.1 dfsg-4)
- quality control for high throughput sequence data
- fastqtl (2.184 v7 dfsg-4 b4 [alpha, x32], 2.184 v7 dfsg-4 b3 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 2.184 v7 dfsg-4 b2 [ia64])
- Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes
- fasttext (0.9.2 ds-7 b3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.9.2 ds-7 [ia64])
- Efficient learning of word representations and sentence classification library
- fasttree (2.1.11-2 b1 [arm64, riscv64], 2.1.11-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- phylogenetic trees from alignments of nucleotide or protein sequences
- fcc (2.16-1 b1 [riscv64], 2.16-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Script to compile C/C programs and link to Fortran libraries
- feedgnuplot (1.62-1)
- Pipe-oriented frontend to Gnuplot
- feff85exafs (0.2 dfsg-2 b1 [riscv64], 0.2 dfsg-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Open Source theoretical EXAFS calculations
- ffindex (0.9.9.9-7 b1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 0.9.9.9-7 [armel, armhf, hppa, i386, m68k, sh4, x32], 0.9.9.9-6.1 b1 [ia64])
- simple index/database for huge amounts of small files
- fiat-utils (1.4.1-1 b1 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.4.0-1 [ia64])
- Fortran IFS and Arpege Toolkit - utilities
- figtree (1.4.4-6)
- graphical phylogenetic tree viewer
- filtlong (0.2.1-4 b1 [arm64, riscv64], 0.2.1-4 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- quality filtering tool for long reads of genome sequences
- filtlong-data (0.2.1-4)
- quality filtering tool for long reads of genome sequences (testdata)
- finalcif (137 dfsg-2)
- editor for Crystallographic Information Format
- firm-phoenix-ware (4.7.5 repack-2)
- firmware necessary for boxes issued by project PHOENIX
- fitgcp (0.0.20150429-5)
- fitting genome coverage distributions with mixture models
- fitscut (1.4.4-6 b1 [arm64], 1.4.4-6 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Extract cutouts from FITS image format files
- fitsh (0.9.4-1 b1 [arm64, riscv64], 0.9.4-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Software package for astronomical image processing
- fitspng (2.0-2 b2 [arm64], 2.0-2 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- FITS to PNG converter
- fitsverify (4.22 cfitsio4.5.0-5 [all], 4.22-1 b1 [ia64], 4.21-1 [riscv64])
- 过渡哑包
- fitsverify
- 本虚包由这些包填实： libcfitsio-bin
- fityk (1.3.2-3 b5 [arm64, armhf, mips64el, riscv64], 1.3.2-3 b4 [alpha, amd64, armel, hppa, i386, ppc64, ppc64el, s390x, sh4, sparc64, x32], 1.3.2-3 [m68k], 1.3.2-2 [ia64])
- general-purpose nonlinear curve fitting and data analysis
- flash (1.2.11-2 b1 [arm64, riscv64], 1.2.11-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Fast Length Adjustment of SHort reads
- flexbar (1:3.5.0-5 b1 [arm64, riscv64], 1:3.5.0-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- flexible barcode and adapter removal for sequencing platforms
- (5.0-17 b1 [riscv64], 5.0-17 [alpha, amd64, arm64, ia64, mips64el, ppc64el], 5.0-16 [hppa, m68k, ppc64, sh4, sparc64, x32])
- Trajectory model for tracing air transport phenomena
- flye (2.9.5 dfsg-1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x], 2.9.3 dfsg2-1 [ia64])
- de novo assembler for single molecule sequencing reads using repeat graphs
- fml-asm (0.1 git20221215.85f159e-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.1 git20190320.b499514-1 b1 [ia64])
- tool for assembling Illumina short reads in small regions
- foma (1:0.10.0 s311.20240712-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1:0.10.0 s311-1.2 b1 [ia64])
- Tools for constructing various finite-state automata
- form (4.3.1 git20240409 ds-2 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 4.3.1 git20240409 ds-2 [ia64])
- Symbolic manipulation system
- fractalnow (0.8.2-5 b2 [arm64, riscv64], 0.8.2-5 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Fast, advanced fractal generator
- free42-nologo (3.1.10 ds-1 [amd64, arm64, armel, armhf, i386, m68k, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.1.7 ds-1 [ia64], 1.4.77-1.2 [alpha, hppa])
- Free42 is a re-implementation of the HP-42S calculator
- freebayes (1.3.7-1 b1 [riscv64], 1.3.7-1 [alpha, amd64, arm64, mips64el, ppc64el], 1.3.6-2 b1 [ia64, m68k, ppc64, sh4, sparc64])
- Bayesian haplotype-based polymorphism discovery and genotyping
- freecad (1.0.0 dfsg-2 [all], 0.16.6712 dfsg1-3 [alpha, m68k, x32], 0.16.6712 dfsg1-1 b1 [sh4, sparc64], 0.16 dfsg2-3 [hppa])
- Extensible Open Source CAx program
- freecad-common (1.0.0 dfsg-2)
- Extensible Open Source CAx program - common files
- freecad-python3 (1.0.0 dfsg-2)
- Extensible Open Source CAx program - Python 3 binaries
- freecontact (1.0.21-14 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.0.21-13.1 b1 [ia64])
- fast protein contact predictor
- freesasa (2.1.2-4 b1 [arm64, riscv64], 2.1.2-4 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Solvent Accessible Surface Area of biomolecules
- frog (0.32-2 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.32-2 [alpha], 0.20-2.1 [ia64])
- tagger and parser for natural languages (runtime)
- frogdata (0.22-1)
- Data files for Frog
- fsa (1.15.9 dfsg-6 b1 [arm64, riscv64], 1.15.9 dfsg-6 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64])
- Fast Statistical Alignment of protein, RNA or DNA sequences
- fsm-lite (1.0-8 b1 [arm64, riscv64], 1.0-8 [alpha, amd64, mips64el, ppc64, ppc64el, s390x, sparc64, x32])
- frequency-based string mining (lite)
- ftools-fv (5.5.3 dfsg-1)
- Tool for viewing and editing FITS format files
- ftools-pow (5.5.3 dfsg-1 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 5.5.3 dfsg-1 [alpha], 5.5.2 dfsg-3 [ia64])
- Curve plotting and image display interface tool
- funtools (1.4.8-1.1 b2 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64el, riscv64, s390x, sh4], 1.4.8-1.1 b1 [ppc64, sparc64, x32], 1.4.8-1.1 [alpha, ia64])
- Minimal buy-in FITS utility package
- fxt-tools (0.3.13-4.1 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.3.13-4.1 [alpha, ia64])
- Multithreaded tracing library
- gabedit (2.5.1 ds-1 b3 [s390x], 2.5.1 ds-1 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, x32], 2.5.1 ds-1 b1 [alpha, hppa, ia64, m68k, sh4, sparc64])
- graphical user interface to Ab Initio packages
- galileo (0.5.1-11)
- Utility to securely synchronize a Fitbit device with the Fitbit web service
- galileo-daemon (0.5.1-11)
- Utility to securely synchronize a Fitbit device - daemon
- galvani (0.38-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, x32], 0.34-1 [ia64])
- reads data from a device with graphical plots and evaluation
- gamgi (0.17.5-1 b2 [arm64, riscv64], 0.17.5-1 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- 分子建模工具(GAMGI)
- gamgi-data (0.17.5-1)
- General Atomistic Modelling Graphic Interface (data)
- garli (2.1-9 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.1-7 b1 [ia64])
- phylogenetic analysis of molecular sequence data using maximum-likelihood
- garli-examples (2.1-9)
- phylogenetic analysis of molecular sequence data (examples)
- garli-mpi (2.1-9 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.1-7 b1 [ia64])
- phylogenetic analysis of molecular sequence data using maximum-likelihood (MPI)
- garlic (1.6-3 b1 [amd64, arm64, riscv64], 1.6-3 [alpha, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- visualization program for biomolecules
- gasic (0.0.r19-8)
- genome abundance similarity correction
- gasic-examples (0.0.r19-8)
- genome abundance similarity correction (example data)
- gatb-core (1.4.2 dfsg-13 b3 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, sparc64], 1.4.2 dfsg-13 b2 [x32], 1.4.2 dfsg-13 b1 [alpha, ia64], 1.4.2 dfsg-10 [hppa])
- Genome Analysis Toolbox with de-Bruijn graph
- gatb-core-testdata (1.4.2 dfsg-13)
- Genome Analysis Toolbox with de-Bruijn graph (test data)
- gausssum (3.0.2-2)
- 化学工具，解析和显示 Gaussian、GAMESS 等输出结果
- gbrowse (2.56 dfsg-12)
- GMOD Generic Genome Browser
- gbrowse-calign (2.56 dfsg-12 b3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.56 dfsg-12 b2 [ia64])
- CAlign helper
- gbrowse-data (2.56 dfsg-12)
- Sample data to use GBrowse
- gbutils (6.3-1 b2 [riscv64], 6.3-1 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32], 6.3-1 [ia64])
- utilities for command line econometrics
- gchempaint (0.14.17-6.2 b2 [riscv64], 0.14.17-6.2 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64el, s390x, sh4, sparc64], 0.14.17-1 b1 [ppc64], 0.14.15-1 [x32])
- 2D chemical structures editor for the GNOME2 desktop
- gcrystal (0.14.17-6.2 b2 [riscv64], 0.14.17-6.2 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64el, s390x, sh4, sparc64], 0.14.17-1 b1 [ppc64], 0.14.15-1 [x32])
- 轻量级的晶体结构观察器
- gcu-bin (0.14.17-6.2 b2 [riscv64], 0.14.17-6.2 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64el, s390x, sh4, sparc64], 0.14.17-1 b1 [ppc64], 0.14.15-1 [x32])
- GNOME chemistry utils (helper applications)
- gcu-plugin (0.14.17-1 b1 [ppc64], 0.14.15-1 [x32]) [debports]
- GNOME chemistry utils (browser plugin)
- gdal-bin (3.9.3 dfsg-1 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.9.3 dfsg-1 b1 [alpha, hppa, m68k, sh4], 3.9.3 dfsg-1 [x32], 3.8.5 dfsg-1 [ia64])
- Geospatial Data Abstraction Library - Utility programs
- gdal-data (3.9.3 dfsg-1)
- Geospatial Data Abstraction Library - Data files
- gdal-plugins (3.9.3 dfsg-1 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.9.3 dfsg-1 b1 [alpha, hppa, m68k, sh4], 3.9.3 dfsg-1 [x32], 3.8.5 dfsg-1 [ia64])
- Geospatial Data Abstraction Library - Plugins
- gdis (0.90-6 b2 [ppc64, riscv64, s390x, x32], 0.90-6 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64el, sh4, sparc64])
- 分子和晶体模型查看器
- gdis-data (0.90-6)
- molecular and crystal model viewer (data files)
- gdl-astrolib (2022.09.12 dfsg-2)
- Low-level astronomy software for GDL
- gdl-coyote (2022.04.12-1)
- GDL library from D. Fannings IDL courses
- gdl-mpfit (1.85 2017.01.03-4)
- Robust non-linear least squares curve fitting for GDL
- gdpc (2.2.5-16 b2 [arm64, riscv64], 2.2.5-16 b1 [amd64, mips64el, ppc64el, x32], 2.2.5-11 [alpha, hppa, ia64, m68k, ppc64, sh4, sparc64])
- 分子动力学模拟与可视化
- gdpc-examples (2.2.5-16)
- example files for the gdpc program
- gelemental (2.0.2-1.1 b2 [amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64el, riscv64, s390x], 2.0.2-1.1 b1 [m68k, ppc64, sh4, sparc64, x32], 2.0.2-1.1 [alpha, ia64])
- 查看元素周期表
- gemma (0.98.5 dfsg-3)
- Genome-wide Efficient Mixed Model Association
- gemma-doc (0.98.5 dfsg-3)
- Example folder for GEMMA
- gemmi (0.6.5 ds-2 b1 [arm64], 0.6.5 ds-2 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.4.9 ds-1 [ia64])
- library for structural biology - executable
- genometester (4.0 git20200511.91cecb5 dfsg-1 b1 [arm64, riscv64], 4.0 git20200511.91cecb5 dfsg-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- toolkit for performing set operations on k-mer lists
- genomethreader (1.7.3 dfsg-10 b2 [arm64, mips64el], 1.7.3 dfsg-10 b1 [alpha, amd64, armel, armhf, hppa, i386, m68k, ppc64, ppc64el, riscv64, s390x, sh4, x32])
- software tool to compute gene structure predictions
- genometools (1.6.5 ds-2.2)
- versatile genome analysis toolkit
- genometools-common (1.6.5 ds-2.2)
- shared data files for GenomeTools
- genomicsdb-tools (1.5.4-2)
- sparse array storage library for genomics (tools)
- gentle (1.9.5~alpha2 dfsg1-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.9.5~alpha1 dfsg-1 [m68k], 1.9 cvs20100605 dfsg1-10 [ia64])
- suite for molecular cloning and sequence analysis
- geographiclib-tools (2.4-1 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.4-1 [alpha], 2.3-1 [ia64])
- C library to solve some geodesic problems -- tools
- geotiff-bin (1.7.3-1 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.7.3-1 [alpha], 1.7.1-5 [ia64])
- GeoTIFF (geografic enabled TIFF) library -- tools
- gerris (20131206 dfsg-21 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 20131206 dfsg-19.1 b1 [ia64])
- Fluid Flow Solver
- getdata (0.2-4)
- management of external databases
- gff2aplot (2.0-15 b1 [arm64], 2.0-15 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- pair-wise alignment-plots for genomic sequences in PostScript
- gff2ps (0.98l-6)
- produces PostScript graphical output from GFF-files
- gffread (0.12.7-8 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.12.7-4 [ia64])
- GFF/GTF format conversions, region filtering, FASTA sequence extraction
- gfsview (20121130 dfsg-7) [debports]
- graphical viewer for Gerris simulation files
- gfsview-batch (20121130 dfsg-8.1 b4 [alpha, amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 20121130 dfsg-8.1 b3 [hppa, m68k, sh4], 20121130 dfsg-8 [ia64])
- batch-version of viewer for Gerris simulation files
- gftl-dev (1.3.0 is-really-1.2.7-1)
- Containers and iterators for Fortran
- gftl-shared-dev (1.0.7-2 b1 [riscv64], 1.0.7-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Common gFTL containers of Fortran intrinsic types
- ggd-utils (1.0.0 ds-1 b12 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, s390x], 1.0.0 ds-1 b9 [alpha, ppc64, x32], 1.0.0 ds-1 b8 [sparc64], 1.0.0 ds-1 b7 [riscv64])
- programs for use in ggd
- ghkl (5.1.2-2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sparc64], 5.0.0.3462-1 [alpha], 5.0.0.3381-1 [m68k, ppc64, sh4], 5.0.0.3001-1 [hppa], 5.0.0.2661-1 b1 [x32])
- diffractometer computation control application
- ghmm (0.9~rc3-10 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.9~rc3-6 [ia64])
- General Hidden-Markov-Model library - tools
- ginga (5.2.0-1)
- Astronomical image viewer
- gjh-asl-json (0.0 git20210628.867c5da-1 b1 [arm64, riscv64], 0.0 git20210628.867c5da-1 [alpha, amd64, ia64, mips64el, ppc64, ppc64el, s390x, sparc64])
- gjh solver, like solver from AMPL Library
- glam2 (1064-10 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1064-9 [ia64])
- gapped protein motifs from unaligned sequences
- glgrib-data (1.0-4)
- Display GRIB2 fields using OpenGL (data for glgrib)
- glgrib-egl (1.0-4 b2 [alpha, amd64, arm64, hppa, mips64el, ppc64, ppc64el, riscv64, sparc64, x32], 1.0-3 b3 [ia64], 1.0-3 b2 [m68k, sh4])
- Render geophysical fields encoded in GRIB edition 2 using OpenGL
- glgrib-glfw (1.0-4 b2 [alpha, amd64, arm64, hppa, mips64el, ppc64, ppc64el, riscv64, sparc64, x32], 1.0-3 b3 [ia64], 1.0-3 b2 [m68k, sh4])
- Interactive display for geophysical fields encoded in GRIB2
- glgrib-shaders (1.0-4)
- Display GRIB2 fields using OpenGL (shaders for glgrib)
- glgrib-testdata (1.0-4)
- Display GRIB2 fields using OpenGL (test data for glgrib)
- glgrib-tk (1.0-4 b2 [alpha, amd64, arm64, hppa, mips64el, ppc64, ppc64el, riscv64, sparc64, x32], 1.0-3 b3 [ia64], 1.0-3 b2 [m68k, sh4])
- Display GRIB2 fields using OpenGL (Perl/Tk interface)
- gliese (3.0.95-3) [non-free]
- stellar data set from the Third Catalogue of Nearby Stars
- glueviz (1.17.1 dfsg-2)
- Linked data visualization
- glvis (4.3-1)
- accurate and flexible finite element visualization
- gmap (2024-11-20 ds-1)
- spliced and SNP-tolerant alignment for mRNA and short reads
- gmt (6.5.0 dfsg-3 b2 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 6.5.0 dfsg-3 b1 [alpha, sh4], 6.4.0 dfsg-2 b1 [ia64])
- Generic Mapping Tools
- gmt-common (6.5.0 dfsg-3)
- Generic Mapping Tools - Architecture-independent files
- gmt-dcw (2.2.0-1)
- Digital Chart of the World (DCW) for GMT
- gmt-gshhg (2.3.7-6)
- Global Self-consistent Hierarchical High-resolution Geography (GSHHG)
- gmt-gshhg-full (2.3.7-6)
- Full resolution coastlines for the Generic Mapping Tools
- gmt-gshhg-high (2.3.7-6)
- High resolution coastlines for the Generic Mapping Tools
- gmt-gshhg-low (2.3.7-6)
- Low resolution coastlines for the Generic Mapping Tools
- gmtsar (6.5 ds-2)
- InSAR processing system based on Generic Mapping Tools - metapackage
- gmtsar-core (6.5 ds-2 b2 [arm64], 6.5 ds-2 b1 [amd64, i386, ppc64, ppc64el, s390x, sparc64])
- InSAR processing system based on Generic Mapping Tools - core
- gmtsar-data (6.5 ds-2)
- InSAR processing system based on Generic Mapping Tools - data
- gmtsar-scripts (6.5 ds-2)
- InSAR processing system based on Generic Mapping Tools - scripts
- gnuastro (0.23-2 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.23-2 [alpha], 0.22-3.1 b1 [ia64])
- GNU Astronomy Utilities programs
- goby-java (3.3.1 dfsg2-11)
- next-generation sequencing data and results analysis tool
- gpaw (24.6.0-1 b1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x], 24.6.0-1 [sparc64], 24.1.0-1 [hppa, m68k, sh4], 20.1.0-2 [x32])
- DFT and beyond within the projector-augmented wave method
- gpaw-data (24.11.0-1)
- gpaw datasets/setups
- gperiodic (3.0.3-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.0.3-1 b1 [ia64])
- 小型的元素周期表程序
- gpx (2.6.8-1 b1 [arm64, riscv64], 2.6.8-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Gcode to x3g conversion post processor
- grabix (0.1.7-5 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.1.7-4 [alpha, ia64])
- wee tool for random access into BGZF files
- graphlan (1.1.3-6)
- circular representations of taxonomic and phylogenetic trees
- grass (8.4.0-1)
- Geographic Resources Analysis Support System (GRASS GIS)
- grass-core (8.4.0-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 8.3.0-1 [m68k], 7.8.3-1 b1 [ia64])
- GRASS GIS core components
- grass-gui (8.4.0-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 8.3.0-1 [m68k], 7.8.3-1 b1 [ia64])
- GRASS GIS graphical user interfaces
- gravit (0.5.1 dfsg-6 b2 [arm64, riscv64], 0.5.1 dfsg-6 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- visually stunning gravity simulator
- gravit-data (0.5.1 dfsg-6)
- data files for Gravit
- gri (2.12.27-1.2)
- a language for scientific illustration
- grinder (0.5.4-6)
- Versatile omics shotgun and amplicon sequencing read simulator
- gromacs (2024.4-1 b1 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 2023.1-2 [ia64], 2021.4-2 [hppa, m68k, sh4, x32], 2020.5-4 [alpha])
- Molecular dynamics simulator, with building and analysis tools
- gromacs-data (2024.4-1)
- GROMACS molecular dynamics sim, data and documentation
- gromacs-mpi (2021.4-2) [debports]
- Molecular dynamics sim, binaries for MPI parallelization
- gromacs-mpich (2020.5-4) [debports]
- Molecular dynamics sim, binaries for MPICH parallelization
- gromacs-openmpi (2020.5-4) [debports]
- Molecular dynamics sim, binaries for OpenMPI parallelization
- groops (0 git20240830 ds-1 b1 [amd64, arm64, mips64el, ppc64el, riscv64, s390x], 0 git20240830 ds-1 [armhf, i386]) [non-free]
- software toolkit for gravity field recovery and GNSS processing
- groops-gui (0 git20240830 ds-1 b1 [amd64, arm64, mips64el, ppc64el, riscv64, s390x], 0 git20240830 ds-1 [armhf, i386]) [non-free]
- software toolkit for gravity field recovery and GNSS processing (GUI)
- gsort (0.1.4-3 b18 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, s390x], 0.1.4-3 b10 [ppc64, x32], 0.1.4-3 b9 [alpha, riscv64], 0.1.4-3 b8 [sparc64])
- sort genomic data
- gubbins (3.4-1 [amd64, i386], 2.3.5-1 [alpha, m68k, ppc64, riscv64])
- phylogenetic analysis of genome sequences
- gvb (1.4-1.1)
- visual simulator of 1 and 2-dimensional vibrations
- gwama (2.2.2 dfsg-6 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.2.2 dfsg-5 [ia64])
- Genome-Wide Association Meta Analysis
- gwyddion (2.67-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.64-1.1 b1 [ia64])
- Scanning Probe Microscopy visualization and analysis tool
- gwyddion-common (2.67-1)
- architecture-independent files for Gwyddion SPM analysis tool
- gyoto (2.0.2-5)
- General relativistic geodesic integration and ray-tracing
- gyoto-bin (2.0.2-5 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 2.0.2-1.1 [ia64], 1.4.4-8 b4 [sh4], 1.2.0-4 b5 [x32])
- General relativistic ray-tracing command-line interface
- h5utils (1.13.2-1 b3 [arm64, riscv64], 1.13.2-1 b2 [amd64, armel, armhf, i386, mips64el, ppc64, ppc64el, s390x, sparc64, x32], 1.13.2-1 b1 [alpha, hppa, ia64, m68k, sh4])
- HDF5 files visualization tools
- harminv (1.4.2-1 b1 [arm64, riscv64], 1.4.2-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- extraction of complex frequencies and amplitudes from time series
- harvest-tools (1.3-8 b6 [armel, armhf], 1.3-8 b5 [arm64], 1.3-8 b4 [alpha, amd64, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32], 1.3-8 b3 [hppa, riscv64])
- archiving and postprocessing for reference-compressed genomic multi-alignments
- hdf-compass (0.7~b15-1)
- viewer for HDF5 and related formats
- hdf5-filter-plugin (0.0~git20221111.49e3b65-4 b3 [arm64, riscv64], 0.0~git20221111.49e3b65-4 b2 [amd64, armel, armhf, i386, mips64el, ppc64, ppc64el, s390x, x32], 0.0~git20221111.49e3b65-4 b1 [alpha, hppa, ia64, m68k, sh4])
- external filters for HDF5: LZ4, BZip2, Bitshuffle
- hdf5-filter-plugin-blosc-serial (0.0~git20220616.9683f7d-5 b3 [arm64, riscv64], 0.0~git20220616.9683f7d-5 b2 [amd64, armel, armhf, i386, mips64el, ppc64, ppc64el, s390x, sparc64, x32], 0.0~git20220616.9683f7d-5 b1 [alpha, hppa, ia64, m68k, sh4])
- blocking, shuffling and lossless compression library
- hdf5-filter-plugin-zfp-serial (1.1.1-2 b3 [arm64], 1.1.1-2 b2 [amd64, armel, armhf, i386, mips64el, ppc64el, riscv64, x32], 1.1.1-2 b1 [alpha, ia64, sh4])
- Compression plugin for the HDF5 library using ZFP compression
- hdf5-helpers (1.14.5 repack-1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 1.10.10 repack-5 b1 [m68k, sh4], 1.10.10 repack-5 [alpha], 1.10.10 repack-3.3 [hppa, ia64])
- HDF5 - Helper tools
- hdf5-plugin-zfp (1.1.0 git20221021-2) [debports]
- Compression plugin for the HDF5 library using ZFP compression
- hdf5-plugin-zfp
- 本虚包由这些包填实： hdf5-filter-plugin-zfp-serial
- hdf5-tools (1.14.5 repack-1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 1.10.10 repack-5 b1 [m68k, sh4], 1.10.10 repack-5 [alpha], 1.10.10 repack-3.3 [hppa, ia64])
- HDF5 - Runtime tools
- herisvm (0.9.0-2)
- machine learning tools for classification algorithms
- heudiconv (1.3.2-1)
- DICOM converter with support for structure heuristics
- hfst (3.16.1-3 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.16.0-5 b2 [alpha], 3.16.0-5 b1 [ia64])
- Helsinki Finite-State Transducer Technology
- hfst-ospell (0.5.4-1 b2 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.5.4-1 b1 [alpha, ia64])
- Spell checker library and tool based on HFST
- hhsuite (3.3.0 ds-8 b3 [riscv64], 3.3.0 ds-8 b2 [amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64el, sh4, x32], 3.3.0 ds-8 b1 [alpha], 3.3.0 ds-8 [ia64], 3.3.0 ds-2 [hppa, ppc64, sparc64])
- sensitive protein sequence searching based on HMM-HMM alignment
- hhsuite-data (3.3.0 ds-8)
- sensitive protein sequence searching based on HMM-HMM alignment (data)
- hilive (2.0a-4 b1 [arm64, x32], 2.0a-4 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 2.0a-3 b3 [ia64])
- realtime alignment of Illumina reads
- hinge (0.5.0-7 b3 [arm64], 0.5.0-7 b2 [amd64, armel, armhf, i386, m68k, mips64el, ppc64el, riscv64], 0.5.0-7 [alpha], 0.5.0-6 [x32], 0.5.0-2 [hppa, ppc64, sparc64])
- long read genome assembler based on hinging
- hisat2 (2.2.1-5 b2 [arm64], 2.2.1-5 b1 [amd64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 2.2.1-5 [alpha, hppa], 2.2.1-4 b3 [ia64], 2.2.0-2 [x32])
- graph-based alignment of short nucleotide reads to many genomes
- hmmer (3.4 dfsg-2 b1 [arm64], 3.4 dfsg-2 [amd64, i386, ppc64, x32], 3.1b2-1 [alpha, hppa, m68k, sh4, sparc64])
- profile hidden Markov models for protein sequence analysis
- hmmer2 (2.3.2 dfsg-12 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.3.2 dfsg-12 [alpha, ia64])
- profile hidden Markov models for protein sequence analysis
- hodie (1.5.0-4 b1 [arm64], 1.5.0-4 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- prints the date in Latin
- horae (071~svn537 ds1-1) [contrib]
- interactive graphical processing and analysis of EXAFS data
- hpcc (1.5.0-4 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.5.0-4 [ia64])
- HPC Challenge benchmark
- htcondor (23.6.2 dfsg-2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 23.4.0 dfsg-1 [alpha, m68k, sh4, x32], 8.4.2~dfsg.1-1 [hppa])
- transitional dummy package
- htcondor-annex-ec2 (23.6.2 dfsg-2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 23.4.0 dfsg-1 [alpha, m68k, sh4, x32])
- transitional dummy package
- htcondor-test (23.6.2 dfsg-2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 23.4.0 dfsg-1 [alpha, m68k, sh4, x32])
- transitional dummy package
- htcondor-upgrade-checks (23.6.2 dfsg-2)
- transitional dummy package
- hts-nim-tools (0.2.1-2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64], 0.2.1-1 [sparc64])
- tools biological sequences: bam-filter, count-reads, vcf-check
- hyphy-common (2.5.63 dfsg-1)
- Hypothesis testing using Phylogenies (common files)
- hyphy-mpi (2.5.63 dfsg-1 b2 [sparc64], 2.5.63 dfsg-1 b1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x], 2.5.63 dfsg-1 [armel, armhf, hppa, i386, m68k, sh4, x32], 2.5.60 dfsg-1 [ia64])
- Hypothesis testing using Phylogenies (MPI version)
- hyphy-pt (2.5.63 dfsg-1 b2 [sparc64], 2.5.63 dfsg-1 b1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x], 2.5.63 dfsg-1 [armel, armhf, hppa, i386, m68k, sh4, x32], 2.5.60 dfsg-1 [ia64])
- Hypothesis testing using Phylogenies (pthreads version)
- i2masschroq (0.4.54-1) [debports]
- Successor of X!TandemPipeline
- i2masschroq-tools (0.4.54-1) [debports]
- X!Tandem-related utilities for timsTOF pro and modern mzML data
- idba (1.1.3-8 b1 [arm64, riscv64], 1.1.3-8 [alpha, amd64, armel, armhf, hppa, i386, ia64, mips64el, ppc64, ppc64el, s390x, sparc64, x32])
- iterative De Bruijn Graph short read assemblers
- (1.1.3-8 b1 [arm64, riscv64], 1.1.3-8 [alpha, amd64, armel, armhf, hppa, i386, ia64, mips64el, ppc64, ppc64el, s390x, sparc64, x32])
- iterative De Bruijn Graph short read assemblers (extra tools)
- idseq-bench (0.0~git20210602.27fb6dc-1)
- Benchmark generator for the IDseq Portal
- ifeffit (2:1.2.11d-12.6 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 2:1.2.11d-12.5 b2 [ia64])
- Interactive XAFS analysis program
- igblast (1.19.0-1 b2 [arm64, riscv64], 1.19.0-1 b1 [amd64, ia64, mips64el, ppc64, ppc64el, s390x, x32])
- Immunoglobulin and T cell receptor variable domain sequence analysis
- ignition-common-cli (4.5.1 ds-2 b1 [riscv64], 4.5.1 ds-2 [ia64]) [debports]
- Collection of useful code used by robotics apps - CLI tools
- ignition-transport-cli (11.0.0 ds-4 b2 [ia64], 11.0.0 ds-4 b1 [riscv64]) [debports]
- Ignition Robotics transport Library - CLI tools
- igor (1.4.0 dfsg-5 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.4.0 dfsg-5 [ia64])
- infers V(D)J recombination processes from sequencing data
- igv (2.18.5 dfsg-1)
- Integrative Genomics Viewer
- iitii (0.0 git20191030.85209e0-3)
- Implicit Interval Tree with Interpolation Index
- illustrate (0.0 git20200923.217db48-2 b2 [arm64], 0.0 git20200923.217db48-2 b1 [amd64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 0.0 git20200923.217db48-2 [alpha, hppa, ia64, m68k, ppc64, sh4, sparc64, x32])
- cartoonish representations of large biological molecules
- imagej (1.54g-1)
- Image processing program with a focus on microscopy images
- imview (1.1.9h-4 b3 [arm64], 1.1.9h-4 b2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Image viewing and analysis application
- indelible (1.03-6 b1 [arm64], 1.03-6 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- powerful and flexible simulator of biological evolution
- indi-aagcloudwatcher-ng (1.7 20230106180155-1 b1 [arm64, riscv64], 1.7 20230106180155-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- INDI driver for the AAG Cloud Watcher
- indi-aok (2.0 20221222093242-1 b2 [arm64, riscv64], 2.0 20221222093242-1 b1 [amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64el, s390x, sh4], 2.0 20221222093242-1 [alpha, ia64, ppc64, sparc64, x32])
- INDI driver for AOK Skywalker
- indi-apogee (1.9 20221223184417-2 b1 [arm64], 1.9 20221223184417-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- INDI driver for Apogee CCDs and Filter Wheels
- indi-armadillo-platypus (1.0 20221226082641-2 b2 [arm64], 1.0 20221226082641-2 b1 [amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.0 20221226082641-2 [alpha])
- INDI driver for Lunatico Astronomia Armadillo and Platypus
- indi-asi (2.2 20221225102500-1) [contrib]
- INDI Driver for ZWO Optics ASI cameras
- indi-astrolink4 (0.1 20221223182627-1 b1 [arm64, riscv64], 0.1 20221223182627-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- INDI driver for Astrolink 4.0 devices
- indi-astromechfoc (0.2 20221223181816-1 b1 [arm64, riscv64], 0.2 20221223181816-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- INDI driver for Astromechanics Canon Lens Controller
- indi-avalon (1.12 20221223132122-1 b1 [arm64, riscv64], 1.12 20221223132122-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- INDI driver for Avalon Instruments mounts
- indi-beefocus (0.1 20221222010828-1 b1 [arm64, riscv64], 0.1 20221222010828-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- INDI driver for Bee Focus
- indi-bresserexos2 (1.0 20221223130124-1 b2 [arm64, riscv64], 1.0 20221223130124-1 b1 [amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64el, s390x, sh4], 1.0 20221223130124-1 [alpha, ia64, ppc64, sparc64, x32])
- INDI driver for Exos II GoTo Telescope Mount
- indi-dreamfocuser (2.1 20221223125100-1 b1 [arm64, riscv64], 2.1 20221223125100-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- INDI driver for DeamFocuser focuser
- indi-dsi (0.4 20221223123028-2 b1 [arm64], 0.4 20221223123028-2 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.4 20221223123028-1 [ia64])
- INDI driver for Meade DSI Pro I/II/III
- indi-eqmod (1.0 20230126190232-1 b2 [arm64, riscv64], 1.0 20230126190232-1 b1 [amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64el, s390x, sh4], 1.0 20230126190232-1 [alpha, ia64, ppc64, x32], 1.0 20220611123707-1 [sparc64])
- INDI EQMod Driver
- indi-ffmv (0.3 20221223120905-2 b2 [arm64], 0.3 20221223120905-2 b1 [amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.3 20221223120905-2 [alpha])
- INDI driver for Point Grey Firefly MV cameras
- indi-fishcamp (1.1-2) [contrib]
- INDI driver for Fishcamp Engineering CCD
- indi-fli (1.5 20221225141318-1 b1 [arm64, riscv64], 1.5 20221225141318-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- INDI driver for FLI CCD & Focuser
- indi-gige (0.1 20221223115700-2 b1 [arm64], 0.1 20221223115700-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- INDI driver for GigE machine vision cameras
- indi-gphoto (3.2 20221221172841-2 b3 [arm64], 3.2 20221221172841-2 b2 [amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.2 20221221172841-2 b1 [alpha])
- INDI driver for GPhoto (DSLR) Cameras
- indi-gpsd (0.5 20221222000619-1 b4 [arm64, sh4], 0.5 20221222000619-1 b3 [amd64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 0.5 20221222000619-1 b2 [alpha, hppa, ia64, m68k, ppc64, sparc64, x32])
- INDI driver for gpsd GPS daemon
- indi-gpsnmea (0.2 20221223114018-1 b1 [arm64, riscv64], 0.2 20221223114018-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- INDI driver for GPS NMEA streams
- indi-inovaplx (1.4 20221221105828-2) [contrib]
- INDI driver for iNova PLX Cameras
- indi-limesdr (1.4 20221223110308-1 b2 [arm64, riscv64], 1.4 20221223110308-1 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- INDI driver for LimeSDR (LMS7) Receiver
- indi-maxdomeii (1.3 20221223105522-1 b1 [arm64, riscv64], 1.3 20221223105522-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- INDI driver for MaxDome II dome control system
- indi-mgen (0.1 20221222184336-1 b1 [arm64, riscv64], 0.1 20221222184336-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- INDI driver for Lacerta MGen Autoguider
- indi-mi (1.8-1) [contrib]
- INDI driver for cameras made by Moravian Instruments
- indi-nexdome (1.5 20221222183051-1 b1 [arm64, riscv64], 1.5 20221222183051-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- INDI driver for NexDome
- indi-nightscape (1.0.6 20221222181314-2 b2 [arm64], 1.0.6 20221222181314-2 b1 [amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.0.6 20221222181314-2 [alpha])
- INDI driver for Celestron Nightscape 8300
- indi-orion-ssg3 (0.1 20221222180647-2 b2 [arm64], 0.1 20221222180647-2 b1 [amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.1 20221222180647-2 [alpha])
- INDI Driver for Orion StarShoot G3 and G4 cameras
- indi-pentax (1.0 20221221102411-2) [contrib]
- INDI driver for Pentax cameras
- indi-playerone (0.9 20230105184731-3) [contrib]
- INDI driver for cameras made by Playerone
- indi-rtklib (1.0 20221222172722-1 b1 [arm64, riscv64], 1.0 20221222172722-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- INDI driver for precise positioning with RTKLIB
- indi-sbig (2.1 20221220234924-4) [contrib]
- INDI driver for SBIG cameras
- indi-shelyak (1.0 20221222171819-1 b1 [arm64, riscv64], 1.0 20221222171819-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- INDI driver for Shelyak and Alpy Spectrograph
- indi-spectracyber (1.3 20221222164952-1 b2 [arm64, riscv64], 1.3 20221222164952-1 b1 [amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64el, s390x, sh4], 1.3 20221222164952-1 [alpha, ia64, ppc64, sparc64, x32])
- INDI driver for hydrogen line spectrometer
- indi-starbook (0.8 20221222163625-1 b2 [arm64, riscv64], 0.8 20221222163625-1 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- INDI driver for Vixen Starbook telescope controllers
- indi-starbook-ten (0.1-2 b3 [arm64], 0.1-2 b2 [amd64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 0.1-2 b1 [hppa, m68k, sh4], 0.1-2 [alpha, ia64, ppc64, sparc64, x32])
- INDI driver for Vixen Starbook Ten telescope controllers
- indi-sx (1.16 20221222162728-2 b2 [arm64], 1.16 20221222162728-2 b1 [amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.16 20221222162728-2 [alpha])
- INDI driver for Starlight Xpress CCD and Filter Wheel
- indi-talon6 (2.0 20221222160901-1 b1 [arm64, riscv64], 2.0 20221222160901-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- INDI driver for Talon6 Roll Off Roof
- indi-webcam (1.0 20221222161740-1 b2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.0 20221222161740-1 b1 [ia64])
- INDI Driver for web cameras
- indi-weewx-json (1.0-1 b2 [amd64, arm64, riscv64], 1.0-1 b1 [alpha, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- INDI driver for the WeeWX Weather Station
- indigo-utils (1.2.3-3.1 b1 [arm64, m68k, riscv64, sh4], 1.2.3-3.1 [alpha, amd64, armel, armhf, i386, ia64, mips64el, ppc64, ppc64el, s390x, sparc64])
- Organic Chemistry Toolkit Utilities
- infernal (1.1.5-3 [amd64, arm64, i386, x32], 1.0.2-2 [alpha, m68k, ppc64, sh4, sparc64], 1.0.2-1 [hppa])
- inference of RNA secondary structural alignments
- inhomog (0.1.9.2-1 b4 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, s390x], 0.1.9.2-1 b3 [alpha, hppa, m68k, ppc64, sh4, sparc64, x32], 0.1.9.2-1 b2 [ia64, riscv64])
- kinematical backreaction and average scale factor evolution
- inkscape-speleo (1.8-4)
- Inkscape plugin to help draw surveys
- inkscape-survex-export (2.0-1)
- Inkscape plugin to digitise printed surveys
- insilicoseq (2.0.1-1)
- sequencing simulator producing realistic Illumina reads
- ipig (0.0.r5-5 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.0.r5-4 [ia64])
- integrating PSMs into genome browser visualisations
- iqtree (2.0.7 dfsg-1 b2)
- efficient phylogenetic software by maximum likelihood
- iraf (2.18.1~rc1-2)
- Image Reduction and Analysis Facility
- iraf-dev (2.18.1~rc1-2)
- Image Reduction and Analysis Facility (development files)
- iraf-fitsutil (2024.07.06-1)
- FITS utilities for IRAF
- iraf-mscred (5.05 2018.07.09-3 b1)
- CCD mosaic reduction package for IRAF
- iraf-noao (2.18.1~rc1-2)
- IRAF NOAO data reduction package
- iraf-noao-dev (2.18.1~rc1-2)
- IRAF NOAO data reduction package (development files)
- iraf-rvsao (2.8.5-2 b1)
- IRAF package to obtain radial velocities from spectra
- iraf-sptable (1.0~pre20180612-3 b1)
- IRAF package for Tabular Spectra
- iraf-st4gem (1.0 ds-3)
- Selected tools from the Space Telescope Science Data Analysis System
- iraf-wcstools (3.9.7-1.1)
- Handle the WCS of a FITS image (IRAF package)
- iraf-xdimsum (2003.01.24-2)
- Deep Infrared Mosaicing Software
- irstlm (6.00.05-5 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 6.00.05-4.1 [ia64])
- IRST Language Modeling Toolkit
- ismrmrd-schema (1.8.0-2)
- schema for ISMRMRD
- ismrmrd-tools (1.8.0-2 b6 [amd64, arm64, armel, i386, mips64el, ppc64el, riscv64, s390x, x32], 1.8.0-2 b5 [ppc64], 1.8.0-2 b4 [hppa, m68k, sh4], 1.8.0-2 b3 [alpha, ia64], 1.3.2-2 [sparc64])
- command-line tools for ISMRMRD
- iso2mesh-demos (1.9.8 ds-1)
- sample files and demo scripts for Iso2Mesh toolbox
- iso2mesh-tools (1.9.8 ds-1 [amd64, arm64, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.9.6 ds-9 [alpha], 1.9.6 ds-7 [hppa, m68k, x32])
- 3D mesh generation and repairing utilities
- iva (1.0.11 ds-6 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64el, riscv64, sh4, x32], 1.0.11 ds-5 [ia64])
- iterative virus sequence assembler
- ivar (1.4.3 dfsg-2 b1 [arm64], 1.4.3 dfsg-2 [amd64, hppa, i386, m68k, mips64el, riscv64, sh4, sparc64, x32])
- functions broadly useful for viral amplicon-based sequencing
- jaligner (1.0 dfsg-11)
- Smith-Waterman algorithm with Gotoh's improvement
- jalview (2.11.4.0 dfsg-3)
- multiple alignment editor
- jblas (1.2.5 dfsg-1 b1 [riscv64], 1.2.5 dfsg-1 [alpha, amd64, arm64, armel, armhf, i386, ia64, mips64el, ppc64el, s390x, sh4, sparc64, x32], 1.2.4-3 [m68k], 1.2.4-1 [hppa])
- fast linear algebra library for Java
- jbmc (6.1.1-2 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 5.95.1-4 [ia64])
- bounded model checker for Java programs
- jellyfish (2.3.1-4 [amd64, arm64, mips64el, ppc64el, riscv64], 2.3.1-2 b1 [hppa], 2.3.0-12 [ia64])
- count k-mers in DNA sequences
- jellyfish-examples (2.3.1-4)
- count k-mers in DNA sequences (examples for testing)
- jellyfish1 (1.1.11-10 [amd64, arm64, hppa, mips64el, ppc64el, riscv64], 1.1.11-9 [ia64], 1.1.11-7 [alpha, ppc64, sparc64, x32])
- count k-mers in DNA sequences
- jemboss (6.6.0 dfsg-15)
- graphical user interface to EMBOSS
- jmodeltest (2.1.10 dfsg-12)
- HPC selection of models of nucleotide substitution
- jmol (16.2.33 dfsg-1)
- Molecular Viewer
- jnifti-demos (0.6-3)
- sample files and demo scripts for JNIfTI toolbox
- jsamp (1.3.9-1)
- Java Simple Application Messaging Protocol tool for VO
- jube (2.7.1-2)
- JUBE Benchmarking Environment
- jupyter-notebook (6.4.13-5)
- Jupyter interactive notebook
- kalign (1:3.4.0-1 b2 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1:3.4.0-1 b1 [alpha], 1:3.4.0-1 [ia64])
- Global and progressive multiple sequence alignment
- kallisto (0.48.0 dfsg-4 b3 [mips64el], 0.48.0 dfsg-4 b2 [arm64, riscv64], 0.48.0 dfsg-4 b1 [amd64, ppc64, ppc64el, s390x, sparc64], 0.48.0 dfsg-4 [alpha], 0.48.0 dfsg-2 [ia64], 0.46.2 dfsg-3 [hppa, m68k, sh4, x32])
- near-optimal RNA-Seq quantification
- kallisto-examples (0.48.0 dfsg-4)
- near-optimal RNA-Seq quantification (example data)
- kalzium (4:24.12.0-1 [amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x], 4:23.08.5-1 [alpha], 4:22.12.3-1 [m68k, sh4], 4:22.12.0-2 [x32], 4:19.08.1-1 [sparc64])
- periodic table and chemistry tools
- kalzium-data (4:24.12.0-1)
- data files for Kalzium
- kaptive (2.0.8-1)
- obtain information about K and O types for Klebsiella genome assemblies
- kaptive-data (2.0.8-1)
- reference data for kaptive for Klebsiella genome assemblies
- kaptive-example (2.0.8-1)
- example data for kaptive for Klebsiella genome assemblies
- khmer (3.0.0~a3 dfsg-8 b1 [amd64], 2.1.2 dfsg-9 [ia64], 2.0 dfsg-5 [sparc64])
- in-memory DNA sequence kmer counting, filtering & graph traversal
- khmer-common (3.0.0~a3 dfsg-8)
- common files for the khmer project tools
- kineticstools (0.6.1 git20220223.1326a4d dfsg-3)
- detection of DNA modifications
- kineticstools-data (0.6.1 git20220223.1326a4d dfsg-3)
- detection of DNA modifications -- data files
- king-probe (02.21-1 b1 [arm64, riscv64], 02.21-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Evaluate and visualize protein interatomic packing
- kissat (4.0.1-3)
- Keep it simple and clean bare metal SAT solver
- kissplice (2.6.7-1 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, sparc64], 2.6.2-3 [ia64], 2.5.3-1 [x32], 2.2.1-1 [alpha, m68k], 2.1.0-1 [hppa, sh4])
- Detection of various kinds of polymorphisms in RNA-seq data
- kleborate (2.4.1-3 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x], 2.1.0-2 [m68k])
- tool to screen Klebsiella genome assemblies
- kleborate-examples (2.4.1-3)
- tool to screen Klebsiella genome assemblies (example data)
- klustakwik (3.0.2 ds-2 b1 [arm64, riscv64], 3.0.2 ds-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- automatic sorting of the samples (spikes) into clusters
- kma (1.4.15-1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 1.4.14-2 [ia64], 1.3.23-1 [hppa, m68k, sh4])
- mapping genomic sequences to raw reads directly against redundant databases
- kmc (3.2.4 dfsg-1 b2 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 3.2.4 dfsg-1 b1 [alpha], 3.1.1 dfsg-4 [ia64], 2.3 dfsg-10 [x32])
- count kmers in genomic sequences
- kmer (0~20150903 r2013-9)
- suite of tools for DNA sequence analysis
- kmer-examples (0~20150903 r2013-9)
- sample data for kmer suite of tools for DNA sequence analysis
- kmerresistance (2.2.0-4 b1 [arm64, riscv64], 2.2.0-4 [alpha, amd64, hppa, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- correlates mapped genes with the predicted species of WGS samples
- kokkos (4.3.01-1 b1 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, sparc64], 4.3.01-1 [alpha], 3.7.01-2.1 [ia64], 3.7.01-1 [s390x])
- C Performance Portability Programming
- konclude (0.7.0 1138 git20220514~dfsg-1 b2 [arm64, riscv64], 0.7.0 1138 git20220514~dfsg-1 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- tableau-based description logic reasoner for the semantic web
- kraken (1.1.1-4 b1 [arm64, riscv64], 1.1.1-4 [alpha, amd64, hppa, ia64, mips64el, ppc64, ppc64el, sparc64, x32], 0.10.5~beta-4 [m68k, sh4])
- assigning taxonomic labels to short DNA sequences
- kraken2 (2.1.3-1 b1 [arm64, riscv64], 2.1.3-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- taxonomic classification system using exact k-mer matches
- kst (2.0.8-6 b2 [amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.0.8-6 [alpha, m68k], 2.0.8-5 b5 [ia64])
- scientific data plotting tool
- kstars (5:3.6.2-2 b7 [armel, armhf], 5:3.6.2-2 b5 [amd64, arm64, hppa, i386, mips64el, ppc64el, s390x], 5:3.6.2-2 b4 [riscv64], 5:3.6.2-2 b3 [ppc64], 5:3.6.2-2 b2 [alpha, m68k, sh4], 5:3.5.9-1 [x32], 4:16.08.3-2 [sparc64])
- desktop planetarium, observation planning and telescope control
- kstars-data (5:3.6.2-2)
- data files for KStars desktop planetarium
- (1.1r1-9.1) [non-free]
- Tycho-2 star catalog for KStars
- lagan (2.0-10 b1 [arm64], 2.0-10 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- highly parametrizable pairwise global genome sequence aligner
- lamarc (2.1.10.1 dfsg-7 b5 [arm64, mips64el], 2.1.10.1 dfsg-7 b4 [alpha, amd64, armel, armhf, hppa, i386, ppc64, ppc64el, s390x, sh4, sparc64], 2.1.10.1 dfsg-7 b3 [riscv64], 2.1.10.1 dfsg-7 b2 [x32], 2.1.10.1 dfsg-7 [ia64, m68k])
- Likelihood Analysis with Metropolis Algorithm using Random Coalescence
- lamassemble (1.7.2-2)
- Merges overlapping "long" DNA reads into a consensus sequences
- lambda-align (1.0.3-6 b1 [arm64, riscv64], 1.0.3-6 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Local Aligner for Massive Biological DatA
- lambda-align2 (2.0.1-3)
- Local Aligner for Massive Biological DatA - v2
- lammps (20240207 dfsg-2 [amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4], 20240207 dfsg-1.1 b4 [sparc64], 20240207 dfsg-1.1 b3 [hppa], 20240207 dfsg-1.1 b1 [alpha], 20200303 dfsg1-3 b1 [x32], 0~20180510.gitaa1d815fe-4 [ia64])
- Molecular Dynamics Simulator
- last-align (1542-1 b2 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 1542-1 b1 [alpha], 1542-1 [ia64], 1179-1 [x32])
- genome-scale comparison of biological sequences
- lastz (1.04.22-2 b1 [arm64, riscv64], 1.04.22-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- pairwise aligning DNA sequences
- lastz-examples (1.04.22-2)
- pairwise aligning DNA sequences (examples and test scripts)
- lbt (1.2.2-7 b1 [arm64, riscv64], 1.2.2-7 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- converts from LTL formulas to Büchi automata
- leaff (0~20150903 r2013-9 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0~20150903 r2013-8 b3 [ia64])
- biological sequence library utilities and applications
- lefse (1.1.2-2)
- determine features of organisms, clades, taxonomic units, genes
- lexd (1.3.1-1 b2 [arm64], 1.3.1-1 b1 [alpha, amd64, armel, armhf, i386, ia64, mips64el, ppc64el, riscv64, sh4, x32], 1.3.1-1 [m68k], 1.1.0-1 b2 [hppa])
- Lexicon compiler for non-suffixational morphologies
- libadios-bin (1.13.1-42 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x], 1.13.1-42 b1 [alpha, hppa, m68k, sh4, x32], 1.13.1-36 [ia64], 1.13.1-6 [sparc64])
- ADIOS Adaptable IO system for simulations - binaries
- libadios-examples (1.13.1-42)
- Examples for the ADIOS Adaptable IO system
- libatlas-ecmwf-utils (0.40.0-1 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 0.20.0-1 [alpha], 0.19.0-8 b2 [x32])
- Numerical weather prediction and climate modelling library - utilities
- libball1.5-data (1.5.0 git20180813.37fc53c-11)
- Biochemical Algorithms Library (data files)
- libbio-db-hts-perl (3.01-5 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.01-4 b3 [ia64])
- Perl interface to the HTS library
- libbio-tools-phylo-paml-perl (1.7.3-4)
- Bioperl interface to the PAML suite
- libbio-tools-run-alignment-clustalw-perl (1.7.4-4)
- Bioperl interface to Clustal W
- libbio-tools-run-alignment-tcoffee-perl (1.7.4-3)
- Bioperl interface to T-Coffee
- libca4.14.4 (7.0.8.1 dfsg1-6)
- EPICS channel access client library
- libcamitk3 (3.4.0-2 b1 [sparc64], 3.4.0-2 [hppa, x32], 3.4.0-1 [alpha], 3.2.2-2 [ppc64]) [debports]
- Computer Assisted Medical Intervention Tool Kit - runtime
- libcg3-1 (1.4.6-1 b3 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 1.4.6-1 b2 [hppa, m68k, ppc64, sh4, sparc64, x32], 1.4.6-1 b1 [alpha], 1.4.6-1 [ia64])
- Runtime for CG-3
- libchemicaltagger-java (1.6.2-4)
- tool for semantic text-mining in chemistry
- libclblas-bin (2.6-3) [debports]
- OpenCL BLAS library (executables)
- libclblas-bin
- 本虚包由这些包填实： clblas-client
- libcom3.23.1 (7.0.8.1 dfsg1-6)
- EPICS common library
- libdbcsr-dev (2.6.0-3 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, x32], 2.6.0-2 [alpha], 2.5.0-1 [ia64])
- Distributed Block Compressed Sparse Row matrix library
- libdlpack-dev (1.0-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.6-1 [ia64])
- Open In Memory Tensor Structure
- libdyssol1.0 (1.1.1 ds1-1) [debports]
- Tool for dynamic flowsheet simulation. Shared libraries
- libdyssol1.0t64 (1.1.1 ds1-2.1 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 1.1.1 ds1-2.1 b1 [alpha, ppc64, sparc64], 1.1.1 ds1-2.1 [m68k, sh4])
- Tool for dynamic flowsheet simulation. Shared libraries
- libeccodes-data (2.39.1-1)
- GRIB and BUFR enecoding/encoding software library - data
- libeckit-utils (1.28.3-1 b1 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.26.2-1 [ia64], 1.24.4-1 [alpha], 1.16.3-1 b1 [m68k, sh4], 1.16.3-1 [hppa, x32])
- C toolkit for ECMWF tools and applications - development files
- libfaiss-dev (1.9.0-5 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 1.9.0-5 [x32], 1.8.0-5 [ia64])
- efficient similarity search and clustering of dense vectors
- libfckit-utils (0.13.3-1)
- Library Fortran toolkit for interoperating Fortran with C/C
- libgfsgl0 (20121130 dfsg-8 [ia64], 20121130 dfsg-7 [riscv64]) [debports]
- graphical viewer for Gerris simulation files. Shared library
- libghemical-data (3.0.0-4.4)
- Molecular Modelling Library (data files)
- libgoby-io-java (3.3.1 dfsg2-11)
- IO API for goby
- libgyoto6 (1.2.0-4 b5) [debports]
- Gyoto framework main library an standard plug-in
- libhdf5-jni (1.14.5 repack-1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 1.10.10 repack-5 b1 [m68k, sh4], 1.10.10 repack-5 [alpha], 1.10.10 repack-3.3 [ia64])
- native library used by libhdf5-java
- libideep-dev (0.0~git20240814.41d636c-1)
- Intel's mkldnn/dnnl wrapper for pytorch
- libinchi-bin (1.07.1 dfsg-6 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.03 dfsg-4 [ia64])
- International Chemical Identifier (InChI) algorithm (executable)
- libismrmrd1.3 (1.3.2-2) [debports]
- ISMRM Raw Data format (ISMRMRD) - shared library
- libjgrapht-java (1.5.2-1)
- Java library of graph theory data structures and algorithms
- libjgrapht-java
- 本虚包由这些包填实： libjgrapht0.8-java
- liblammps-dev (20240207 dfsg-2 [amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4], 20240207 dfsg-1.1 b4 [sparc64], 20240207 dfsg-1.1 b3 [hppa], 20240207 dfsg-1.1 b1 [alpha], 20200303 dfsg1-3 b1 [x32])
- Molecular Dynamics Simulator (dev files)
- liblammps0 (20220106.git7586adbb6a ds1-2 b2 [riscv64], 20200303 dfsg1-3 b1 [x32]) [debports]
- Molecular Dynamics Simulator (shared library)
- liblammps0t64 (20240207 dfsg-2 [amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4], 20240207 dfsg-1.1 b4 [sparc64], 20240207 dfsg-1.1 b3 [hppa], 20240207 dfsg-1.1 b1 [alpha])
- Molecular Dynamics Simulator (shared library)
- liblemon-utils (1.3.1 dfsg-6 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 1.3.1 dfsg-6 b1 [hppa, m68k, ppc64, sh4, x32], 1.3.1 dfsg-6 [alpha, ia64])
- Library for Efficient Modeling and Optimization in Networks (utilities)
- liblinear-tools (2.3.0 dfsg-5 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 2.3.0 dfsg-5 b1 [hppa, m68k, ppc64, sh4, sparc64, x32], 2.3.0 dfsg-5 [alpha, ia64])
- Standalone applications for LIBLINEAR
- libmcpl-dev (1.3.2-3.1 b1 [arm64, riscv64], 1.3.2-3.1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Monte Carlo Particle Lists - development files
- libmcpl1 (1.3.2-3.1 b1 [arm64, riscv64], 1.3.2-3.1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Monte Carlo Particle Lists - library
- libmstoolkit-tools (82-7.2)
- libraries for manipulating mass spectrometry data - tools
- libncarg-bin (6.6.2.dfsg.1-9.1 [alpha, amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sparc64], 6.6.2.dfsg.1-7 b1 [hppa, x32], 6.6.2.dfsg.1-7 [ia64])
- NCAR command-language library - development tools
- libncarg-data (6.6.2.dfsg.1-9.1)
- NCAR command-language library - Data
- libngram-tools (1.3.2-3) [debports]
- OpenGRM n-gram Language Modeling toolkit
- libocas-tools (0.97 dfsg-8 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 0.97 dfsg-8 b1 [hppa, m68k, ppc64, sh4, sparc64, x32], 0.97 dfsg-8 [alpha, ia64])
- Standalone applications implementing the OCAS solver
- libonnx-dev (1.16.2-1 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.12.0-2 b3 [alpha], 1.7.0 dfsg-2 [ia64])
- Open Neural Network Exchange (ONNX) (dev)
- libonnx-testdata (1.16.2-1)
- Open Neural Network Exchange (ONNX) (test data)
- libonnx1 (1.12.0-2 b4 [riscv64], 1.12.0-2 b3 [alpha], 1.7.0 dfsg-2 [ia64]) [debports]
- Open Neural Network Exchange (ONNX) (libs)
- libonnx1t64 (1.16.2-1 b1)
- Open Neural Network Exchange (ONNX) (libs)
- libonnxifi (1.12.0-2 b4 [riscv64], 1.12.0-2 b3 [alpha], 1.7.0 dfsg-2 [ia64]) [debports]
- Open Neural Network Exchange (ONNX) (ONNXIFI)
- libopm-simulators-bin (2024.10 ds-3 b2)
- Parallel porous media / reservoir simulators -- applications
- libopm-upscaling-bin (2024.10 ds-1 b1)
- Porous media upscaling tools -- applications
- liboscar4-java (5.2.0 dfsg-2)
- automated annotation of chemistry in scientific articles
- libphitsmcpl1 (1.3.2-3.1 b1 [arm64, riscv64], 1.3.2-3.1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Monte Carlo Particle Lists - PHITS library
- libpluto-jpl-eph-dev (0.0~git20180228-1.1 b1 [arm64, riscv64], 0.0~git20180228-1.1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- development files to interact with JPL ephemeres data
- libpluto-lunar-dev (0.0~git20180825.e34c1d1-1 b1 [amd64, arm64, riscv64], 0.0~git20180825.e34c1d1-1 [alpha, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- development files for astronomical Lunar library
- libpwiz-tools (3.0.18342-4.1 b1 [hppa, m68k, sh4], 3.0.18342-4.1 [alpha, amd64, arm64, armel, armhf, i386, ia64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32])
- ProteoWizard command line tools
- libqgis-customwidgets (3.34.14 dfsg-1 b1 [amd64, arm64, armel, armhf, i386, ppc64, ppc64el, riscv64, s390x], 3.34.13 dfsg-1 [hppa], 3.28.15 dfsg-1 [sh4], 3.28.7 dfsg-1 [alpha], 3.22.13 dfsg-1 b1 [x32], 3.16.16 dfsg-1 [m68k], 2.14.19 dfsg-1 [sparc64])
- QGIS custom widgets for Qt Designer
- libqtpropertybrowser3 (3.4.0-2 b1 [sparc64], 3.4.0-2 [hppa, x32], 3.4.0-1 [alpha], 3.2.2-2 [ppc64]) [debports]
- Qt Property Browser Library - runtime
- libsigmf (1.0.2-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.0.2-2 [ia64])
- SigMF data format handling library
- libsilo-bin (4.11-6.1 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 4.11-6.1 b1 [alpha, m68k, sh4], 4.11-5 b1 [hppa, ia64])
- Utilities to manipulate libsilo files
- libsimgrid3.11 (3.11.1-10) [debports]
- Toolkit for scalable simulation of distributed applications
- libsmiles-scripts-java (0.2.0 svn754 branch system deps-1)
- command line tools to handle SMILES descriptors - Java libraries
- libsmiles-scripts-perl (0.2.0 svn754 branch system deps-1)
- command line tools to handle SMILES descriptors - Perl libraries
- libssm-bin (1.4.0-2 b3 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 1.4.0-2 b2 [hppa, m68k, ppc64, sh4, sparc64, x32], 1.4.0-2 b1 [alpha], 1.4.0-2 [ia64])
- macromolecular superposition library - binaries
- libssu-tools (0.10.0-3) [debports]
- high-performance phylogenetic diversity calculations (binaries)
- libssu-tools
- 本虚包由这些包填实： unifrac-tools
- libsswmcpl1 (1.3.2-3.1 b1 [arm64, riscv64], 1.3.2-3.1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Monte Carlo Particle Lists - SSW library
- libstxxl1 (1.3.1-5) [debports]
- C STL drop-in replacement for extremely large datasets
- libtorch-test (2.5.1 dfsg-1 b1 [amd64, arm64, ppc64el, riscv64, s390x], 1.8.1-2 [hppa])
- Tensors and Dynamic neural networks in Python (Test Binaries)
- libtrexio0 (2.2.3-3 b3 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 2.2.3-3 b2 [hppa, m68k, sh4], 2.2.3-3 b1 [alpha, ia64])
- TREX I/O library for efficient data I/O in quantum chemistry.
- libuhd4.7.0-dpdk-tests (4.7.0.0 ds1-2 b2)
- universal hardware driver for Ettus Research products - DPDK tests
- libvcflib-tools (1.0.9 dfsg1-3 b2 [amd64, arm64, mips64el, ppc64el, riscv64], 1.0.9 dfsg1-3 [alpha], 1.0.3 dfsg-2 [ia64, m68k, ppc64, sh4, sparc64, x32])
- C library for parsing and manipulating VCF files (tools)
- libvdjtools-java (1.2.1 git20190311 repack-2) [non-free]
- Java library of vdjtools
- libwannier90-dev (3.1.0 ds-10 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.1.0 ds-8 [ia64])
- Maximally Localized Wannier Functions - development library
- libxgboost-dev (2.1.3-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.0.3-1 b1 [ia64])
- Scalable and Flexible Gradient Boosting (Development)
- libxgboost-predictor-java (0.3.1 dfsg-2)
- Java implementation of XGBoost predictor for online prediction tasks
- libxgboost0 (2.1.3-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.0.3-1 b1 [ia64])
- Scalable and Flexible Gradient Boosting (Shared lib)
- libxy-bin (1.6-3.1 b4 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 1.6-3.1 b3 [ppc64, sparc64, x32], 1.6-3.1 b1 [hppa], 1.6-3.1 [sh4], 1.6-3 [alpha, m68k], 1.6-2 [ia64])
- xylib - utilities
- libyade (2024.08a-4 b1 [amd64, arm64], 2018.02b-5 [ppc64], 2018.02b-1 [x32], 2018.02a-2 [hppa], 2017.01a-9 [sparc64], 1.00.0-2 [alpha])
- Platform for discrete element modeling. Libraries
- liggghts (3.8.0 repack1-12 [amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 3.8.0 repack1-10 b1 [hppa], 3.8.0 repack1-9.1 [alpha], 3.8.0 repack1-7 [x32])
- Open Source DEM Particle Simulation Software.
- lighter (1.1.3-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.1.2-7 [ia64])
- fast and memory-efficient sequencing error corrector
- litl-tools (0.1.9-13 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 0.1.9-13 b1 [hppa, m68k, ppc64, sh4, sparc64, x32], 0.1.9-13 [alpha, ia64])
- Lightweight Trace Library - tools
- llm (0.19.1-1) [contrib]
- CLI utility and Python library for interacting with Large Language Models
- loki (2.4.7.4-12 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.4.7.4-10 [alpha, ia64])
- MCMC linkage analysis on general pedigrees
- looktxt (1.4.1-3 b1 [arm64, riscv64], 1.4.1-3 [alpha, amd64, armel, armhf, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Convert free format text file into scientific data formats
- looptools (2.16-1 b1 [riscv64], 2.16-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Integral Evaluator of One-loop Feynman Diagram
- lorene (0.0.0~cvs20161116 dfsg-1.3)
- framework for numerical relativity
- lorene-codes-src (0.0.0~cvs20161116 dfsg-1.3)
- source files of LORENE-based codes
- ltrsift (1.0.2-10 b1 [arm64], 1.0.2-10 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, x32])
- postprocessing and classification of LTR retrotransposons
- lttoolbox-dev (3.7.6-1 b2 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.7.6-1 b1 [alpha], 3.7.6-1 [ia64])
- Development tools and library for lttoolbox
- lucy (1.20-5 b1 [arm64], 1.20-5 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.20-4 [ia64])
- DNA sequence quality and vector trimming tool
- lumpy-sv (0.3.1 dfsg-7 b2 [riscv64], 0.3.1 dfsg-7 b1 [alpha, amd64, arm64, armel, armhf, i386, ia64, m68k, mips64el, ppc64el, sh4, x32], 0.3.1 dfsg-1 [hppa, ppc64, sparc64])
- general probabilistic framework for structural variant discovery
- lumpy-sv-examples (0.3.1 dfsg-7)
- general probabilistic framework for structural variant discovery (data)
- lutefisk (1.0.7 dfsg-7 b1 [arm64, riscv64], 1.0.7 dfsg-7 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- de novo interpretation of peptide CID spectra
- lxi-tools (2.8-1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4], 2.7-1 b1 [ia64, sparc64, x32], 2.7-1 [alpha])
- LAN eXtensions for Instrumentation (LXI) software interface
- m2kcli (0.9.0-3)
- ADI tool for interfacing with the ADALM2000
- macs (3.0.2-1 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, ppc64, ppc64el, riscv64, s390x, sh4], 3.0.2-1 [m68k], 2.2.9.1-1 b1 [sparc64], 2.2.9.1-1 [x32], 2.2.6-3 b1 [ia64])
- Model-based Analysis of ChIP-Seq on short reads sequencers
- macsyfinder (2.1.4-1)
- detection of macromolecular systems in protein datasets
- maffilter (1.3.1 dfsg-6 b1 [arm64, x32], 1.3.1 dfsg-6 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64])
- process genome alignment in the Multiple Alignment Format
- maffilter-examples (1.3.1 dfsg-6)
- process genome alignment in the Multiple Alignment Format (example data)
- mafft (7.505-1 b1 [arm64, riscv64], 7.505-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Multiple alignment program for amino acid or nucleotide sequences
- malt (0.5.2-3)
- sequence alignment and analysis tool to process sequencing data
- mandelbrot-solver (3.2.1-10.1 b2 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, x32], 3.2.1-10.1 b1 [alpha, sh4, sparc64], 3.2.1-10.1 [ia64])
- Solver for Mandelbrot polynomials based on MPSolve
- mapdamage (2.2.2 dfsg-1)
- tracking and quantifying damage patterns in ancient DNA sequences
- mapsembler2 (2.2.4 dfsg1-4 b1 [arm64], 2.2.4 dfsg1-4 [amd64, ppc64el, s390x], 2.2.3 dfsg-1 [alpha, hppa, ppc64, x32], 2.1.6 dfsg-1 [m68k, sh4, sparc64])
- bioinformatics targeted assembly software
- maq (0.7.1-10 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.7.1-9 [ia64])
- 将短的、定长的多态性DNA序列读段比对到参考序列上
- maqview (0.2.5-12 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.2.5-11 [ia64])
- graphical read alignment viewer for short gene sequences
- mash (2.3 dfsg-6 b2 [riscv64], 2.3 dfsg-6 b1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, s390x], 2.2.2 dfsg-1 b1 [hppa, m68k, sh4, sparc64, x32])
- fast genome and metagenome distance estimation using MinHash
- massxpert (8.5.0-2 [all], 7.0.0-2 [ppc64, riscv64, sparc64], 6.0.3-1 [alpha, m68k, sh4, x32])
- transitional package for massxpert -> massxpert2
- massxpert-data (7.0.0-2)
- polymer chemistry modelling and mass spectrometry data simulation (data)
- massxpert2 (8.5.0-2)
- polymer chemistry modelling and mass spectrometry data simulation (runtime)
- massxpert2-data (8.5.0-2)
- polymer chemistry modelling and mass spectrometry data simulation (data)
- matlab-brain2mesh (0.7.9-3) [contrib]
- automated brain tetrahedral mesh generation toolbox for MATLAB
- matlab-gdf (0.1.3-11.1) [contrib]
- IO library for the GDF -- Matlab interface
- matlab-iso2mesh (1.9.8 ds-1) [contrib]
- 3D surface and volumetric mesh generator for MATLAB
- matlab-jnifti (0.6-3) [contrib]
- fast NIfTI-1/2 reader and NIfTI-to-JNIfTI converter for MATLAB
- matlab-jsonlab (2.9.8-1) [contrib]
- native JSON/UBJSON/MassagePack encoder/decoder for MATLAB
- matlab-zmat (0.9.9 ds.1-3) [contrib]
- in-memory data compression for MATLAB
- maude (3.4-1 b1 [arm64], 3.4-1 [alpha, amd64, ia64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.2-2 [m68k], 3.1-2 [x32], 2.7-2 b1 [hppa, sh4])
- high-performance logical framework
- mauve-aligner (2.4.0 4736-6)
- multiple genome alignment
- mayavi2 (4.8.2-4 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x], 4.8.1-4 [alpha, hppa, sparc64], 4.8.1-3 [sh4], 4.8.0-2 [m68k], 4.7.1-2 b1 [x32])
- scientific visualization package for 2-D and 3-D data
- mbpoll (1.5.2-1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 1.4.11 dfsg-2 [alpha])
- command line utility to communicate with ModBus slave (RTU or TCP)
- mbt (3.10-3 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.10-3 [alpha], 3.6-3.1 b1 [ia64])
- memory-based tagger-generator and tagger
- mbtserver (0.16-2 b1 [arm64], 0.16-2 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.14-2.1 b2 [ia64])
- Server extensions for the MBT tagger
- mcaller (1.0.3 git20210624.b415090-3)
- find methylation in nanopore reads
- mcpl (1.3.2-3.1 b1 [arm64, riscv64], 1.3.2-3.1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Monte Carlo Particle Lists - libraries and tools
- mcstas (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- Neutron ray-trace simulation
- mcstas-clusterscripts (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- Neutron ray-trace simulation - parallelization scripts
- mcstas-comps (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- Neutron ray-trace simulation - components
- mcstas-manuals (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- Neutron ray-trace simulation - documentation
- mcstas-mccodelib (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- Neutron ray-trace simulation - Python code library
- mcstas-mcdisplay-mantid (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- Neutron ray-trace simulation - Mantid instrument display
- mcstas-mcdisplay-matlab (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- Neutron ray-trace simulation - Matlab/Octave instrument display
- mcstas-mcdisplay-matplotlib (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- Neutron ray-trace simulation - Matplotlib instrument display
- mcstas-mcdisplay-pyqtgraph (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- Neutron ray-trace simulation - pyqtgraph instrument display
- mcstas-mcdisplay-webgl (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- Neutron ray-trace simulation - WebGL instrument display
- mcstas-mcdisplay-webgl-classic (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- Neutron ray-trace simulation - WebGL instrument display
- mcstas-mcdoc (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- Neutron ray-trace simulation - documentation browser
- mcstas-mcgui (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- Neutron ray-trace simulation - GUI
- mcstas-mcplot-html (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64])
- Neutron ray-trace simulation - HTML plotting frontend
- mcstas-mcplot-matlab (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- Neutron ray-trace simulation - Matlab/Octave plotting frontend
- mcstas-mcplot-matplotlib (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- Neutron ray-trace simulation - Matplotlib plotting frontend
- mcstas-mcplot-pyqtgraph (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- Neutron ray-trace simulation - pyqtgraph plotting frontend
- mcstas-mcplot-svg (3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32]) [debports]
- Neutron ray-trace simulation - SVG plotting frontend
- mcstas-mcplot-svg
- 本虚包由这些包填实： mcstas-mcplot-html
- mcstas-mcresplot (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- Neutron ray-trace simulation - resolution function plotter
- mcstas-mcrun (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- Neutron ray-trace simulation - runner
- mcstas-suite-python (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- Neutron ray-trace simulation - full simulation suite
- mcxtrace (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- X-ray ray-trace simulation
- mcxtrace-clusterscripts (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- X-ray ray-trace simulation - parallelization scripts
- mcxtrace-comps (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- X-ray ray-trace simulation - components
- mcxtrace-manuals (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- X-ray ray-trace simulation - documentation
- mcxtrace-mccodelib (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- X-ray ray-trace simulation - Python code library
- mcxtrace-mxdisplay-matlab (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- X-ray ray-trace simulation - Matlab/Octave instrument display
- mcxtrace-mxdisplay-matplotlib (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- X-ray ray-trace simulation - Matplotlib instrument display
- mcxtrace-mxdisplay-pyqtgraph (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- X-ray ray-trace simulation - pyqtgraph instrument display
- mcxtrace-mxdisplay-webgl (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- X-ray ray-trace simulation - WebGL instrument display
- mcxtrace-mxdisplay-webgl-classic (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- X-ray ray-trace simulation - WebGL instrument display
- mcxtrace-mxdoc (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- X-ray ray-trace simulation - documentation browser
- mcxtrace-mxgui (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- X-ray ray-trace simulation - GUI
- mcxtrace-mxplot-html (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64])
- X-ray ray-trace simulation - HTML plotting frontend
- mcxtrace-mxplot-matlab (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- X-ray ray-trace simulation - Matlab/Octave plotting frontend
- mcxtrace-mxplot-matplotlib (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- X-ray ray-trace simulation - Matplotlib plotting frontend
- mcxtrace-mxplot-pyqtgraph (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- X-ray ray-trace simulation - pyqtgraph plotting frontend
- mcxtrace-mxplot-svg (3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32]) [debports]
- X-ray ray-trace simulation - SVG plotting frontend
- mcxtrace-mxplot-svg
- 本虚包由这些包填实： mcxtrace-mxplot-html
- mcxtrace-mxrun (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- X-ray ray-trace simulation - runner
- mcxtrace-suite-python (3.5 3.5.11 ds5-1 b1 [amd64], 3.5 3.5.11 ds5-1 [arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.5 0.0~git20240801183257.cdaa431 ds5-2 [alpha, hppa], 3.5 0.0~git20240719135548.728fd5e ds5-1 [x32])
- X-ray ray-trace simulation - full simulation suite
- mecat2 (0.0 git20200428.f54c542 ds-4)
- ultra-fast and accurate de novo assembly tools for SMRT reads
- meep (1.25.0-4 b1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.25.0-4 [alpha, hppa, m68k, sh4], 1.12.0-3 [x32], 1.7.0-3 [ia64])
- software package for FDTD simulation
- meep-mpi-default (1.25.0-6 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.25.0-6 b1 [alpha, m68k, sh4], 1.25.0-6 [hppa], 1.25.0-2 [ia64, x32])
- software package for FDTD simulation, parallel version
- meep-openmpi (1.25.0-2) [debports]
- software package for FDTD simulation, parallel (OpenMPI) version
- megadepth (1.2.0-4 b2 [arm64, riscv64], 1.2.0-4 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- computes coverage from BigWig and BAM sequencing files
- megahit (1.2.9-5)
- ultra-fast and memory-efficient meta-genome assembler
- megan-ce (6.21.1 dfsg-4)
- interactive tool to explore and analyse microbiome sequencing data
- melting (5.2.0-2)
- compute the melting temperature of nucleic acid duplex
- merkaartor (0.20.0 ds-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.19.0 ds-5 b1 [ia64])
- map editor for OpenStreetMap.org
- meryl (0~20150903 r2013-9 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0~20150903 r2013-8 b3 [ia64])
- in- and out-of-core kmer counting and utilities
- metabat (2.15-4 b1)
- robust statistical framework for reconstructing genomes from metagenomic data
- metaeuk (7-bba0d80 ds-1 b1 [amd64, arm64, mips64el, ppc64el, riscv64], 7-bba0d80 ds-1 [alpha], 6-a5d39d9 ds-5 [ia64])
- sensitive, high-throughput gene discovery and annotation for metagenomics
- metaeuk-examples (7-bba0d80 ds-1)
- optional resources for the metaeuk package
- metaphlan (4.0.4-1)
- Metagenomic Phylogenetic Analysis
- metaphlan2-data (2.6.0 ds-4)
- data package for Metagenomic Phylogenetic Analysis
- metastudent (2.0.1-10)
- predictor of Gene Ontology terms from protein sequence
- metastudent-data (2.0.1-8)
- predictor of Gene Ontology terms from protein sequence - data files
- metastudent-data-2 (1.0.0-6)
- predictor of Gene Ontology terms from protein sequence - data #2
- metview (5.23.1-1 [amd64, arm64, mips64el, ppc64el], 5.7.0-1 [hppa], 5.6.1-3 [m68k], 5.3.0-3 [ppc64, riscv64], 5.3.0-1 [sh4], 5.0.0~beta.1-1 b1 [alpha], 4.9.1-1 [sparc64])
- Interactive data visualization and analysis environment,
- metview-data (5.23.1-1)
- Data needed for the Metview data analysis environment
- mhap (2.1.3 dfsg-3)
- locality-sensitive hashing to detect long-read overlaps
- mia-doctools (2.4.7-13)
- Helper scripts for run-time document creation
- mia-tools (2.4.7-13 b7 [amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 2.4.7-13 b4 [alpha], 2.4.7-13 b1 [m68k, sh4], 2.4.7-1 b2 [x32])
- Command line tools for gray scale image processing
- mialmpick (0.2.15-2 b2 [arm64, riscv64], 0.2.15-2 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Tools for landmark picking in 3D volume data sets
- microbegps (1.0.0-7)
- explorative taxonomic profiling tool for metagenomic data
- microbiomeutil (20101212 dfsg1-6)
- Microbiome Analysis Utilities
- microbiomeutil-data (20101212 dfsg1-6)
- Reference 16S sequences and NAST-alignments used by microbiomeutil tools
- microhope (5.3.3 repack-1 [all], 4.4.3 dfsg-1 [ia64])
- hardware & software framework to learn microcontrollers
- minc-tools (2.3.00 dfsg-10 b2 [arm64, riscv64], 2.3.00 dfsg-10 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- MNI medical image format tools
- mindthegap (2.3.0-4 b1 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, sparc64, x32], 2.3.0-4 [alpha], 2.3.0-3 b1 [ia64], 2.3.0-1 [hppa])
- performs detection and assembly of DNA insertion variants in NGS read datasets
- mindthegap-examples (2.3.0-4)
- optional scripts and example resources for mindthegap
- minexpert2 (9.6.0-1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 8.2.0-1 [alpha, m68k, sh4, x32])
- MS^n mass spectrometric data visualization and mining (runtime)
- minia (3.2.6-4 b3 [arm64], 3.2.6-4 b2 [amd64, mips64el, ppc64, ppc64el, riscv64, sparc64, x32], 3.2.6-4 b1 [alpha, ia64], 3.2.6-2 [hppa], 1.6906-2 [m68k, sh4])
- short-read biological sequence assembler
- miniasm (0.3 dfsg-4 b1 [arm64, riscv64], 0.3 dfsg-4 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- ultrafast de novo assembler for long noisy DNA sequencing reads
- minicondor (23.6.2 dfsg-2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 23.4.0 dfsg-1 [alpha, m68k, sh4, x32])
- distributed workload management system - single node configuration
- minihtcondor (23.6.2 dfsg-2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 23.4.0 dfsg-1 [alpha, m68k, sh4, x32])
- transitional dummy package
- minimac4 (4.1.6-1)
- Fast Imputation Based on State Space Reduction HMM
- minimap (0.2-8 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 0.2-8 b1 [hppa, m68k, ppc64, sh4, sparc64, x32], 0.2-8 [alpha, ia64])
- tool for approximate mapping of long biosequences such as DNA reads
- minimap2 (2.27 dfsg-1 b3 [arm64], 2.27 dfsg-1 b2 [amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 2.27 dfsg-1 b1 [alpha, sh4, x32], 2.24 dfsg-3 b1 [ia64])
- versatile pairwise aligner for genomic and spliced nucleotide sequences
- minisat (1:2.2.1-8 b1 [arm64], 1:2.2.1-8 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Fast and lightweight SAT solver
- minisat (1.0-5 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.0-4 [ia64])
- solver for pseudo-Boolean constraints
- minisat2 (1:2.2.1-5 b1) [debports]
- Transitional package for minisat
- minisat2
- 本虚包由这些包填实： minisat
- mipe (1.1-9)
- Tools to store PCR-derived data
- mira-assembler (4.9.6-11 b1 [arm64, x32], 4.9.6-11 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64])
- Whole Genome Shotgun and EST Sequence Assembler
- mira-rfam-12s-rrna (4.9.6-11)
- extract of RFAM 12 rRNA database
- mirtop (0.4.28-2)
- annotate miRNAs with a standard mirna/isomir naming
- missfits (2.8.0-5 b1 [arm64, riscv64], 2.8.0-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Basic maintenance and packaging tasks on FITS files
- mitools (2.0.5-7 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x], 2.0.5-5 [sh4], 2.0.2-0.3 [sparc64])
- view, convert and perform basic maths with medical image datasets
- mldemos (0.5.1 git.1.ee5d11f-4) [debports]
- Machine Learning Demos (MLDemos) with Visualization
- mlpack-bin (4.5.1-1 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4], 4.4.0-1 b2 [sparc64], 4.4.0-1 [x32], 3.4.2-7 [hppa], 3.2.2-1 [ia64])
- intuitive, fast, scalable C machine learning library (binaries)
- mlv-smile (1.47-8 b1 [riscv64], 1.47-8 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Find statistically significant patterns in sequences
- mmb (4.0.0 dfsg-5)
- model the structure and dynamics of macromolecules
- mmb-common (4.0.0 dfsg-5)
- model the structure and dynamics of macromolecules (common files)
- mmmulti (0.1-3)
- memory backed multimap
- mmseqs2 (15-6f452 ds-2 b3 [riscv64], 15-6f452 ds-2 b2 [amd64, arm64, mips64el, ppc64el], 15-6f452 ds-2 [ia64], 12-113e3 ds-3 b1 [alpha, sh4, x32], 12-113e3 ds-2 b1 [hppa, m68k, ppc64], 11-e1a1c ds-4 [sparc64])
- ultra fast and sensitive protein search and clustering
- mmseqs2-examples (15-6f452 ds-2)
- optional resources for the mmseqs2 package
- mocassin (2.02.73.2-1 b1 [arm64, m68k, riscv64], 2.02.73.2-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- MOnte CArlo SimulationS of Ionised Nebulae
- mocassin-benchmarks (2.02.73.2-1)
- benchmarks for the photoionisation code MOCASSIN
- mocassin-data (2.02.73.2-1)
- atomic and optical data for the photoionisation code MOCASSIN
- mocassin-examples (2.02.73.2-1)
- Examples for the photoionisation code MOCASSIN
- molds (0.3.1-2 b1 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 0.3.1-2 [armhf, i386])
- Semi-empirical electronic structure and molecular dynamics
- molequeue (0.9.0-1 b3 [amd64], 0.9.0-1 b2 [arm64, riscv64], 0.9.0-1 b1 [alpha, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Desktop integration of high performance computing resources
- mona (1.4-18-1 b2 [arm64], 1.4-18-1 b1 [amd64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 1.4-18-1 [alpha, hppa, ia64, m68k, ppc64, sh4, sparc64, x32])
- theorem prover based on automata
- montage (6.1 dfsg-1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 6.0 dfsg-10 b1 [alpha], 6.0 dfsg-9 [ia64])
- Toolkit for assembling FITS images into mosaics
- montage-gridtools (6.1 dfsg-1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 6.0 dfsg-10 b1 [alpha], 6.0 dfsg-9 [ia64])
- Create files to run montage on the grid
- mopac (22.1.1-2 b1 [arm64], 22.1.1-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Molecular Orbital PACkage (MOPAC)
- mopac7-bin (1.15-7 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.15-6 b1 [ia64])
- Semi-empirical Quantum Chemistry Library (binaries)
- mosdepth (0.3.10 ds-1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64], 0.3.3 ds-1 [sparc64])
- BAM/CRAM depth calculation biological sequencing
- mosdepth-examples (0.3.10 ds-1)
- Test data for mosdepth
- mothur (1.48.1-1 b1 [arm64], 1.48.1-1 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.48.0-2 b1 [ia64])
- sequence analysis suite for research on microbiota
- mpb (1.11.1-6 b2 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.11.1-6 b1 [alpha, armel, armhf, i386], 1.11.1-6 [hppa, m68k, sh4], 1.11.1-5 [ia64, x32])
- MIT Photonic-Bands
- mpb-mpi (1.11.1-6 b2 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.11.1-6 b1 [alpha, armel, armhf, i386], 1.11.1-6 [hppa, m68k, sh4], 1.11.1-5 [ia64, x32])
- MIT Photonic-Bands, parallel (mpich) version
- mpb-scm (1.11.1-6)
- MIT Photonic-Bands initialisation files
- mpgrafic (0.3.19-1 b6 [s390x], 0.3.19-1 b5 [amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64el], 0.3.19-1 b4 [alpha, hppa, ppc64, riscv64, sh4, sparc64, x32], 0.3.19-1 b1 [ia64])
- MPI version of N-body initial conditions grafic package
- mpqc (2.3.1-22 b2 [armel, armhf, hppa, i386, m68k, riscv64, sh4, x32], 2.3.1-22 b1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, s390x, sparc64], 2.3.1-21 [ia64])
- Massively Parallel Quantum Chemistry Program
- mpqc-support (2.3.1-22 b2 [armel, armhf, hppa, i386, m68k, riscv64, sh4, x32], 2.3.1-22 b1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, s390x, sparc64], 2.3.1-21 [ia64])
- Massively Parallel Quantum Chemistry Program (support tools)
- mpsolve (3.2.1-10.1 b2 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, x32], 3.2.1-10.1 b1 [alpha, sh4, sparc64], 3.2.1-10.1 [ia64])
- Multiprecision polynomial solver (command line version)
- mptp (0.2.5-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.2.4-3 b1 [ia64], 0.2.3-1 [ppc64])
- single-locus species delimitation
- mrbayes (3.2.7a-7 b2 [arm64], 3.2.7a-7 b1 [amd64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.2.7a-7 [x32], 3.2.6 dfsg-1 b3 [alpha], 3.2.6 dfsg-1 [sh4])
- Bayesian Inference of Phylogeny
- mrbayes-mpi (3.2.7a-7 b2 [arm64], 3.2.7a-7 b1 [amd64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.2.7a-7 [x32], 3.2.6 dfsg-1 b3 [alpha], 3.2.6 dfsg-1 [sh4])
- Bayesian Inference of Phylogeny - mpi version
- mricron (1.2.20211006 dfsg-6 [amd64, arm64, armel, armhf, i386, ppc64el], 0.20140804.1~dfsg.1-4 [ppc64])
- magnetic resonance image conversion, viewing and analysis
- mricron-data (1.2.20211006 dfsg-6)
- data files for MRIcron
- mrpt-apps (1:2.14.7 ds-1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x], 1:2.11.6 ds-1 [m68k], 1:2.10.1 ds-2 [hppa], 1:2.1.4-1 [alpha], 1:1.5.8-1 b1 [x32], 1:1.4.0-7 [sparc64], 1:0.9.5svn2563-1 [sh4])
- Mobile Robot Programming Toolkit - Console and GUI applications
- mrpt-common (1:2.14.7 ds-1)
- Mobile Robot Programming Toolkit - Example datasets and files
- mrpt-libs (1:0.9.5svn2563-1) [debports]
- Mobile Robot Programming Toolkit - All the libraries
- mrtrix3 (3.0.4-1 b2 [arm64], 3.0.4-1 b1 [amd64], 3.0~rc3 git135-g2b8e7d0c2-3 [x32])
- diffusion-weighted MRI white matter tractography
- mseed2sac (2.3 ds1-1 b1 [arm64, riscv64], 2.3 ds1-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Convert MiniSEED time series data to SAC
- mssstest (3.0-7) [non-free]
- Normalisation of disease scores for patients with Multiple Sclerosis
- multiqc (1.21 dfsg-2)
- output integration for RNA sequencing across tools and samples
- mumax3 (3.10-9) [contrib]
- GPU-accelerated micromagnetic simulator
- mummer (3.23 dfsg-8 b1 [arm64, riscv64], 3.23 dfsg-8 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Efficient sequence alignment of full genomes
- munipack (0.6.1-1)
- Astronomical photometry software package
- munipack-cli (0.6.1-1 b8 [armhf], 0.6.1-1 b7 [arm64, armel, mips64el], 0.6.1-1 b6 [amd64, i386, ppc64, ppc64el, s390x, sparc64], 0.6.1-1 b4 [alpha, riscv64], 0.6.1-1 b3 [sh4], 0.6.1-1 [m68k], 0.6.0-1 [x32], 0.5.14-2 [hppa], 0.5.11-2.1 [ia64])
- Command line interface of Munipack
- munipack-core (0.6.1-1 b8 [armhf], 0.6.1-1 b7 [arm64, armel, mips64el], 0.6.1-1 b6 [amd64, i386, ppc64, ppc64el, s390x, sparc64], 0.6.1-1 b4 [alpha, riscv64], 0.6.1-1 b3 [sh4], 0.6.1-1 [m68k], 0.6.0-1 [x32], 0.5.14-2 [hppa], 0.5.11-2.1 [ia64])
- Core routines of Munipack
- munipack-gui (0.6.1-1 b8 [armhf], 0.6.1-1 b7 [arm64, armel, mips64el], 0.6.1-1 b6 [amd64, i386, ppc64, ppc64el, s390x, sparc64], 0.6.1-1 b4 [alpha, riscv64], 0.6.1-1 b3 [sh4], 0.6.1-1 [m68k], 0.6.0-1 [x32], 0.5.14-2 [hppa], 0.5.11-2.1 [ia64])
- Graphical user interface of Munipack
- murasaki (1.68.6-14 b1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.68.6-14 [armel, armhf, hppa, i386, m68k, sh4, x32], 1.68.6-13 b5 [ia64])
- homology detection tool across multiple large genomes
- murasaki-common (1.68.6-14)
- homology detection tool across multiple large genomes (common files)
- murasaki-mpi (1.68.6-14 b1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.68.6-14 [armel, armhf, hppa, i386, m68k, sh4, x32], 1.68.6-13 b5 [ia64])
- homology detection tool across multiple large genomes (MPI-version)
- muscle (1:5.1.0-1 b1 [arm64, riscv64], 1:5.1.0-1 [amd64, armel, armhf, i386, mips64el, ppc64el, s390x])
- Multiple alignment program of protein sequences
- muscle3 (3.8.1551-3 b1 [arm64], 3.8.1551-3 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- multiple alignment program of protein sequences
- music-bin (1.2.1-0.4 b1 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x], 1.2.1-0.4 [alpha], 1.2.1-0.3 b2 [i386, sparc64, x32], 1.2.1-0.3 b1 [armel, armhf, hppa, sh4], 1.2.1-0.2 [m68k], 1.1.16-1.1 b2 [ia64])
- Multi-Simulation Coordinator for MPI -- Utilities
- mustang (3.2.4-1 b1 [arm64, riscv64], 3.2.4-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- multiple structural alignment of proteins
- mustang-testdata (3.2.4-1)
- multiple structural alignment of proteins, test data
- nanolyse (1.2.0-4 b1 [riscv64], 1.2.0-4 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- remove lambda phage reads from a fastq file
- nanook (1.33 dfsg-6)
- pre- and post-alignment analysis of nanopore sequencing data
- nanook-examples (1.33 dfsg-6)
- pre- and post-alignment analysis of nanopore sequencing data (examples)
- nanopolish (0.14.0-1 b3 [arm64, riscv64, x32], 0.14.0-1 b2 [amd64, armel, armhf, i386, mips64el, ppc64el], 0.14.0-1 b1 [alpha, hppa, ia64, m68k, sh4], 0.13.3-2 [ppc64], 0.5.0-1 b1 [sparc64])
- consensus caller for nanopore sequencing data
- nanostat (1.4.0-3)
- statistics on long biological sequences
- nanosv (1.2.4 git20190409.c1ae30c-7)
- structural variant caller for nanopore data
- nast-ier (20101212 dfsg1-6 b1 [arm64], 20101212 dfsg1-6 [alpha, amd64, armel, armhf, hppa, i386, ia64, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 20101212 dfsg1-3 [m68k])
- NAST-based DNA alignment tool
- nastran (0.1.95-2) [non-free]
- NASA Structural Analysis System
- nautic (1.5-6 b5 [arm64, mips64el], 1.5-6 b4 [alpha, amd64, armel, armhf, hppa, i386, ppc64, ppc64el, s390x, sh4, sparc64], 1.5-6 b3 [riscv64], 1.5-6 b2 [x32], 1.5-6 [ia64, m68k])
- computation of observer position in astro-navigation
- ncbi-acc-download (0.2.8-3)
- download genome files from NCBI by accession
- ncbi-blast (2.16.0 ds-6 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.12.0 ds-4 b1 [alpha, ia64])
- next generation suite of BLAST sequence search tools
- ncbi-blast -legacy (2.16.0 ds-6)
- NCBI Blast legacy call script
- ncbi-cn3d (3.0.20170106 dfsg2-5 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.0.20170106 dfsg2-2 [ia64])
- 3-dimensional viewer for biological molecules
- ncbi-entrez-direct (19.2.20230331 dfsg-3 b4 [riscv64], 19.2.20230331 dfsg-3 b3 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, s390x], 7.40.20170928 ds-1 [alpha, ppc64, sparc64], 6.90.20170705 ds-2 [hppa, m68k, sh4, x32])
- NCBI Entrez utilities on the command line
- ncbi-epcr (2.3.12-1-10 b1 [arm64], 2.3.12-1-10 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.3.12-1-9 [ia64])
- Tool to test a DNA sequence for the presence of sequence tagged sites
- ncbi-rrna-data (6.1.20170106 dfsg2-5)
- large rRNA BLAST databases distributed with the NCBI toolkit
- ncbi-seg (0.0.20000620-7 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.0.20000620-6 [ia64])
- tool to mask segments of low compositional complexity in amino acid sequences
- ncbi-tools-bin (6.1.20170106 dfsg2-5 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 6.1.20170106 dfsg2-2 [ia64])
- NCBI libraries for biology applications (text-based utilities)
- ncbi-tools-x11 (6.1.20170106 dfsg2-5 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 6.1.20170106 dfsg2-2 [ia64])
- NCBI libraries for biology applications (X-based utilities)
- ncl-ncarg (6.6.2.dfsg.1-9.1 [alpha, amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sparc64], 6.6.2.dfsg.1-7 b1 [hppa, x32], 6.6.2.dfsg.1-7 [ia64])
- NCAR Command Language and NCAR graphics
- ncl-tools (2.1.21 git20210811.b1213a7-6 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.1.21 git20210811.b1213a7-5 [ia64])
- tools to deal with NEXUS files
- nco (5.3.0-1 [amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 5.2.9-1 [alpha], 5.2.4-1 [ia64], 4.7.8-1 [hppa], 4.6.3-1 [x32])
- Command-line operators to analyze netCDF files
- ncoils (2002-9 b1 [arm64, riscv64], 2002-9 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- coiled coil secondary structure prediction
- ncview (2.1.11 ds-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.1.8 ds-5 b1 [ia64])
- X11 visual browser for NetCDF format files
- neat (2.3.2-2 b3 [amd64, arm64, armel, i386, mips64el, s390x], 2.3.2-2 b2 [alpha, armhf, hppa, ia64, m68k, ppc64, ppc64el, riscv64, sh4, sparc64, x32])
- Nebular Empirical Analysis Tool
- neobio (0.0.20030929-6)
- computes alignments of amino acid and nucleotide sequences
- netcdf-bin (1:4.9.2-7 b1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1:4.9.2-7 [alpha, hppa, m68k, sh4, x32], 1:4.9.2-5 b1 [ia64])
- Programs for reading and writing NetCDF files
- neurodebian (0.42.2)
- neuroscience-oriented distribution - repository configuration
- neurodebian-archive-keyring (0.42.2)
- neuroscience-oriented distribution - GnuPG archive keys
- neurodebian-desktop (0.42.2)
- neuroscience-oriented distribution - desktop integration
- neurodebian-dev (0.42.2)
- neuroscience-oriented distribution - development tools
- neurodebian-freeze (0.42.2)
- nd_freeze tool to freeze APT sources to use snapshots
- neurodebian-popularity-contest (0.42.2)
- neuroscience-oriented distribution - popcon integration
- neuron (8.2.2-7 b1 [amd64, arm64, ppc64, ppc64el, riscv64, s390x], 8.2.2-7 [armel, armhf, i386, x32])
- Simulation environment for computational models of neurons
- neuron-dev (8.2.2-7 b1 [amd64, arm64, ppc64, ppc64el, riscv64, s390x], 8.2.2-7 [armel, armhf, i386, x32])
- Neuron simulation environment - Development files
- nexus-tools (4.4.3-6 b3 [arm64, riscv64], 4.4.3-6 b2 [amd64, armel, armhf, i386, mips64el, ppc64, ppc64el, s390x, sparc64], 4.4.3-6 b1 [alpha, ia64, m68k, sh4, x32])
- NeXus scientific data file format - applications
- ngmlr (0.2.7 git20210816.a2a31fb dfsg-2 b2 [arm64], 0.2.7 git20210816.a2a31fb dfsg-2 b1 [amd64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 0.2.7 git20210816.a2a31fb dfsg-2 [alpha, ia64, m68k, ppc64, sh4, sparc64, x32])
- CoNvex Gap-cost alignMents for Long Reads
- nim-kexpr-dev (0.0.2-3)
- kexpr math expressions for nim
- nim-lapper-dev (0.1.7-5)
- simple, fast interval searches for nim
- njplot (2.4-9 b2 [arm64, riscv64], 2.4-9 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- phylogenetic tree drawing program
- nmodl (0.6-2 b4 [arm64], 0.6-2 b3 [amd64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 0.6-2 b1 [x32])
- Code generation engine for the NEURON modeling language
- norsnet (1.0.17-7)
- tool to identify unstructured loops in proteins
- norsp (1.0.6-7)
- predictor of non-regular secondary structure
- nrn-mod2c (0.9 git220919-2 b1 [arm64, riscv64], 0.9 git220919-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- NMODL to C converter for CoreNEURON
- ntcard (1.2.2 dfsg-9 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.2.2 dfsg-4 [hppa, ia64, m68k, sh4, x32])
- Streaming algorithm to estimate cardinality in genomics datasets
- nthash (2.3.0 dfsg-2 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64], 2.2.0-2 [alpha, hppa, ia64, m68k, sh4, sparc64, x32])
- Methods to evaluate runtime and uniformity tests for hashing methods
- numdiff (5.9.0-1 b1 [amd64, arm64, riscv64], 5.9.0-1 [alpha, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Compare similar files with numeric fields
- nutsqlite (2.0.6-4)
- Dietary nutrition analysis software
- nwchem (7.2.3-6)
- High-performance computational chemistry software (default MPI)
- nwchem-data (7.2.3-6)
- High-performance computational chemistry software (data files)
- nwchem-mpich (7.2.3-6 b1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 7.2.3-6 [armel, armhf, hppa, i386, m68k], 7.2.2-2 [ia64], 7.2.1-3 [x32])
- High-performance computational chemistry software (MPICH build)
- nwchem-openmpi (7.2.3-6 b1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 7.2.2-2 [ia64], 7.2.1-3 [x32])
- High-performance computational chemistry software (OpenMPI build)
- nxtrim (0.4.3 dfsg-4 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.4.3 dfsg-3 [alpha, ia64])
- Optimized trimming of Illumina mate pair reads
- oar-common (2.5.10-2 b1 [arm64], 2.5.10-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- OAR batch scheduler common package
- oar-node (2.5.10-2 b1 [arm64], 2.5.10-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- OAR batch scheduler node package
- oar-server (2.5.10-2 b1 [arm64], 2.5.10-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- OAR batch scheduler server package
- oar-server-mysql (2.5.10-2 b1 [arm64], 2.5.10-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- OAR batch scheduler MySQL server backend package
- oar-server-pgsql (2.5.10-2 b1 [arm64], 2.5.10-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- OAR batch scheduler PostgreSQL server backend package
- oar-user (2.5.10-2 b1 [arm64], 2.5.10-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- OAR batch scheduler user package
- oar-user-mysql (2.5.10-2 b1 [arm64], 2.5.10-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- OAR batch scheduler MySQL user backend package
- oar-user-pgsql (2.5.10-2 b1 [arm64], 2.5.10-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- OAR batch scheduler PostgreSQL user backend package
- oar-web-status (2.5.10-2)
- OAR batch scheduler visualization tool package
- objcryst-fox (2022.1-1 b6 [arm64], 2022.1-1 b5 [amd64, ppc64, ppc64el, s390x], 2022.1-1 b3 [riscv64], 1.9.6.0-2.2 [alpha, hppa, ia64, m68k, sh4, sparc64, x32])
- Free Objects for Xtallography
- occt-draw (7.8.1 dfsg1-3 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 7.6.3 dfsg1-7.1 [ia64])
- Open CASCADE Technology command interpreter and graphical test system
- oce-draw (0.18.3-2 b1) [debports]
- OpenCASCADE Community Edition CAE platform shared library
- octave-bart (0.9.00-3)
- Octave bindings for BART
- octave-biosig (2.6.1-1 b1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 2.6.0-1 [alpha, sh4], 2.5.0-1 b2 [hppa], 2.5.0-1 b1 [m68k], 2.4.0-2 [x32])
- Octave bindings for BioSig library
- octave-brain2mesh (0.7.9-3)
- automated brain tetrahedral mesh generation toolbox for Octave
- octave-gdf (0.1.3-11.1 b1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 0.1.3-11.1 [alpha], 0.1.3-11 b2 [sh4], 0.1.3-11 b1 [hppa, m68k], 0.1.3-11 [x32])
- IO library for the GDF -- Octave interface
- octave-iso2mesh (1.9.8 ds-1)
- 3D surface and volumetric mesh generator for Octave
- octave-jnifti (0.6-3)
- fast NIfTI-1/2 reader and NIfTI-to-JNIfTI converter
- octave-jsonlab (2.9.8-1)
- native JSON/UBJSON/MassagePack encoder/decoder for Octave
- octave-psychtoolbox-3 (3.0.19.14.dfsg1-1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.0.19.5.dfsg1-1 [alpha], 3.0.18.12.dfsg1-1.1 [hppa, m68k, sh4], 3.0.18.9.dfsg1-1 [x32])
- toolbox for vision research -- Octave bindings
- octave-zmat (0.9.9 ds.1-3 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64], 0.9.8 ds-8 [alpha, hppa, m68k, ppc64, sh4, sparc64], 0.9.8 ds-7 [x32])
- in-memory data compression for Octave
- octomap-tools (1.9.7 dfsg-4 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.9.7 dfsg-3.1 b1 [ia64])
- Tools for 3D occupancy grid mapping
- octovis (1.9.7 dfsg-4 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.9.7 dfsg-3.1 b1 [ia64])
- Visualization tool for OctoMap
- odil (0.12.2-5)
- C 11 library for the DICOM standard (application)
- odin (2.0.5-7 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x], 2.0.5-5 [sh4], 2.0.2-0.3 [sparc64])
- develop, simulate and run magnetic resonance sequences
- ogdi-bin (4.1.1 ds-5 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 4.1.1 ds-4 [ia64])
- Open Geographic Datastore Interface Library -- utilities
- ompl-plannerarena (1.6.0 ds1-1)
- Open Motion Planning Library (OMPL) plannerarena
- onnxruntime-tools (1.19.2 dfsg-2 [amd64, arm64, armhf, riscv64], 1.16.3 dfsg-7 [x32])
- cross-platform inference and training ML accelerator (tools)
- ont-fast5-api (4.1.1 dfsg-4 b1 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64el, riscv64, sh4], 4.1.1 dfsg-4 [x32], 4.1.1 dfsg-2 [ia64], 4.0.2 dfsg-1 b1 [hppa])
- simple interface to HDF5 files of the Oxford Nanopore .fast5 file format
- open3d-gui (0.18.0 ds-6 [all], 0.17.0 ds-6 [riscv64], 0.15.1 ds-6 [x32])
- Transitional dummy package for open3d-viewer
- open3d-tools (0.18.0 ds-6 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64], 0.15.1 ds-6 [x32])
- Library for 3D data processing - tools
- open3d-viewer (0.18.0 ds-6)
- Library for 3D data processing - viewer GUI
- open3d-viewer-data (0.18.0 ds-6)
- Library for 3D data processing - viewer GUI resources
- openbabel (3.1.1 dfsg-11 b1 [amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.1.1 dfsg-11 [alpha, sh4], 3.1.1 dfsg-9 b1 [m68k, x32], 3.1.1 dfsg-9 [ia64])
- Chemical toolbox utilities (cli)
- openbabel-gui (3.1.1 dfsg-11 b1 [amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.1.1 dfsg-11 [alpha, sh4], 3.1.1 dfsg-9 b1 [m68k, x32], 3.1.1 dfsg-9 [ia64])
- Chemical toolbox utilities (graphical user interface)
- opendrop (3.3.2-2 b2 [amd64, ppc64el, s390x], 3.3.2-2 b1 [arm64, armel, armhf, i386, mips64el, ppc64, riscv64], 3.3.2-2 [alpha, m68k, sparc64], 3.3.1-5 [hppa])
- fully-featured pendant drop tensiometry software
- openfoam (1912.200626-3 b1 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1912.200626-2 b3 [hppa, x32], 1912.200626-1 b1 [alpha], 1912.200626-1 [m68k])
- Open source toolbox for Computational Fluid Dynamics (CFD) - binaries
- openfoam-examples (1912.200626-3)
- Open source toolbox for Computational Fluid Dynamics (CFD) - examples
- openmolcas (23.10-1 b3 [arm64, riscv64], 23.10-1 b2 [amd64, mips64el, ppc64, ppc64el, s390x], 22.02-6 [sparc64])
- Quantum chemistry software package
- openmolcas-data (23.10-1)
- Quantum chemistry software package (data files)
- openmotor (0.5.0-3)
- internal ballistics simulator for rocket motor experimenters
- openms (2.6.0 cleaned1-4)
- package for LC/MS data management and analysis
- openms-common (2.6.0 cleaned1-4)
- package for LC/MS data management and analysis - shared data
- openmx (3.8.5 dfsg1-1) [debports]
- package for nano-scale material simulations
- openstructure (2.9.0-2 [amd64, i386, m68k, mips64el, sh4], 2.5.0-3 [alpha], 2.1.0-1 [x32])
- Open-Source Computational Structural Biology Framework
- opentelemetry-proto (1.3.2-2)
- OpenTelemetry protocol specification and proto files
- openturns-common (1.23-5)
- generic tool to treat and quantify uncertainties (common files)
- openturns-examples (1.14-1) [debports]
- examples of OpenTURNS functionalities
- openuniverse (1.0beta3.1 dfsg-7.1 b2 [arm64, riscv64], 1.0beta3.1 dfsg-7.1 b1 [amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64el, s390x, sh4], 1.0beta3.1 dfsg-7.1 [alpha, ia64, ppc64, sparc64, x32])
- 3D Universe Simulator
- openuniverse-common (1.0beta3.1 dfsg-7.1)
- 3D Universe Simulator data files
- optgeo (2.25-4)
- simulator for geometrical optics
- opticalraytracer (9.6-4)
- Virtual lens/mirror design workshop
- optimir (1.2-2)
- Integrating genetic variations in miRNA alignment
- orthanc (1.12.5 dfsg-1 [amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.12.4 dfsg-4 b2 [x32], 1.12.4 dfsg-4 b1 [alpha], 1.12.3 dfsg-2 [ia64, sh4], 1.5.2 dfsg-1 [hppa])
- Lightweight, RESTful DICOM server for medical imaging
- orthanc-dicomweb (1.18 dfsg-1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x], 1.7 dfsg-5 [sparc64, x32], 0.5 dfsg-3 [alpha])
- Plugin to extend Orthanc with support of WADO and DICOMweb
- orthanc-gdcm (1.8 dfsg-1 b1)
- DICOM transcoder/decoder for Orthanc using GDCM (notably for JPEG2k)
- orthanc-imagej (1.2 dfsg-4)
- ImageJ plugin to import images from Orthanc
- orthanc-mysql (5.0 dfsg-1 b6 [x32], 5.0 dfsg-1 b5 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 5.0 dfsg-1 b2 [ia64, sh4], 2.0-3 b2 [hppa])
- Plugins to use MySQL or MariaDB as a database back-end to Orthanc
- orthanc-neuro (1.1 dfsg-1 b4 [x32], 1.1 dfsg-1 b3 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.1 dfsg-1 [ia64, sh4])
- Neuroimaging plugin for Orthanc
- orthanc-postgresql (5.0 dfsg-3 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 5.0 dfsg-2 b2 [ia64, sh4], 3.2-3 b2 [hppa])
- Plugins to use PostgreSQL as a database back-end to Orthanc
- orthanc-python (4.3 ds-1 b2 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 4.1 ds-3 [ia64, sh4], 1.0 ds-2 b1 [hppa])
- Develop plugins for Orthanc using the Python programming language
- orthanc-webviewer (2.9 dfsg-1 b3 [x32], 2.9 dfsg-1 b2 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 2.9 dfsg-1 [ia64, sh4], 1.2-1 [hppa])
- Web viewer of medical images for Orthanc
- orthanc-wsi (3.0 dfsg-1 [amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 2.1 dfsg-1 [alpha], 2.0 dfsg-2 b2 [ia64, sh4], 0.5-2 b2 [hppa])
- Whole-slide imaging support for Orthanc (digital pathology)
- oscar (1.5.3-2 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 1.5.3-1 [alpha, x32], 1.4.0-1 [ia64])
- Open Source CPAP Analysis Reporter (OSCAR)
- osra (2.1.3-3 b3 [riscv64, sh4, sparc64], 2.1.3-3 b2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x], 2.1.3-3 b1 [ia64, x32])
- optical structure recognition
- otf-trace (1.12.5 dfsg-8 b5 [amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64el, riscv64, s390x, sh4], 1.12.5 dfsg-8 b4 [alpha, hppa, ppc64, sparc64, x32], 1.12.5 dfsg-8 b1 [ia64])
- Open Trace Format support library - development files
- otf2-tools (3.0.3-3.1 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.0.3-3.1 [alpha, ia64])
- Open Trace Format support library - tools
- packmol (1:20.14.3-1 b1 [arm64], 1:20.14.3-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Initial configurations for Molecular Dynamics Simulations
- paje.app (1.98-1.2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.98-1.1 b1 [ia64])
- generic visualization tool (Gantt chart and more)
- pal2nal (14.1-3)
- converts proteins to genomic DNA alignment
- paleomix (1.3.8-2 [amd64, arm64], 1.3.7-3 [m68k, riscv64, sh4])
- pipelines and tools for the processing of ancient and modern HTS data
- paml (4.9j dfsg-5 b1 [arm64], 4.9j dfsg-5 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 4.9j dfsg-4 [ia64])
- Phylogenetic Analysis by Maximum Likelihood (PAML)
- pan-config (0.4)
- PAN Blend config package
- pan-tasks (0.4)
- PAN Blends tasks for tasksel
- paraclu (10-1 b1 [arm64, riscv64], 10-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Parametric clustering of genomic and transcriptomic features
- parafly (0.1.0-5 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.1.0-4 [ia64])
- parallel command processing using OpenMP
- parallel-fastq-dump (0.6.7-3)
- parallel fastq-dump wrapper
- paraview (5.13.1 dfsg-10 [amd64, arm64, i386, riscv64, s390x], 5.12.1 dfsg-4 b2 [ppc64, ppc64el], 5.11.0 dfsg-2 [sparc64], 5.9.0-2 b1 [alpha], 5.7.0-5 b1 [x32], 5.7.0-4 [hppa], 5.4.1 dfsg4-3.1 b1 [m68k], 3.14.1-1 [sh4])
- Parallel Visualization Application
- parsinsert (1.04-15 b1 [riscv64], 1.04-15 [alpha, amd64, arm64, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Parsimonious Insertion of unclassified sequences into phylogenetic trees
- parsinsert-testdata (1.04-15)
- Test data for parsinsert
- parsnp (2.0.6 dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.0.5 dfsg-1 [ia64])
- rapid core genome multi-alignment
- patman (1.2.2 dfsg-8 b2 [arm64], 1.2.2 dfsg-8 b1 [amd64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 1.2.2 dfsg-8 [alpha, hppa, ia64, m68k, ppc64, sh4, sparc64, x32])
- rapid alignment of short sequences to large databases
- pbbamtools (2.4.0 dfsg-1 b4 [alpha, amd64, arm64, mips64el, ppc64el, riscv64], 2.4.0 dfsg-1 b3 [ia64], 1.3.0 dfsg-2 [m68k, sh4])
- processing Pacific Biosciences binary alignment/map files
- pbdagcon (0.3 git20180411.c14c422 dfsg-9 [alpha, amd64, arm64, mips64el, ppc64el, riscv64], 0.3 git20180411.c14c422 dfsg-8 [ia64], 0.3 git20161121.0000000 ds-1.1 b1 [m68k, sh4], 0~20160325 ds-1 [x32])
- sequence consensus using directed acyclic graphs
- pbhoney (15.8.24 dfsg-8)
- genomic structural variation discovery
- pbjelly (15.8.24 dfsg-8)
- genome assembly upgrading tool
- pbsim (1.0.3 git20180330.e014b1d dfsg-3 b1 [arm64, riscv64], 1.0.3 git20180330.e014b1d dfsg-3 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32], 1.0.3 git20180330.e014b1d dfsg-2 [ia64])
- simulator for PacBio sequencing reads
- pdb-tools (2.5.1-2)
- tools for manipulating and editing PDB files
- pdb2pqr (3.6.1 dfsg-1)
- Preparation of protein structures for electrostatics calculations
- perlprimer (1.2.4-2)
- Graphical design of primers for PCR
- perm (0.4.0-8 b2 [arm64], 0.4.0-8 b1 [amd64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 0.4.0-8 [alpha, hppa, ia64, m68k, ppc64, sh4, sparc64, x32])
- efficient mapping of short reads with periodic spaced seeds
- persalys (16.1 ds-1 b1 [arm64], 16.1 ds-1 [alpha, amd64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 13.1.1 ds-1 b1 [hppa])
- GUI for uncertainty treatment and variabilities management
- pftools (3.2.12-1)
- build and search protein and DNA generalized profiles
- phast (1.7 dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.6 dfsg-5 [ia64])
- phylogenetic analysis with space/time models
- phipack (0.0.20160614-5 b1 [arm64, riscv64], 0.0.20160614-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- PHI test and other tests of recombination
- phybin (0.3-6 b1 [riscv64], 0.3-6 [amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sparc64], 0.3-5 b1 [x32])
- binning/clustering newick trees by topology
- phylip (1:3.697 dfsg-4 b1 [arm64], 1:3.697 dfsg-4 [alpha, amd64, armel, armhf, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- package of programs for inferring phylogenies
- phylonium (1.7-3 b1 [arm64], 1.7-3 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Fast and Accurate Estimation of Evolutionary Distances
- phyml (3:3.3.20220408-4 b1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3:3.3.20220408-4 [armel, armhf, hppa, i386, m68k, sh4, x32], 3:3.3.20220408-3 b1 [ia64])
- Phylogenetic estimation using Maximum Likelihood
- physamp (1.1.0-5 b1 [arm64], 1.1.0-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- sample sequence alignment corresponding to phylogeny
- phyutility (2.7.3 dfsg-4 b1 [riscv64], 2.7.3 dfsg-4 [alpha, amd64, arm64, armel, armhf, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32], 2.7.3-1 [hppa])
- simple analyses or modifications on both phylogenetic trees and data matrices
- phyx (1.3.2 ds-1 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.3.1 ds-2 b2 [hppa])
- UNIX-style phylogenetic analyses on trees and sequences
- picard-tools (3.1.1 dfsg-1)
- Command line tools to manipulate SAM and BAM files
- picopore (1.2.0-3)
- lossless compression of Nanopore files
- picosat (965-2 b1 [arm64, riscv64], 965-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- SAT solver with proof and core support
- pigx-rnaseq (0.1.1-1)
- pipeline for checkpointed and distributed RNA-seq analyses
- piler (0~20140707-4 b1 [arm64], 0~20140707-4 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- genomic repeat analysis
- pilercr (1.06 dfsg-5 b1 [arm64, riscv64], 1.06 dfsg-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- software for finding CRISPR repeats
- pilon (1.24-3)
- automated genome assembly improvement and variant detection tool
- pinfish (0.1.0 ds-4 b3 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 0.1.0 ds-4 b1 [alpha])
- Collection of tools to annotate genomes using long read transcriptomics data
- pinfish-examples (0.1.0 ds-4)
- Examples and test data for pinfish
- pique (1.0-7)
- software pipeline for performing genome wide association studies
- pirs (2.0.2 dfsg-12 b1 [arm64, riscv64], 2.0.2 dfsg-12 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64], 2.0.2 dfsg-6 [x32])
- Profile based Illumina pair-end Reads Simulator
- pirs-examples (2.0.2 dfsg-12)
- profile basd Illumina pair-end Reads Simulator (example data)
- pirs-profiles (2.0.2 dfsg-12)
- profile basd Illumina pair-end Reads Simulator (profile data)
- pizzly (0.37.3 ds-9 b1 [arm64, riscv64], 0.37.3 ds-9 [alpha, amd64, hppa, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Identifies gene fusions in RNA sequencing data
- pkg-r-autopkgtest (20241218)
- Script for the automatic testing of R packages
- pktools (2.6.7.6 ds-6 b3 [sparc64], 2.6.7.6 ds-6 b2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, x32], 2.6.7.6 ds-6 [ia64])
- GDAL add-on tools to perform useful raster processing
- placnet (1.04-1)
- Plasmid Constellation Network project
- planetary-system-stacker (0.8.32~git20230901.01f3625-2)
- create a sharp image of a planetary system object (moon, sun, planets)
- planets (0.1.13-23 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.1.13-22 [ia64])
- Gravitation simulation of planetary bodies
- plasmidid (1.6.5 dfsg-2)
- mapping-based, assembly-assisted plasmid identification tool
- plasmidseeker (1.3 dfsg-3 b1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 1.3 dfsg-3 [alpha, hppa, ia64, m68k, ppc64, sh4, sparc64, x32])
- identification of known plasmids from whole-genome sequencing reads
- plast (2.3.2 dfsg-10 b5 [amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32], 2.3.2 dfsg-10 b4 [alpha], 2.3.2 dfsg-10 b3 [ia64, riscv64])
- Parallel Local Sequence Alignment Search Tool
- plast-example (2.3.2 dfsg-10)
- Parallel Local Sequence Alignment Search Tool (example data)
- plastimatch (1.9.4 dfsg.1-3 [amd64], 1.6.2 dfsg-1 [hppa, sparc64, x32], 1.6.0 dfsg-1 [alpha], 1.5.15 dfsg-1 [ppc64])
- medical image reconstruction and registration
- plink (1.07 dfsg-4 b2 [arm64], 1.07 dfsg-4 b1 [amd64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 1.07 dfsg-4 [alpha, hppa, ia64, m68k, ppc64, sh4, sparc64, x32])
- whole-genome association analysis toolset
- plink1.9 (1.90~b7.2-231211-1 [amd64, armel, armhf, i386, x32], 1.90~b3b-150117-1 b1 [hppa], 1.90~b3b-150117-1 [sh4])
- whole-genome association analysis toolset
- plink2 (2.00~a5.8-231123 dfsg-1 b3 [riscv64], 2.00~a5.8-231123 dfsg-1 b2 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sparc64, x32], 2.00~a5.8-231123 dfsg-1 b1 [alpha], 2.00~a5.8-231123 dfsg-1 [ia64])
- whole-genome association analysis toolset
- pluto-jpl-eph (0.0~git20180228-1.1 b1 [arm64, riscv64], 0.0~git20180228-1.1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- command line handling of JPL ephemeres data
- pluto-lunar (0.0~git20180825.e34c1d1-1 b1 [amd64, arm64, riscv64], 0.0~git20180825.e34c1d1-1 [alpha, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- routines for predictions of positions in solar system
- pnetcdf-bin (1.14.0-2 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.12.3-2 b1 [ia64], 1.9.0-1 [m68k, sh4], 1.8.1-3 [hppa, x32])
- Programs for reading and writing parallel NetCDF files
- poa (2.0 20060928-9 b1 [arm64], 2.0 20060928-9 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Partial Order Alignment for multiple sequence alignment
- populations (1.2.33 svn0120106 dfsg-7 b1 [arm64], 1.2.33 svn0120106 dfsg-7 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- population genetic software
- porechop (0.2.4 dfsg-6 b1 [arm64], 0.2.4 dfsg-6 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.2.4 dfsg-5 [ia64])
- adapter trimmer for Oxford Nanopore reads
- poretools (0.6.0 dfsg-7)
- toolkit for nanopore nucleotide sequencing data
- poretools-data (0.6.0 dfsg-7)
- toolkit for nanopore nucleotide sequencing data -- sample datasets
- pplacer (1.1~alpha19-8 b1)
- phylogenetic placement and downstream analysis
- praat (6.4.25 dfsg-1 [amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 6.4.21 dfsg-1 [hppa], 6.4.12 dfsg-3 [alpha], 6.1.34-1 [sh4, x32], 6.1.14-3 [ia64])
- program for speech analysis and synthesis
- prank (0.0.170427 dfsg-3 b1 [arm64, riscv64], 0.0.170427 dfsg-3 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
- predictnls (1.0.20-8)
- prediction and analysis of protein nuclear localization signals
- prime-phylo (1.0.11-13 b1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.0.11-12 [x32], 1.0.11-11 [hppa, ia64, m68k, sh4])
- bayesian estimation of gene trees taking the species tree into account
- primer3 (2.6.1-5 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.6.1-4 [ia64])
- tool to design flanking oligo nucleotides for DNA amplification
- primer3-examples (2.6.1-5)
- tool to design flanking oligo nucleotides for DNA amplification (examples)
- prinseq-lite (0.20.4-6)
- PReprocessing and INformation of SEQuence data (lite version)
- prinseq-lite-examples (0.20.4-6)
- PReprocessing and INformation of SEQuence data (example data)
- proalign (0.603-6 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.603-5 [ia64], 0.603-3 [hppa])
- Probabilistic multiple alignment program
- probabel (0.5.0 dfsg-6 [amd64, i386, m68k, sh4, x32], 0.5.0 dfsg-5 [hppa, ppc64, sparc64], 0.5.0 dfsg-4 [alpha, ia64])
- Toolset for Genome-Wide Association Analysis
- probabel-examples (0.5.0 dfsg-6)
- Example files for ProbABEL
- probalign (1.4-10 b1 [arm64, riscv64], 1.4-10 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- multiple sequence alignment using partition function posterior probabilities
- probcons (1.12-14 b1 [arm64, riscv64], 1.12-14 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- PROBabilistic CONSistency-based multiple sequence alignment
- (1.12-14 b1 [arm64, riscv64], 1.12-14 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Extra programs from the probcons package
- proda (1.0-14 b1 [arm64], 1.0-14 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- 产生蛋白质序列的多种排序
- prodigal (1:2.6.3-6 b1 [arm64, riscv64], 1:2.6.3-6 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Microbial (bacterial and archaeal) gene finding program
- profbval (1.0.22-8)
- predictor of flexible/rigid protein residues from sequence
- profisis (1.0.11-7)
- prediction of protein-protein interaction sites from sequence
- profnet-bval (1.0.22-8 b1 [arm64, riscv64], 1.0.22-8 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- neural network architecture for profbval
- profnet-chop (1.0.22-8 b1 [arm64, riscv64], 1.0.22-8 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- neural network architecture for profchop
- profnet-con (1.0.22-8 b1 [arm64, riscv64], 1.0.22-8 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- neural network architecture for profcon
- profnet-isis (1.0.22-8 b1 [arm64, riscv64], 1.0.22-8 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- neural network architecture for profisis
- profnet-md (1.0.22-8 b1 [arm64, riscv64], 1.0.22-8 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- neural network architecture for metadisorder
- profnet-norsnet (1.0.22-8 b1 [arm64, riscv64], 1.0.22-8 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- neural network architecture for norsnet
- profnet-prof (1.0.22-8 b1 [arm64, riscv64], 1.0.22-8 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- neural network architecture for profacc
- profnet-snapfun (1.0.22-8 b1 [arm64, riscv64], 1.0.22-8 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- neural network architecture for snapfun
- profphd-net (1.0.22-8 b1 [arm64, riscv64], 1.0.22-8 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- neural network architecture for profphd
- profphd-utils (1.0.10-7 b1 [arm64, riscv64], 1.0.10-7 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- profphd helper utilities convert_seq and filter_hssp
- proftmb (1.1.12-11 b2 [riscv64], 1.1.12-11 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32], 1.1.12-11 [ia64])
- per-residue prediction of bacterial transmembrane beta barrels
- progressivemauve (1.2.0 4713 dfsg-5 b4 [arm64], 1.2.0 4713 dfsg-5 b3 [amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64el, riscv64, s390x, sh4, x32], 1.2.0 4713 dfsg-5 b2 [alpha, ia64, ppc64, sparc64])
- multiple genome alignment algorithms
- proj-bin (9.5.1-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 9.4.0-1 b2 [ia64])
- Cartographic projection library (tools)
- prokka (1.14.6 dfsg-6)
- rapid annotation of prokaryotic genomes
- promod3 (3.4.1 ds-1)
- protein homology modelling engine
- promod3-data (3.4.1 ds-1)
- protein homology modelling engine - data files
- proteinortho (6.3.1 dfsg-1 b1 [arm64], 6.3.1 dfsg-1 [amd64, ia64, ppc64, ppc64el, riscv64, s390x, x32], 6.0.31 dfsg-2 [hppa, m68k, sh4], 6.0.31 dfsg-1 [alpha], 6.0.8 dfsg-1 [sparc64])
- Detection of (Co-)orthologs in large-scale protein analysis
- prottest (3.4.2 dfsg-8)
- selection of best-fit models of protein evolution
- provean (1.1.5 ds-2 b1 [arm64, riscv64], 1.1.5 ds-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Protein Variation Effect Analyzer
- pscan-chip (1.1-3 b3 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, s390x], 1.1-3 b2 [alpha, hppa, m68k, ppc64, riscv64, sh4, sparc64, x32], 1.1-3 b1 [ia64])
- ChIP-based identifcation of TF binding sites
- pscan-chip-data (1.1-3)
- auxiliary data for PScan-ChIP
- pscan-tfbs (1.2.2-4 b3 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, s390x], 1.2.2-4 b2 [alpha, hppa, m68k, ppc64, riscv64, sh4, sparc64, x32], 1.2.2-4 b1 [ia64])
- search for transcription factor binding sites
- psfex (3.24.2-2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.24.2-1 [alpha, m68k], 3.17.1 dfsg-5 b1 [hppa])
- Point Spread Function model extractor
- psi3 (3.4.0-6 b5 [mips64el], 3.4.0-6 b4 [ppc64, sparc64], 3.4.0-6 b3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, ppc64el, s390x, sh4], 3.4.0-6 b1 [ia64, riscv64])
- Quantum Chemical Program Suite
- psi4 (1:1.3.2 dfsg-5 b3 [arm64, riscv64], 1:1.3.2 dfsg-5 b2 [amd64, armel, armhf, i386, mips64el, ppc64el, s390x, sparc64], 1:1.3.2 dfsg-5 b1 [alpha, hppa, m68k, ppc64, sh4, x32], 1:1.3.2 dfsg-5 [ia64])
- Quantum Chemical Program Suite
- psi4-data (1:1.3.2 dfsg-5)
- Quantum Chemical Program Suite (data files)
- psortb (3.0.6 dfsg-4 b1)
- bacterial localization prediction tool
- psychopy (2023.2.4 dfsg-3)
- environment for creating psychology stimuli in Python
- psychtoolbox-3-common (3.0.19.14.dfsg1-1)
- toolbox for vision research -- arch/interpreter independent part
- psychtoolbox-3-lib (3.0.19.14.dfsg1-1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.0.19.5.dfsg1-1 [alpha], 3.0.18.12.dfsg1-1.1 [hppa, m68k, sh4], 3.0.18.9.dfsg1-1 [x32])
- toolbox for vision research -- arch-specific parts
- pullseq (1.0.2-5 b1 [arm64], 1.0.2-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Extract sequence from a fasta or fastq
- purify (4.1.0-1 b1 [amd64, arm64, ppc64el, riscv64, s390x], 2.0.0-6 b1 [alpha, ia64, m68k, ppc64, sh4, sparc64, x32])
- Collection of routines for radio interferometric imaging
- pycoqc (2.5.2 dfsg-3)
- computes metrics and generates Interactive QC plots
- pyensembl (2.3.13-1)
- installs data from the Ensembl genome database
- pyfai (2024.05-3)
- Fast Azimuthal Integration scripts
- pyfastx (2.1.0-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.1.0-1 [ia64])
- fast random access to sequences from FASTA/Q file - command
- pymca (5.9.3 dfsg-1)
- Applications and toolkit for X-ray fluorescence analysis -- scripts
- pymca-data (5.9.3 dfsg-1)
- Architecture independent data files for PyMca
- pymoctool (0.5.2-2)
- Python Multi-Order Coverage maps tool for Virtual Observatory
- pymol (3.0.0 dfsg-1)
- Molecular Graphics System
- pymol-data (3.0.0 dfsg-1)
- data files for PyMOL
- pynx (2024.1.1-1)
- Python tools for Nano-structures Crystallography (Scripts)
- pyomop (4.3.0-1)
- OHSDI OMOP Common Data Model tools
- pysatellites (2.7-4)
- simulates the launching of satellites
- python-drizzle-testdata (2.0.0-1)
- Dithered image combination for Python (Test data)
- python-escript-doc (5.6-10)
- Documentation for Escript/Finley
- python-pairix-examples (0.3.8-1)
- 1D/2D indexing and querying with a pair of genomic coordinates (examples)
- python3-adios4dolfinx (0.9.0-2)
- ADIOS2Wrappers for DOLFINx (Python 3)
- python3-airr (1.5.0-1)
- Data Representation Standard library for antibody and TCR sequences
- python3-alignlib (0.1.1 dfsg-2 b8 [arm64], 0.1.1 dfsg-2 b7 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32], 0.1.1 dfsg-2 b5 [ia64], 0.1.1 dfsg-2 b4 [riscv64])
- edit and Hamming distances for biological sequences
- python3-amp (0.6.1-1 b9 [alpha, amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, s390x], 0.6.1-1 b8 [m68k, riscv64], 0.6.1-1 b5 [sparc64], 0.6.1-1 b2 [x32], 0.6.1-1 b1 [sh4])
- Atomistic Machine-learning Package (python 3)
- python3-bioframe (0.4.1-1)
- library to enable flexible, scalable operations on genomic interval dataframes
- python3-bornagain (22~git20241125114253.51de53a ds3-1 [amd64, armel, armhf, mips64el, sparc64], 22~git20240726093306.cb41cc4 ds3-2 [arm64, i386, ppc64, ppc64el, riscv64, s390x], 1.19.0-4 [hppa], 1.19.0-3 b5 [alpha, m68k])
- Simulate and fit X-ray and neutron GISAS -- Python3
- python3-cif2cell (2.1.0 dfsg-1)
- prepare CIF files for electronic structure calculations
- python3-cykhash (2.0.0-3 b3 [arm64], 2.0.0-3 b2 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 2.0.0-3 [ia64, x32])
- cython wrapper for khash-sets/maps, efficient implementation of isin and unique
- python3-cyvcf2 (0.31.1-2 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 0.31.1-2 [x32], 0.30.28-1 b1 [ia64])
- VCF parser based on htslib (Python 3)
- python3-datacache (1.4.1-2)
- helpers for transparently downloading datasets
- python3-datalad-next (1.5.0-1)
- DataLad extension for new features and improved user experience
- python3-dcmstack (0.9-3)
- DICOM to NIfTI conversion - python3 package
- python3-deeptools (3.5.5 dfsg-1)
- platform for exploring biological deep-sequencing data
- python3-deeptoolsintervals (0.1.9-3 b11 [arm64], 0.1.9-3 b10 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32], 0.1.9-3 b8 [ia64], 0.1.9-3 b6 [riscv64])
- handlig GTF-like sequence-associated interal-annotation
- python3-dials (3.22.1 dfsg3-1 [amd64], 3.12.1 dfsg3-4 b1 [riscv64])
- Diffraction Integration for Advanced Light Sources - Python3
- python3-dnapilib (1.1-3)
- adapter prediction for small RNA sequencing - library
- python3-emperor (1.0.3 ds-9.1)
- visualizing high-throughput microbial community data
- python3-escript (5.6-10 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4], 5.5-5 [x32], 5.4-1 [ia64], 5.2-1 [sparc64], 5.1-6 [hppa])
- Escript/Finley finite elements Python3 system (OpenMP MPI)
- python3-escript-mpi (5.6-10 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4], 5.5-5 [x32], 5.4-1 [ia64], 5.2-1 [sparc64], 5.1-6 [hppa])
- (OpenMP MPI)
- python3-faiss (1.9.0-5 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 1.9.0-5 [x32], 1.8.0-5 [ia64])
- Python 3 module for efficient similarity search and clustering of dense vectors
- python3-ffcv (1.0.0 git20240202 ds-2 b1 [arm64], 1.0.0 git20240202 ds-2 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x])
- Fast Forward Computer Vision (and other ML workloads)
- python3-freesas (2024.9.0-1)
- Python libraries for small angle scattering tools
- python3-geneimpacts (0.3.7-5)
- wraps command line tools to assess variants in gene sequences
- python3-gfapy (1.2.3 dfsg-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.2.3 dfsg-2 [ia64])
- flexible and extensible software library for handling sequence graphs
- python3-gffutils (0.13-1)
- Work with GFF and GTF files in a flexible database framework
- python3-gtfparse (1.3.0 ds-1)
- parser for gene transfer format (aka GFF2)
- python3-harmonypy (0.0.9-3)
- is a data integration algorithm
- python3-jupyter-sphinx (0.3.2-2)
- Jupyter Sphinx Extension - Python3
- python3-louvain (0.16-1)
- community graph analysis implementing Louvain method
- python3-mmtf (1.1.3-1)
- binary encoding of biological structures (Python 3)
- python3-mpiplus (0.0.2 ds-1)
- Python GPU framework for alchemical free energy calculations (Python 3)
- python3-nanostat (1.4.0-3)
- statistics on long biological sequences
- python3-navarp (1.6.0-4)
- Navigation tool for ARPES data (Python 3)
- python3-noise (1.2.3-4 b7 [arm64], 1.2.3-4 b6 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32], 1.2.3-4 b4 [ia64, riscv64])
- Perlin noise for image generation
- python3-onnx (1.16.2-1 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.12.0-2 b3 [alpha], 1.7.0 dfsg-2 [ia64])
- Open Neural Network Exchange (ONNX) (Python)
- python3-parmed (4.3.0 dfsg-2)
- parameter and topology file editor and molecular mechanical simulator
- python3-pdbtools (2.5.1-2)
- tools for manipulating and editing PDB files (Python 3 package)
- python3-peptidebuilder (1.1.0-3)
- generate atomic oligopeptide 3D structure from sequence
- python3-pomegranate (0.14.8-7 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4], 0.14.8-6 b1 [sparc64], 0.14.8-6 [alpha, x32], 0.11.1 dfsg2-1 b1 [ia64])
- Fast, flexible and easy to use probabilistic modelling
- python3-prodigy (2.2.5-1)
- Protein Binding Affinity Prediction (Python 3)
- python3-prody (2.4.1 dfsg-2 b1 [m68k], 2.4.1 dfsg-2 [alpha, amd64, arm64, armel, armhf, mips64el, ppc64el, riscv64, sh4], 2.3.1 dfsg-3 b1 [i386])
- Python package for protein dynamics analysis
- python3-prody-tests (2.4.1 dfsg-2)
- Python package for protein dynamics analysis - test data
- python3-propka (3.5.1-2)
- heuristic pKa calculations with ligands (Python 3)
- python3-py2bit (0.3.2-1 [alpha, amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, sh4, x32], 0.3.1-2 [ia64], 0.3.0-5 b1 [m68k], 0.3.0-3 b1 [hppa, ppc64, sparc64])
- access to 2bit files
- python3-pyaml-env (1.2.1-2)
- Python3 YAML configuration with environment variables parsing
- python3-pybel (0.15.5-1)
- Biological Expression Language
- python3-pybigwig (0.3.23 dfsg-1 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 0.3.23 dfsg-1 [x32], 0.3.22 dfsg-1 b2 [ia64])
- Python 3 module for quick access to bigBed and bigWig files
- python3-pyimagetool (1.0-2)
- Image Tool for multidimensional analysis (Python 3)
- python3-pymbar (4.0.3-2)
- Python implementation of the multistate Bennett acceptance ratio (MBAR)
- python3-pynlpl (1.2.9-1)
- PyNLPl is a library for Natural Language Processing (Python 3 version)
- python3-pynndescent (0.5.11-1)
- nearest neighbor descent for approximate nearest neighbors
- python3-pyobjcryst (2024.2.1-1)
- Object-Oriented Crystallographic Library bindings (Python 3)
- python3-pyvista (0.44.1-10 [all], 0.44.1-1 [alpha, hppa, ppc64, sparc64])
- Python3 high-level API to the Visualization Toolkit (VTK)
- python3-pyvkfft (2024.1.4 ds1-3)
- Binding to the OpenCL backends of VkFFT - Python3
- python3-pyvkfft-cuda (2024.1.4 ds1-4) [contrib]
- Binding to the CUDA backends of VkFFT - Python3
- python3-pyxrd (0.8.4-5)
- modeling of X-ray diffraction (XRD) patterns of disordered lamellar structures
- python3-qiskit-aer (0.4.1-2) [debports]
- Quantum Information Science Kit (Qiskit): Aer
- python3-qiskit-terra (0.12.0-4 b2 [amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x], 0.12.0-4 b1 [alpha, hppa], 0.12.0-1 [x32])
- Quantum Information Science Kit (Qiskit) for Python 3
- python3-seqcluster (1.2.9 ds-4) [contrib]
- analysis of small RNA in NGS data
- python3-skorch (1.0.0-1)
- scikit-learn compatible neural network library that wraps PyTorch
- python3-tinyalign (0.2.2-1 b4 [arm64], 0.2.2-1 b3 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.2.2-1 b1 [ia64])
- numerical representation of differences between strings
- python3-torch-cluster (1.6.3-1 b3 [amd64, arm64, ppc64el, s390x], 1.6.3-1 b1 [riscv64])
- PyTorch extension library of optimized graph cluster algorithms (Python 3)
- python3-torch-geometric (2.6.1-1)
- Graph Neural Network Library for PyTorch
- python3-torch-ignite (0.4.12-1)
- High-level library to help with training and evaluating in PyTorch
- python3-torch-scatter (2.1.2-1 b3 [amd64, arm64, ppc64el, s390x], 2.1.2-1 b1 [riscv64])
- PyTorch Extension Library of Optimized Scatter Operations
- python3-torch-sparse (0.6.18-2 b3 [amd64, arm64, ppc64el, s390x], 0.6.18-2 b1 [riscv64])
- PyTorch Extension Library of Optimized Autograd Sparse Matrix Operations
- python3-torchaudio (0.13.1-1 b2 [amd64, arm64, ppc64el, s390x], 0.13.1-1 b1 [riscv64], 0.7.2-1 b2 [hppa])
- Data manipulation and transformation for audio signal processing
- python3-torchtext (0.14.1-2) [debports]
- Data loaders and abstractions for text and NLP
- python3-torchvision (0.19.1-1 b1 [amd64, arm64, ppc64el, riscv64, s390x], 0.8.2-1 b2 [hppa])
- Datasets, Transforms and Models specific to Computer Vision
- python3-truncnorm (0.0.2-2)
- Moments for truncated multivariate normal distributions for Python
- python3-weblogo (3.8.0-2)
- sequence logo generator
- python3-xeus-python-shell (0.15.10 ~0.6.1-2)
- Native jupyter kernel for python (python library)
- python3-xgboost (2.1.3-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.0.3-1 b1 [ia64])
- Scalable and Flexible Gradient Boosting (Python3)
- python3-xraydb (4.5.3-2)
- X-ray Reference Data (Python 3)
- python3-xraylarch (0.9.81 ds1-2)
- X-ray absorption, fluorescence spectroscopy and diffraction data analysis
- python3-xrt (1.6.0 ds1-1)
- XRay Tracer and wave propagation (Python 3)
- pyzo (4.15.0-1)
- interactive editor for scientific Python
- q2-alignment (2024.5.0-1)
- QIIME 2 plugin for generating and manipulating alignments
- q2-cutadapt (2024.5.0-1)
- QIIME 2 plugin to work with adapters in sequence data
- q2-dada2 (2024.5.0-1)
- QIIME 2 plugin to work with adapters in sequence data
- q2-demux (2024.5.0 dfsg-1)
- QIIME 2 plugin for demultiplexing of sequence reads
- q2-diversity-lib (2024.5.0-1)
- QIIME2 plugin to expose diversity metrics/measures as actions
- q2-emperor (2024.5.0-2)
- QIIME2 plugin for display of ordination plots
- q2-feature-classifier (2024.2.0-1)
- QIIME 2 plugin supporting taxonomic classification
- q2-feature-table (2024.5.0 dfsg-1)
- QIIME 2 plugin supporting operations on feature tables
- q2-fragment-insertion (2024.5.0-1)
- QIIME 2 plugin for fragment insertion
- q2-metadata (2024.5.0 dfsg-1)
- QIIME 2 plugin for working with and visualizing Metadata
- q2-phylogeny (2024.5.0-1)
- QIIME 2 plugin for phylogeny
- q2-quality-control (2024.5.0-1)
- QIIME 2 plugin for quality assurance of feature and sequence data
- q2-quality-filter (2024.5.0-1)
- QIIME2 plugin for PHRED-based filtering and trimming
- q2-sample-classifier (2024.5.0-2)
- QIIME 2 plugin for machine learning prediction of sample data
- q2-taxa (2024.5.0 dfsg-1)
- QIIME 2 plugin for working with feature taxonomy annotations
- q2-types (2024.5.0-1)
- QIIME 2 plugin defining types for microbiome analysis
- q2cli (2024.5.0-2)
- Click-based command line interface for QIIME 2
- q2templates (2024.5.0 ds-1)
- Design template package for QIIME 2 Plugins
- qcat (1.1.0-7)
- demultiplexing Oxford Nanopore reads from FASTQ files
- qcat-examples (1.1.0-7)
- demultiplexing Oxford Nanopore reads from FASTQ files (examples)
- qcumber (2.3.0-2)
- quality control of genomic sequences
- qemu-web-desktop (24.07.12 ds1-2 [amd64, arm64, ppc64el, riscv64], 21.05.03-1 [alpha, hppa, ia64, m68k, ppc64, sparc64])
- Remote desktop service with virtual machines in a browser (DARTS).
- qfits-tools (6.2.0-9 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 6.2.0-9 [alpha, ia64])
- FITS manipulation tools
- qfitsview (4.2 dfsg-1)
- FITS file viewer based on DPUSER
- qgis (3.34.14 dfsg-1 b1 [amd64, arm64, armel, armhf, i386, ppc64, ppc64el, riscv64, s390x], 3.34.13 dfsg-1 [hppa], 3.28.15 dfsg-1 [sh4], 3.28.7 dfsg-1 [alpha], 3.22.13 dfsg-1 b1 [x32], 3.16.16 dfsg-1 [m68k], 2.14.19 dfsg-1 [sparc64])
- 地理信息系统（GIS）
- qgis-api-doc (3.34.14 dfsg-1)
- QGIS API documentation
- qgis-common (3.34.14 dfsg-1)
- QGIS - architecture-independent data
- qgis-plugin-grass (3.34.14 dfsg-1 b1 [amd64, arm64, armel, armhf, i386, ppc64, ppc64el, riscv64, s390x], 3.34.13 dfsg-1 [hppa], 3.28.15 dfsg-1 [sh4], 3.28.7 dfsg-1 [alpha], 3.22.13 dfsg-1 b1 [x32], 3.16.16 dfsg-1 [m68k], 2.14.19 dfsg-1 [sparc64])
- GRASS plugin for QGIS
- qgis-plugin-grass-common (3.34.14 dfsg-1)
- GRASS plugin for QGIS - architecture-independent data
- qgis-provider-grass (3.34.14 dfsg-1 b1 [amd64, arm64, armel, armhf, i386, ppc64, ppc64el, riscv64, s390x], 3.34.13 dfsg-1 [hppa], 3.28.15 dfsg-1 [sh4], 3.28.7 dfsg-1 [alpha], 3.22.13 dfsg-1 b1 [x32], 3.16.16 dfsg-1 [m68k], 2.14.19 dfsg-1 [sparc64])
- GRASS provider for QGIS
- qgis-providers (3.34.14 dfsg-1 b1 [amd64, arm64, armel, armhf, i386, ppc64, ppc64el, riscv64, s390x], 3.34.13 dfsg-1 [hppa], 3.28.15 dfsg-1 [sh4], 3.28.7 dfsg-1 [alpha], 3.22.13 dfsg-1 b1 [x32], 3.16.16 dfsg-1 [m68k], 2.14.19 dfsg-1 [sparc64])
- collection of data providers to QGIS
- qgis-providers-common (3.34.14 dfsg-1)
- collection of data providers to QGIS - architecture-independent files
- qgis-server (3.34.14 dfsg-1 b1 [amd64, arm64, armel, armhf, i386, ppc64, ppc64el, riscv64, s390x], 3.34.13 dfsg-1 [hppa], 3.28.15 dfsg-1 [sh4], 3.28.7 dfsg-1 [alpha], 3.22.13 dfsg-1 b1 [x32], 3.16.16 dfsg-1 [m68k], 2.14.19 dfsg-1 [sparc64])
- QGIS server providing various OGC services
- qgis-server-bin (3.34.14 dfsg-1 b1 [amd64, arm64, armel, armhf, i386, ppc64, ppc64el, riscv64, s390x], 3.34.13 dfsg-1 [hppa], 3.28.15 dfsg-1 [sh4], 3.28.7 dfsg-1 [alpha], 3.22.13 dfsg-1 b1 [x32], 3.16.16 dfsg-1 [m68k])
- QGIS server providing various OGC services (executables)
- qgis-server-common (3.34.14 dfsg-1)
- QGIS server providing various OGC services (data)
- qgis-server-dummy (3.34.14 dfsg-1 b1 [amd64, arm64, armel, armhf, i386, ppc64, ppc64el, riscv64, s390x], 3.34.13 dfsg-1 [hppa], 3.28.15 dfsg-1 [sh4], 3.28.7 dfsg-1 [alpha], 3.22.13 dfsg-1 b1 [x32], 3.16.16 dfsg-1 [m68k])
- QGIS server providing various OGC services (dummy)
- qgis-server-landingpage (3.34.14 dfsg-1 b1 [amd64, arm64, armel, armhf, i386, ppc64, ppc64el, riscv64, s390x], 3.34.13 dfsg-1 [hppa], 3.28.15 dfsg-1 [sh4], 3.28.7 dfsg-1 [alpha], 3.22.13 dfsg-1 b1 [x32], 3.16.16 dfsg-1 [m68k])
- QGIS server providing various OGC services (landing page)
- qgis-server-wcs (3.34.14 dfsg-1 b1 [amd64, arm64, armel, armhf, i386, ppc64, ppc64el, riscv64, s390x], 3.34.13 dfsg-1 [hppa], 3.28.15 dfsg-1 [sh4], 3.28.7 dfsg-1 [alpha], 3.22.13 dfsg-1 b1 [x32], 3.16.16 dfsg-1 [m68k])
- QGIS server providing various OGC services (WCS)
- qgis-server-wfs (3.34.14 dfsg-1 b1 [amd64, arm64, armel, armhf, i386, ppc64, ppc64el, riscv64, s390x], 3.34.13 dfsg-1 [hppa], 3.28.15 dfsg-1 [sh4], 3.28.7 dfsg-1 [alpha], 3.22.13 dfsg-1 b1 [x32], 3.16.16 dfsg-1 [m68k])
- QGIS server providing various OGC services (WFS)
- qgis-server-wfs3 (3.34.14 dfsg-1 b1 [amd64, arm64, armel, armhf, i386, ppc64, ppc64el, riscv64, s390x], 3.34.13 dfsg-1 [hppa], 3.28.15 dfsg-1 [sh4], 3.28.7 dfsg-1 [alpha], 3.22.13 dfsg-1 b1 [x32], 3.16.16 dfsg-1 [m68k])
- QGIS server providing various OGC services (WFS 3)
- qgis-server-wms (3.34.14 dfsg-1 b1 [amd64, arm64, armel, armhf, i386, ppc64, ppc64el, riscv64, s390x], 3.34.13 dfsg-1 [hppa], 3.28.15 dfsg-1 [sh4], 3.28.7 dfsg-1 [alpha], 3.22.13 dfsg-1 b1 [x32], 3.16.16 dfsg-1 [m68k])
- QGIS server providing various OGC services (WMS)
- qgis-server-wmts (3.34.14 dfsg-1 b1 [amd64, arm64, armel, armhf, i386, ppc64, ppc64el, riscv64, s390x], 3.34.13 dfsg-1 [hppa], 3.28.15 dfsg-1 [sh4], 3.28.7 dfsg-1 [alpha], 3.22.13 dfsg-1 b1 [x32], 3.16.16 dfsg-1 [m68k])
- QGIS server providing various OGC services (WMTS)
- qgis3-survex-import (1.3-1)
- QGIS3 plugin to read survex 3d files, for cave surveying
- qiime (2024.5.0-1)
- Quantitative Insights Into Microbial Ecology
- qmapshack (1.17.1-1 b5 [amd64], 1.17.1-1 b4 [arm64, armhf], 1.17.1-1 b3 [i386, mips64el], 1.11.1-4 [alpha, m68k, ppc64, sh4], 1.11.1-3 [riscv64, x32], 1.11.1-1 [hppa], 1.9.0-1 [sparc64])
- GPS mapping (GeoTiff and vector) and GPSr management
- qmc (0.94-4.1 b1 [arm64, riscv64], 0.94-4.1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Quine McClusky Simplification Tool
- qrisk2 (0.1.20150729-7 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.1.20150729-6 [alpha], 0.1.20150729-5 [ia64])
- cardiovascular disease risk calculator
- qthid-fcd-controller (4.1-6 b3 [arm64], 4.1-6 b2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Funcube Dongle controller
- qtltools (1.3.1 dfsg-4 b4 [x32], 1.3.1 dfsg-4 b3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.3.1 dfsg-4 b2 [ia64], 1.3.1 dfsg-2 b1 [sh4])
- Tool set for molecular QTL discovery and analysis
- qttinysa (0.10.6-1)
- QT Gui for a tiny SA Spectrum Analyser
- quantum-espresso (6.7-3 b1 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 6.7-3 [armhf, i386, sh4, x32], 6.7-2 b4 [m68k], 6.7-2 b2 [ia64], 6.7-2 [hppa], 6.5-2 [alpha])
- Electronic-Structure and Ab-Initio Molecular Dynamics Suite
- quantum-espresso-data (6.7-3)
- Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation)
- quantum-espresso-data-sssp (1.3.0-2)
- Standard solid-state pseudopotentials (SSSP) library
- quicktree (2.5-6 b1 [arm64, riscv64], 2.5-6 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Neighbor-Joining algorithm for phylogenies
- quorum (1.1.2-2 b2 [mips64el, ppc64el, riscv64], 1.1.2-2 b1 [arm64], 1.1.2-2 [amd64], 1.1.1-5 [ia64])
- QUality Optimized Reads of genomic sequences
- qutemol (0.4.1~cvs20081111-15 b4 [arm64, mips64el, riscv64], 0.4.1~cvs20081111-15 b3 [alpha, amd64, armel, armhf, hppa, i386, ppc64, ppc64el, s390x, sh4, sparc64, x32], 0.4.1~cvs20081111-15 [ia64, m68k])
- interactive visualization of macromolecules
- r-cran-alakazam (1.3.0-1 b1 [arm64, riscv64], 1.3.0-1 [alpha, amd64, hppa, ia64, mips64el, ppc64, ppc64el, s390x, sh4], 1.2.1-1 [x32], 1.0.2-1 [sparc64], 0.3.0-1 [m68k])
- Immunoglobulin Clonal Lineage and Diversity Analysis
- r-cran-sdmtools (1.1-221.2-1 b2 [arm64, riscv64], 1.1-221.2-1 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Species Distribution Modelling Tools
- r-cran-shazam (1.2.0-1)
- Immunoglobulin Somatic Hypermutation Analysis
- r-cran-tigger (1.1.0-1)
- Infers new Immunoglobulin alleles from Rep-Seq Data
- racon (1.5.0-3 b1 [arm64, riscv64], 1.5.0-3 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- consensus module for raw de novo DNA assembly of long uncorrected reads
- radiant (2.8.1 dfsg-2)
- explore hierarchical metagenomic data with zoomable pie charts
- ragout (2.3-5 b1 [arm64], 2.3-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Reference-Assisted Genome Ordering UTility
- ragout-examples (2.3-5)
- Reference-Assisted Genome Ordering UTility (example data)
- rambo-k (1.21 dfsg-5)
- Read Assignment Method Based On K-mers
- rampler (2.1.1-1 b1 [arm64, riscv64], 2.1.1-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- module for sampling genomic sequences
- rapmap (0.15.0 dfsg-4 b2)
- rapid sensitive and accurate DNA read mapping via quasi-mapping
- rapmap-dev (0.15.0 dfsg-4)
- rapmap - rapid sensitive and accurate DNA read mapping (some headers)
- rapmap-example-data (0.15.0 dfsg-4)
- example data for rapmap - rapid sensitive and accurate DNA read mapping
- rasmol (2.7.6.0-3 b2 [arm64, riscv64], 2.7.6.0-3 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- visualization of biological macromolecules
- raster3d (3.0-7-2 b2 [riscv64], 3.0-7-2 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- tools for generating images of proteins or other molecules
- rate4site (3.0.0-8 b1 [arm64, riscv64], 3.0.0-8 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- detector of conserved amino-acid sites
- rawtran (1.1-1 b6 [arm64], 1.1-1 b5 [amd64, armel, armhf, i386, mips64el], 1.1-1 b4 [alpha, hppa, ia64, m68k, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- RAW photo to FITS converter
- raxml (8.2.13 dfsg-1 b3 [riscv64], 8.2.13 dfsg-1 b2 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32], 8.2.13 dfsg-1 b1 [alpha], 8.2.13 dfsg-1 [ia64])
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
- ray (2.3.1-9 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 2.3.1-8 b2 [x32], 2.3.1-8 b1 [ia64])
- de novo genome assemblies of next-gen sequencing data
- (2.3.1-9)
- Scripts and XSL sheets for post-processing for ray
- rdkit-data (202409.2-2)
- Collection of cheminformatics and machine-learning software (data files)
- rdp-classifier (2.10.2-7)
- extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
- readseq (1-15 b1 [arm64], 1-15 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Conversion between sequence formats
- readucks (0.0.3-6)
- Nanopore read de-multiplexer (read demux -> readux -> readucks, innit)
- reapr (1.0.18 dfsg-7 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.0.18 dfsg-6 [alpha], 1.0.18 dfsg-5 [ia64])
- universal tool for genome assembly evaluation
- recan (0.5 dfsg-1)
- genetic distance plotting for recombination events analysis
- refmac-dictionary (5.41-3)
- dictionary for macromolecular refinement and model building
- relion (3.1.3-4 b1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.1.3-4 [armel, armhf, hppa, i386, m68k, sh4, x32], 3.1.3-3 b2 [ia64])
- toolkit for 3D reconstructions in cryo-electron microscopy
- relion-cuda (3.1.3-2) [contrib]
- parallel toolkit for 3D reconstructions in cryo-electron microscopy
- relion-gui (3.1.3-4 b1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.1.3-4 [armel, armhf, hppa, i386, m68k, sh4, x32], 3.1.3-3 b2 [ia64])
- toolkit for 3D reconstructions in cryo-electron microscopy (gui apps)
- relion-gui-cuda (3.1.3-2) [contrib]
- toolkit for 3D reconstructions in cryo-electron microscopy (gui apps)
- repeatmasker-recon (1.08-8 b1 [arm64], 1.08-8 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- finds repeat families from biological sequences
- reprof (1.0.1-9)
- protein secondary structure and accessibility predictor
- resfinder (4.4.2-2)
- identify acquired antimicrobial resistance genes
- resfinder-db (0.0 git20220524.fa32d9a-1)
- ResFinder database is a curated database of acquired resistance genes
- resfinder-example (4.4.2-2)
- identify acquired antimicrobial resistance genes (example data)
- rna-star (2.7.11b dfsg-2 b1 [amd64, arm64, mips64el, ppc64el, riscv64], 2.7.11b dfsg-2 [alpha], 2.5.2a dfsg-2 [x32], 2.4.2a dfsg-1 b1 [m68k], 2.4.2a dfsg-1 [sh4])
- ultrafast universal RNA-seq aligner
- rnahybrid (2.1.2-8 b2 [riscv64], 2.1.2-8 b1 [arm64], 2.1.2-8 [alpha, amd64, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Fast and effective prediction of microRNA/target duplexes
- roary (3.13.0 dfsg-2)
- high speed stand alone pan genome pipeline
- rocketcea (1.2.1-2 [amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64el, riscv64, sh4], 1.2.1-1 [alpha], 1.1.18 dfsg-1 [x32])
- NASA Chemical Equilibrium, wrapped in Python
- rockhopper (2.0.3 dfsg2-4)
- system for analyzing bacterial RNA-seq data
- roguenarok (1.0.1-3 b1 [arm64, riscv64], 1.0.1-3 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- versatile and scalable algorithm for rogue taxon identification
- routine-update (0.2.1)
- routine updater for a Debian source package
- rsem (1.3.3 dfsg-3 b2 [arm64, riscv64], 1.3.3 dfsg-3 b1 [alpha, amd64, hppa, mips64el, ppc64, ppc64el, s390x, sparc64, x32], 1.3.2 dfsg-2 b1 [sh4], 1.2.26 dfsg-2 [m68k])
- RNA-Seq by Expectation-Maximization
- rtax (0.984-8)
- Classification of sequence reads of 16S ribosomal RNA gene
- ruby-getspg (2.5.0-1 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 2.5.0-1 [x32], 1.16.0-1 [ia64])
- C library for crystal symmetry determination - Ruby bindings
- ruby-rgfa (1.3.1 dfsg-2)
- parse, edit and write GFA format graphs in Ruby
- runcircos-gui (0.0 git20200528.82dda8c-1 b2 [arm64, riscv64], 0.0 git20200528.82dda8c-1 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- GUI tool to run circos
- sac2mseed (1.13 ds1-1 b2 [arm64], 1.13 ds1-1 b1 [amd64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 1.13 ds1-1 [alpha, hppa, ia64, m68k, ppc64, sh4, sparc64, x32])
- Convert SAC waveform data to MiniSEED
- saga (9.7.0 dfsg-1 [amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 9.6.3 dfsg-1 [alpha], 9.6.2 dfsg-1 [x32], 9.3.1 dfsg-3 [m68k], 8.5.0 dfsg-2 [ia64])
- System for Automated Geoscientific Analyses
- saga-common (9.7.0 dfsg-1)
- SAGA GIS architecture independent files
- saint (2.5.0 dfsg-4 b3 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, s390x], 2.5.0 dfsg-4 b2 [alpha, hppa, m68k, ppc64, riscv64, sh4, sparc64, x32], 2.5.0 dfsg-4 b1 [ia64])
- Significance Analysis of INTeractome
- salmid (0.1.23-5)
- rapid Kmer based Salmonella identifier from sequence data
- salmon (1.10.2 ds1-1 b4)
- wicked-fast transcript quantification from RNA-seq data
- sambamba (1.0.1 dfsg-2)
- tools for working with SAM/BAM data
- samblaster (0.1.26-4 b1 [arm64, riscv64], 0.1.26-4 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- marks duplicates, extracts discordant/split reads
- samclip (0.4.0-4)
- filter SAM file for soft and hard clipped alignments
- samtools (1.20-3 b1 [arm64], 1.20-3 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.19.2-1 b1 [ia64])
- processing sequence alignments in SAM, BAM and CRAM formats
- samtools-test (1.20-3)
- test files for the samtools package
- saods9 (8.6 repack-4)
- Image display tool for astronomy
- saoxmlrpc (8.6 repack-4)
- Tcl XML-RPC implementation from SAO
- sasview (5.0.6-5)
- Small Angle Scattering Analysis suite
- sat4j (2.3.5-0.3)
- Efficient library of SAT solvers in Java
- savi (1.6.0-1 b1 [arm64, riscv64], 1.6.0-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- satellite constellation visualisation
- savvy-util (2.1.0-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.1.0-2 [ia64])
- conversion tool for SAV file format
- sbmltoolbox (4.1.0-5.1)
- libsbml toolbox for octave and matlab
- scamp (2.10.0-4 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x], 2.10.0-2 [alpha, m68k], 2.0.4 dfsg-1 b2 [hppa], 2.0.4-3 [sparc64])
- Compute astrometric and photometric solutions
- science-config (1.14.7)
- Debian Science Project config package
- science-dataacquisition-dev (1.14.7)
- Debian Science data acquisition development packages
- science-electronics (1.14.7)
- Debian Science Electronics transitional package
- science-engineering-dev (1.14.7)
- Debian Science Engineering-dev packages
- science-highenergy-physics (1.14.7)
- Debian Science High Energy Physics packages
- science-highenergy-physics-dev (1.14.7)
- Debian Science High Energy Physics development packages
- science-machine-learning (1.14.7)
- Debian Science Machine Learning packages
- science-mathematics-dev (1.14.7)
- Debian Science Mathematics-dev packages
- science-meteorology-dev (1.14.7)
- Debian Science Meteorology-dev packages
- science-nanoscale-physics (1.14.7)
- Debian Science Nanoscale Physics packages
- science-nanoscale-physics-dev (1.14.7)
- Debian Science Nanoscale Physics development packages
- science-neuroscience-cognitive (1.14.7)
- Debian Science packages for Cognitive Neuroscience
- science-neuroscience-modeling (1.14.7)
- Debian Science packages for modeling of neural systems
- science-physics-dev (1.14.7)
- Debian Science Physics-dev packages
- science-robotics-dev (1.14.7)
- Debian Robotics development packages
- science-tasks (1.14.7)
- Debian Science tasks for tasksel
- science-viewing-dev (1.14.7)
- Debian Science development of visualisation applications
- scoary (1.6.16-10)
- pangenome-wide association studies
- scram (0.16.2-3 b3 [arm64], 0.16.2-3 b2 [amd64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x], 0.16.2-3 [x32])
- Probabilistic Risk Analysis Tool
- scram-gui (0.16.2-3 b3 [arm64], 0.16.2-3 b2 [amd64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x], 0.16.2-3 [x32])
- SCRAM GUI front-end
- scrappie (1.4.2-8 b7 [amd64, arm64, armhf, i386, mips64el, ppc64, ppc64el, s390x, sparc64], 1.4.2-8 b4 [riscv64])
- basecaller for Nanopore sequencer
- scrm (1.7.4-1 b1 [arm64, riscv64], 1.7.4-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- simulator of evolution of genetic sequences
- sctk (2.4.12 dfsg-1 [amd64, arm64, armel, armhf, hppa, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.4.10-20151007-1312Z dfsg2-3.1 [alpha, i386, ia64])
- speech recognition scoring toolkit
- scythe (0.994 git20141017.20d3cff-5 b1 [arm64], 0.994 git20141017.20d3cff-5 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.994 git20141017.20d3cff-4 [ia64])
- Bayesian adaptor trimmer for sequencing reads
- sdaps (1.9.8-0.1 b4 [riscv64], 1.9.8-0.1 b3 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, s390x], 1.9.8-0.1 b2 [hppa], 1.9.8-0.1 b1 [sparc64], 1.9.8-0.1 [x32])
- scripts for data acquisition with paper-based surveys
- sdml (0.3.1 20241024-1 [ppc64, sparc64], 0.3.1 20241014-3 b1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x]) [debports]
- CLI tool for Simple Domain Modeling Language (SDML)
- seaview (1:5.0.5-2 b2 [arm64, riscv64], 1:5.0.5-2 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Multiplatform interface for sequence alignment and phylogeny
- secrecy (0.0.5 ds-4 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 0.0.5 ds-4 [alpha, ia64, x32])
- tool to handle libsecrecy keys and encrypted files
- seer (1.1.4-8 b2 [x32], 1.1.4-8 b1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.1.4-8 [alpha, hppa, m68k, sh4], 1.1.4-6 [ia64])
- genomic sequence element (kmer) enrichment analysis
- segemehl (0.3.4-5 b2 [arm64, riscv64], 0.3.4-5 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- short read mapping with gaps
- segyio-bin (1.8.3-1.2)
- SEG-Y read/write library for seismic processing (shell utilities)
- sentencepiece (0.2.0-1 b3 [arm64], 0.2.0-1 b2 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.2.0-1 [ia64])
- Unsupervised text tokenizer and detokenizer
- sepp (4.5.5 dfsg-1)
- phylogeny with ensembles of Hidden Markov Models
- seq-gen (1.3.4-2 b1 [riscv64], 1.3.4-2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, s390x]) [non-free]
- simulate the evolution of nucleotide or amino acid sequences
- seqan-apps (2.4.0 dfsg-16 b1 [arm64], 2.4.0 dfsg-16 [alpha, amd64, armel, armhf, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4], 2.4.0 dfsg-15 [hppa], 2.4.0 dfsg-11 [x32], 2.3.2 dfsg2-4 [sparc64])
- C library for the analysis of biological sequences
- seqan-needle (1.0.3 ds-1 [alpha, amd64, arm64, mips64el, ppc64el, riscv64], 1.0.2 ds-2 [ia64])
- pre-filter for the counting of very large collections of nucleotide sequences
- seqan-raptor (3.0.1 ds-5 b1 [arm64, riscv64], 3.0.1 ds-5 [alpha, amd64, mips64el, ppc64el], 3.0.1 ds-2 [sparc64], 3.0.0 ds-2 [ppc64], 2.0.0.0.git.fecfbca ds-3 [ia64])
- pre-filter for querying very large collections of nucleotide sequences
- seqan-raptor-doc (3.0.1 ds-5)
- HTML & PDF documentation for seqan-raptor and its APIs
- seqcluster (1.2.9 ds-4) [contrib]
- analysis of small RNA in NGS data
- seqkit (2.8.2 ds-2)
- cross-platform and ultrafast toolkit for FASTA/Q file manipulation
- seqkit-examples (2.8.2 ds-2)
- examples for seqkit: toolkit for FASTA/Q file manipulation
- seqmagick (0.8.6-3)
- imagemagick-like frontend to Biopython SeqIO
- seqprep (1.3.2-9 b1 [arm64], 1.3.2-9 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- stripping adaptors and/or merging paired reads of DNA sequences with overlap
- seqprep-data (1.3.2-9)
- example data set for seqprep - only used for testing
- seqsero (1.0.1 dfsg-6)
- Salmonella serotyping from genome sequencing data
- seqtk (1.4-2 b1 [arm64, riscv64], 1.4-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
- seriation (0.1 git20210125.fc7b8cb-1 b1 [arm64, riscv64], 0.1 git20210125.fc7b8cb-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- finds a suitable linear order for a set of objects
- seriation-data (0.1 git20210125.fc7b8cb-1)
- test data for seriation
- sga (0.10.15-7 b1 [amd64, arm64, armel, armhf, i386, ia64, m68k, mips64el, ppc64el, riscv64, x32], 0.10.15-7 [alpha], 0.10.15-4 [sh4], 0.10.14-2 [hppa, ppc64, sparc64])
- de novo genome assembler that uses string graphs
- shapeit4 (4.2.2 dfsg-1 b4 [arm64], 4.2.2 dfsg-1 b3 [alpha, amd64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sparc64, x32], 4.2.2 dfsg-1 b2 [hppa, ia64, m68k, ppc64, sh4])
- fast and accurate method for estimation of haplotypes (phasing)
- shasta (0.12.0-1 b2 [arm64], 0.12.0-1 b1 [amd64])
- nanopore whole genome assembly (binaries and scripts)
- shelxle (1.0.1552-1 b2 [amd64, arm64, riscv64], 1.0.1552-1 b1 [alpha, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- graphical user interface for SHELXL
- shiny-server (1.5.20.1002-3)
- put Shiny web apps online
- shovill (1.1.0-9 [amd64], 1.1.0-7 [hppa, ia64, m68k, ppc64, riscv64, sh4, sparc64, x32], 1.1.0-2 [alpha])
- Assemble bacterial isolate genomes from Illumina paired-end reads
- shovill-examples (1.1.0-9)
- Test Data for shovill
- sibelia (3.0.7 dfsg-3 b1 [arm64, riscv64], 3.0.7 dfsg-3 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- comparative genomics tool
- sibelia-examples (3.0.7 dfsg-3)
- comparative genomics tool (example data)
- sibsim4 (0.20-5 b1 [arm64, riscv64], 0.20-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- align expressed RNA sequences on a DNA template
- sickle (1.33 git20150314.f3d6ae3-2 b1 [arm64, riscv64], 1.33 git20150314.f3d6ae3-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- windowed adaptive trimming tool for FASTQ files using quality
- siconos (4.4.0 dfsg-4)
- modeling and simulation of nonsmooth dynamical systems (simulation runner tool)
- siconos-mechanics-tools (4.4.0 dfsg-4)
- modeling and simulation of nonsmooth dynamical systems (mechanics tools)
- sift (4.0.3b-6 b1) [non-free]
- predicts if a substitution in a protein has a phenotypic effect
- sightcalibrator (24.1.0-1)
- Camera calibration software
- sightviewer (24.1.0-1)
- DICOM viewer
- sigma-align (1.1.3-9 b1 [arm64], 1.1.3-9 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Simple greedy multiple alignment of non-coding DNA sequences
- sigviewer (0.6.4-3 b2 [arm64, armel, armhf, riscv64], 0.6.4-3 b1 [alpha, amd64, i386, mips64el, ppc64, ppc64el, s390x, sparc64, x32], 0.6.4-3 [hppa, m68k, sh4])
- GUI viewer for biosignals such as EEG, EMG, and ECG
- silx (2.1.2 dfsg-1)
- Toolbox for X-Ray data analysis - Executables
- sim4 (0.0.20121010-8 b1 [arm64, riscv64], 0.0.20121010-8 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- tool for aligning cDNA and genomic DNA
- sim4db (0~20150903 r2013-9 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0~20150903 r2013-8 b3 [ia64])
- batch spliced alignment of cDNA sequences to a target genome
- simgrid-java (3.11.1-10) [debports]
- Java bindings for the SimGrid Toolkit
- simka (1.5.3-8 b2 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, sparc64], 1.5.3-8 b1 [alpha, ia64], 1.5.3-7 [x32], 1.5.3-6 [hppa])
- comparative metagenomics method dedicated to NGS datasets
- simkamin (1.5.3-8)
- approximate comparative metagenomics method dedicated to NGS datasets
- simrisc (16.02.00-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 15.05.00-1 [ia64, m68k, sh4, x32])
- simulation model for breast/lung cancer risk
- siril (1.2.5-1.1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 1.2.5-1 [alpha], 0.9.12-2 [x32], 0.9.7-1 [sh4])
- astronomical image processing tool
- siril-common (1.2.5-1.1)
- architecture-independent files for siril
- ska (1.0 dfsg-4)
- Split Kmer Analysis
- skesa (2.4.0-6 b3 [arm64], 2.4.0-6 b2 [amd64], 2.4.0-4 [x32])
- strategic Kmer extension for scrupulous assemblies
- skewer (0.2.2-6 b2 [arm64], 0.2.2-6 b1 [amd64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 0.2.2-6 [alpha, hppa, ia64, m68k, ppc64, sh4, sparc64, x32])
- post-processing of high-throughput DNA sequence reads
- skycat (3.1.2 starlink1~b dfsg-9 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.1.2 starlink1~b dfsg-7 b2 [ia64])
- Image visualization and access to catalogs and data for astronomy
- slang-xfig (0.2.0~.138-1 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.2.0~.138-1 [alpha, ia64])
- produce plots and drawings through Xfig's fig2dev in S-Lang
- smalt (0.7.6-13 b1 [arm64], 0.7.6-13 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- Sequence Mapping and Alignment Tool
- smalt-examples (0.7.6-13)
- Sequence Mapping and Alignment Tool (examples)
- smiles-scripts (0.2.0 svn754 branch system deps-1)
- command line tools to handle SMILES descriptors
- smithwaterman (0.0 git20160702.2610e25-12 b2 [alpha, amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.0 git20160702.2610e25-12 b1 [ia64], 0.0 git20160702.2610e25-12 [m68k])
- determine similar regions between two strings or genomic sequences
- smrtanalysis (0~20210112)
- software suite for single molecule, real-time sequencing
- snakemake (7.32.4-6)
- pythonic workflow management system
- snap (2013-11-29-11 b1 [arm64, riscv64], 2013-11-29-11 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- location of genes from DNA sequence with hidden markov model
- snap-aligner (2.0.3 dfsg-2 b1 [arm64], 2.0.3 dfsg-2 [alpha, amd64, mips64el, ppc64el, riscv64])
- Scalable Nucleotide Alignment Program
- snaphu (2.0.7-1) [non-free]
- Statistical-Cost, Network-Flow Algorithm for 2D Phase Unwrapping
- sniffles (2.2-1)
- structural variation caller using third-generation sequencing
- snippy (4.6.0 dfsg-5)
- rapid haploid variant calling and core genome alignment
- snippy-examples (4.6.0 dfsg-5)
- rapid haploid variant calling and core genome alignment (examples)
- snp-sites (2.5.1-2 b2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.5.1-2 [ia64])
- Binary code for the package snp-sites
- snpomatic (1.0-7 b1 [arm64], 1.0-7 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.0-5 [ia64])
- fast, stringent short-read mapping software
- soapaligner (2.20-5)
- aligner of short reads of next generation sequencers
- soapdenovo (1.05-6)
- short-read assembly method to build de novo draft assembly
- soapdenovo2 (242 dfsg-4 [amd64, ppc64], 242 dfsg-3 [ia64])
- short-read assembly method to build de novo draft assembly
- soapsnp (1.03-5 b1 [arm64, riscv64], 1.03-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- resequencing utility that can assemble consensus sequence of genomes
- solvate (1.0-3) [non-free]
- arranges water molecules around protein structures
- solvate-doc (1.0-3) [non-free]
- Documentation for solvate
- sortmerna (4.3.7-2 b1 [amd64, i386], 2.1-5 [x32])
- tool for filtering, mapping and OTU-picking NGS reads
- (2.28.0 ds-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.28.0 ds-1 b1 [ia64])
- Source extractor for astronomical images
- sp800-90b-entropy-assessment (1.1.8-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.1.5-4 b1 [ia64])
- Estimating the quality of a source of entropy
- spaced (1.2.0-201605 dfsg-4 b1 [arm64], 1.2.0-201605 dfsg-4 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- alignment-free sequence comparison using spaced words
- spades (3.15.5 dfsg-8)
- genome assembler for single-cell and isolates data sets
- spaln (3.0.2 dfsg-2 b1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 3.0.2 dfsg-2 [ia64], 2.4.7 dfsg-1 [hppa, m68k, sh4, x32])
- splicing-aware transcript-alignment to genomic DNA
- spaln-data (3.0.2 dfsg-2)
- splicing-aware transcript-alignment to genomic DNA (data)
- spass (3.9-1.1 b1 [riscv64], 3.9-1.1 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- automated theorem prover for first-order logic with equality
- spatialite-bin (5.1.0a-1 b3 [arm64, riscv64], 5.1.0a-1 b2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Geospatial extension for SQLite - tools
- spd (1.3.0-1.1 b1 [arm64, riscv64], 1.3.0-1.1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Synchrotron image corrections and azimuthal integration
- splash (3.11.1-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.10.1-2 [ia64])
- Visualisation tool for Smoothed Particle Hydrodynamics simulation
- spoa (4.1.4-2 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 4.1.4-2 [alpha], 4.1.4-1 [ia64])
- SIMD partial order alignment tool
- sprai (0.9.9.23 dfsg1-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.9.9.23 dfsg1-2 [ia64])
- single-pass sequencing read accuracy improver
- spread-phy (1.0.7 dfsg-5)
- analyze and visualize phylogeographic reconstructions
- spview (2.0.2-1)
- Spectrum Viewer
- squizz (0.99d dfsg-3) [debports]
- Converter for genetic sequences and alignments
- sra-toolkit (3.0.9 dfsg-7 b1 [amd64, arm64], 2.3.5-2 dfsg-1 [x32])
- utilities for the NCBI Sequence Read Archive
- sra-toolkit-libs-dev (2.3.5-2 dfsg-1) [debports]
- Development files for the NCBI SRA Toolkit's libraries
- sra-toolkit-libs0 (2.3.5-2 dfsg-1) [debports]
- Libraries for the SRA Toolkit
- srst2 (0.2.0-13 [alpha, amd64, arm64, m68k, mips64el, ppc64, ppc64el, riscv64, sh4, sparc64], 0.2.0-11 [ia64], 0.1.8-1 [hppa, x32])
- Short Read Sequence Typing for Bacterial Pathogens
- ssake (4.0.1-2)
- genomics application for assembling millions of very short DNA sequences
- ssake-examples (4.0.1-2)
- example data for SSAKE, a genomic assembler of short reads
- sspace (2.1.1 dfsg-7)
- scaffolding pre-assembled contigs after extension
- ssshtest (0.0 git20220105.0d6df3d-1)
- stupid simple (ba)sh testing
- ssw-align (1.1-15 b1 [amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.1-15 [alpha], 1.1-14 [ia64])
- Smith-Waterman aligner based on libssw
- stacks (2.68 dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.66 dfsg-1 b1 [ia64])
- pipeline for building loci from short-read DNA sequences
- staden (2.0.0 b11-5 b1 [arm64], 2.0.0 b11-5 [alpha, amd64, armel, armhf, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.0.0 b11-4 b1 [hppa])
- DNA sequence assembly (Gap4/Gap5), editing and analysis tools
- staden-common (2.0.0 b11-5)
- Architecture independent files for Staden
- staden-io-lib-examples (1.15.0-1.1)
- programs for manipulating DNA sequencing files (usage examples)
- staden-io-lib-utils (1.15.0-1.1 b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.15.0-1.1 b1 [alpha, ia64, m68k], 1.14.15-1 [hppa])
- programs for manipulating DNA sequencing files
- stardata-common (0.8 nmu1 b1 [riscv64], 0.8 nmu1 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Common framework to manage astronomy packages
- starpu-contrib-examples (1.4.5 dfsg-2 b2) [contrib]
- Task scheduler for heterogeneous multicore machines - exs
- starpu-examples (1.4.5 dfsg-4 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 1.4.5 dfsg-2 b1 [x32], 1.4.5 dfsg-1 b1 [ia64])
- Task scheduler for heterogeneous multicore machines - exs
- stellarium (24.3-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, x32], 24.1-1 [sparc64], 0.22.1-1 [ia64])
- 实时、逼真的星图软件
- stellarium-data (24.3-1)
- Stellarium data files
- step (4:24.12.0-1 [amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x], 4:22.12.3-1 b3 [sh4], 4:22.12.3-1 [alpha, m68k], 4:21.12.3-1 [x32], 4:21.08.0-1 b2 [ia64], 4:19.08.1-1 [sparc64])
- interactive physical simulator for KDE
- stiff (2.4.0-7 b2 [arm64], 2.4.0-7 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- convert scientific FITS images to the TIFF format
- stilts (3.5.1-2)
- Starlink Tables Infrastructure Library Tool Set
- stimfit (0.16.0-1.2 b4 [ppc64], 0.16.0-1.2 b1 [riscv64, sparc64], 0.16.0-1.2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64el, s390x, sh4, x32], 0.16.0-1 b2 [ia64])
- Program for viewing and analyzing electrophysiological data
- stringtie (2.2.1 ds-3 b2 [arm64], 2.2.1 ds-3 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- assemble short RNAseq reads to transcripts
- subarch-select (0.2-1)
- Select among binaries based upon x86 microarchitecture support
- subread (2.0.7 dfsg-1 [alpha, amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, sh4, x32], 2.0.6 dfsg-3 [ia64])
- toolkit for processing next-gen sequencing data
- subread-data (2.0.7 dfsg-1)
- data files for subread package
- suitename (0.4.130509 git20210223.ebb1325-1 b1 [arm64, riscv64], 0.4.130509 git20210223.ebb1325-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- categorize each suite in an RNA backbone
- sumaclust (1.0.36 ds-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.0.36 ds-2 [ia64])
- fast and exact clustering of genomic sequences
- sumatra (1.0.36 ds-2 b1 [riscv64], 1.0.36 ds-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- fast and exact comparison and clustering of sequences
- sumo (1.18.0 dfsg-4 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.18.0 dfsg-3 b1 [ia64], 1.4.0 dfsg1-1 b1 [hppa])
- Simulation of Urban MObility (SUMO)
- surankco (0.0.r5 dfsg-4)
- Supervised Ranking of Contigs in de novo Assemblies
- surpyvor (0.5-2)
- modification of VCF files with SURVIVOR
- survex (1.4.14-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 1.4.13-2 [x32], 1.4.4-1 b1 [m68k], 1.2.42-1 b1 [ia64])
- cave surveying and mapping software
- survex-aven (1.4.14-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 1.4.13-2 [x32], 1.4.4-1 b1 [m68k], 1.2.42-1 b1 [ia64])
- sophisticated cave survey viewer for Survex
- survivor (1.0.7-4 b1 [riscv64], 1.0.7-4 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- tool set for simulating/evaluating SVs
- svim (2.0.0-3)
- Structural variant caller for long sequencing reads
- swarm (3.1.5 dfsg-2 b1 [arm64], 3.1.5 dfsg-2 [amd64, ppc64el])
- robust and fast clustering method for amplicon-based studies
- swarp (2.41.5-1 b4 [arm64], 2.41.5-1 b3 [amd64, armel, armhf, i386, mips64el, s390x], 2.41.5-1 b2 [alpha, hppa, ia64, m68k, ppc64, ppc64el, riscv64, sh4, sparc64, x32])
- Resample and co-add together FITS images
- swe-standard-data (4.0-20221111-2)
- Swiss Ephemeris library (standard set of ephemeris files).
- sweed (3.2.1 dfsg-6 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.2.1 dfsg-5 [ia64])
- assessment of SNPs for their evolutionary advantage
- syrthes (4.3.5 20200129-dfsg1-1 b3 [riscv64], 4.3.5 20200129-dfsg1-1 b2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, x32], 4.3.0-dfsg1-3 [sparc64], 4.3.0-dfsg1-2 [ia64])
- Transient thermal simulations in complex solid geometries
- syrthes-gui (4.3.5 20200129-dfsg1-1)
- Transient thermal simulations in complex solid geometries - GUI
- syrthes-tests (4.3.5 20200129-dfsg1-1)
- Test cases for SYRTHES
- syrthes-tools (4.3.5 20200129-dfsg1-1 b3 [riscv64], 4.3.5 20200129-dfsg1-1 b2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, x32], 4.3.0-dfsg1-3 [sparc64], 4.3.0-dfsg1-2 [ia64])
- Transient thermal simulations in complex solid geometries - tools
- t-coffee (13.45.0.4846264 really13.41.0.28bdc39 dfsg-1 b1 [arm64, riscv64], 13.45.0.4846264 really13.41.0.28bdc39 dfsg-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Multiple Sequence Alignment
- t-coffee-examples (13.45.0.4846264 really13.41.0.28bdc39 dfsg-1)
- annotated examples for the use of T-Coffee
- tabix (1.20 ds-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.19 ds-1.1 b1 [ia64])
- generic indexer for TAB-delimited genome position files
- tandem-mass (1:201702011-1 b1 [amd64, riscv64], 1:201702011-1 [alpha, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- mass spectrometry software for protein identification
- tantan (51-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 49-2 [ia64])
- low complexity and tandem repeat masker for biosequences
- tcd-utils (20061127-2.1) [debports]
- convert Tide Constituent Database (TCD) files
- tclfitsy (8.6 repack-4 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 8.5 repack-1 b1 [ia64])
- Tcl FITS Extension
- terraintool (1.19-1)
- Generates survex/therion terrain models from SRTM/NASADEM data.
- theli (3.1.4-2 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x], 3.1.4-1 b4 [alpha], 3.1.4-1 b2 [m68k])
- Astronomical image data reduction pipeline
- therion (6.3.1-2 [amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 6.2.0-1 b1 [m68k], 6.2.0-1 [alpha], 5.5.1ds1-1 [x32])
- Cave surveying - 2D and 3D drawing software
- therion-viewer (6.3.1-2 [amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 6.2.0-1 b1 [m68k], 6.2.0-1 [alpha], 5.5.1ds1-1 [x32])
- Cave surveying - 3D viewer for therion models
- theseus (3.3.0-14 b1)
- superimpose macromolecules using maximum likelihood
- theseus-examples (3.3.0-14)
- superimpose macromolecules using maximum likelihood (examples)
- thesias (3.1.1-3 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.1.1-2 [ia64])
- Testing Haplotype Effects In Association Studies
- threeb (0.0~git20220106110332.a3144e0-6 b2 [riscv64], 0.0~git20220106110332.a3144e0-6 b1 [amd64, i386, m68k, s390x, sh4, sparc64, x32], 0.0~git20220106110332.a3144e0-6 [armel, armhf])
- 3B Microscopy Analysis Software - command-line tool
- threeb-imagej (0.0~git20220106110332.a3144e0-6 b2 [riscv64], 0.0~git20220106110332.a3144e0-6 b1 [amd64, i386, m68k, s390x, sh4, sparc64, x32], 0.0~git20220106110332.a3144e0-6 [armel, armhf])
- 3B Microscopy Analysis Software - ImageJ plugin
- tiddit (3.6.1 dfsg-1 b4 [arm64], 3.6.1 dfsg-1 b3 [alpha, amd64, armel, armhf, i386, m68k, mips64el, ppc64el, riscv64, sh4], 3.6.1 dfsg-1 b2 [x32], 3.6.1 dfsg-1 b1 [ia64], 2.12.2 dfsg-1 b1 [hppa, ppc64])
- structural variant calling
- tigr-glimmer (3.02b-6 b2 [arm64], 3.02b-6 b1 [amd64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 3.02b-6 [alpha, hppa, ia64, m68k, ppc64, sh4, sparc64, x32])
- Gene detection in archea and bacteria
- timbl (6.9-2 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 6.9-2 [alpha], 6.5-3.1 b1 [ia64])
- Tilburg Memory Based Learner
- timblserver (1.18-3 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.18-3 [alpha], 1.14-3.1 b1 [ia64])
- Server extensions for Timbl
- tiny-dnn (1.0.0a3 ds-4)
- header only deep learning framework in C
- tipp (1.0 dfsg-3)
- tool for Taxonomic Identification and Phylogenetic Profiling
- tippecanoe (2.53.0-1 b1 [arm64], 2.53.0-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32])
- build vector tilesets from large collections of GeoJSON features
- tksao (8.6 repack-4 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 8.5 repack-1 b1 [ia64])
- Tk widgets for astronomical imaging and data visualization
- tm-align (20190822 dfsg-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 20190822 dfsg-2 [ia64])
- structural alignment of proteins
- tnseq-transit (3.3.4-1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4], 3.1.0-2 [alpha, x32], 2.3.2-1 [ia64, sparc64])
- statistical calculations of essentiality of genes or genomic regions
- tombo (1.5.1-7 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.5.1-4 [ia64])
- identification of modified nucleotides from raw nanopore sequencing data
- topcat (4.10.2-1)
- Tool for OPerations on Catalogues And Tables
- tophat-recondition (1.4-3)
- post-processor for TopHat unmapped reads
- topp (2.6.0 cleaned1-4 b4 [amd64, arm64, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 2.6.0 cleaned1-4 b3 [hppa], 2.6.0 cleaned1-4 [ia64, x32], 2.6.0 cleaned1-3 b5 [alpha], 2.6.0 cleaned1-3 b3 [m68k])
- set of programs implementing The OpenMS Proteomic Pipeline
- topparser (1.3-3)
- Conversion utility from pockettopo to therion, for cave surveying
- toppic (1.5.3 dfsg1-1 b3 [arm64, riscv64, x32], 1.5.3 dfsg1-1 b2 [alpha, amd64, armel, armhf, hppa, i386, ia64, mips64el, ppc64, ppc64el, s390x, sh4, sparc64], 1.5.3 dfsg1-1 [m68k])
- Top-down proteoform identification and characterization (programs)
- toppic-common (1.5.3 dfsg1-1)
- Top-down proteoform identification and characterization (common data)
- toppred (1.10-10 b1 [arm64, riscv64], 1.10-10 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- transmembrane topology prediction
- tortoize (2.0.13-1 [amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64el, riscv64, sh4], 2.0.11-1 b2 [sparc64], 2.0.11-1 b1 [alpha, ppc64, s390x, x32], 2.0.11-1 [ia64], 2.0.5-2 [hppa])
- Application to calculate ramachandran z-scores
- toulbar2 (1.2.1 dfsg-0.1 b1 [x32], 1.2.1 dfsg-0.1 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64])
- Exact combinatorial optimization for Graphical Models
- toulbar2-doc (1.2.1 dfsg-0.1)
- Exact combinatorial optimization for Graphical Models - documentation
- trace2dbest (3.0.1-2)
- bulk submission of chromatogram data to dbEST
- trace2dbest-doc (3.0.1-2)
- Documentation and sample files for trace2dbest
- tracetuner (3.0.6~beta dfsg-3 b1 [arm64, riscv64], 3.0.6~beta dfsg-3 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- interpretation of DNA Sanger sequencing data
- transdecoder (5.7.1-2)
- find coding regions within RNA transcript sequences
- transfuse (0.5.8-1 b5 [arm64], 0.5.8-1 b4 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32], 0.5.8-1 b3 [riscv64])
- Runs formatted documents through transformations/translation
- transrate-tools (1.0.0-5 b1 [riscv64], 1.0.0-5 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- helper for transrate
- transtermhp (2.09-5 b1 [arm64, riscv64], 2.09-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- find rho-independent transcription terminators in bacterial genomes
- travis (220729-1 b1 [arm64, riscv64], 220729-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- trajectory analyzer and visualizer
- tree-ppuzzle (5.3~rc16 dfsg-12 b1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 5.3~rc16 dfsg-12 [armel, armhf, hppa, i386, m68k, sh4, x32], 5.3~rc16 dfsg-9 b1 [ia64])
- Parallelized reconstruction of phylogenetic trees by maximum likelihood
- tree-puzzle (5.3~rc16 dfsg-12 b1 [alpha, amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 5.3~rc16 dfsg-12 [armel, armhf, hppa, i386, m68k, sh4, x32], 5.3~rc16 dfsg-9 b1 [ia64])
- Reconstruction of phylogenetic trees by maximum likelihood
- treeview (1.2.0 dfsg-2)
- Java re-implementation of Michael Eisen's TreeView
- treeviewx (0.5.1 git20100823.7e4d0e9-4 b5 [arm64, mips64el], 0.5.1 git20100823.7e4d0e9-4 b4 [alpha, amd64, armel, armhf, hppa, i386, ppc64, ppc64el, s390x, sh4, sparc64], 0.5.1 git20100823.7e4d0e9-4 b3 [riscv64], 0.5.1 git20100823.7e4d0e9-4 b2 [x32], 0.5.1 git20100823.7e4d0e9-4 [ia64, m68k])
- Displays and prints phylogenetic trees
- trf (4.09.1-6 b1 [arm64, riscv64], 4.09.1-6 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- locate and display tandem repeats in DNA sequences
- trf-examples (4.09.1-6)
- locate and display tandem repeats in DNA sequences (examples)
- triangle-bin (1.6-6) [non-free]
- High-quality 2-D mesh generator -- binary programs
- trim-galore (0.6.10-1)
- automate quality and adapter trimming for DNA sequencing
- trimmomatic (0.39 dfsg-2)
- flexible read trimming tool for Illumina NGS data
- trinculo (0.96 dfsg-4 b2 [arm64], 0.96 dfsg-4 b1 [amd64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 0.96 dfsg-4 [alpha, hppa, ia64, m68k, ppc64, sh4, sparc64, x32])
- toolkit to carry out genetic association for multi-category phenotypes
- trinityrnaseq (2.15.2 dfsg-1 [amd64, arm64, ppc64el, riscv64], 2.15.1 dfsg-2 [alpha, ia64, m68k, ppc64, sh4, sparc64, x32])
- RNA-Seq De novo Assembly
- trinityrnaseq-examples (2.15.2 dfsg-1)
- RNA-Seq De novo Assembly common example and testing files
- trnascan-se (2.0.12 ds-1) [non-free]
- detection of transfer RNA genes in genomic sequence
- trnascan-se-common (2.0.12 ds-1) [non-free]
- detection of transfer RNA genes in genomic sequence (common files)
- tunnelx (20190701-1)
- Cave Survey drawing software
- tvc (5.0.3 git20151221.80e144e dfsg-5 b3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 5.0.3 git20151221.80e144e dfsg-5 b1 [ia64])
- genetic variant caller for Ion Torrent sequencing platforms
- twms (0.07z git20201202 bb7c3f8-2.1)
- tiny web map service
- twopaco (1.0.0 dfsg-1 b1 [arm64, riscv64], 1.0.0 dfsg-1 [alpha, amd64, armhf, hppa, i386, ia64, mips64el, ppc64, ppc64el, s390x, sparc64, x32])
- build the compacted de Bruijn graph from many complete genomes
- ubertooth (2018.12.R1-5.2 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2018.12.R1-5.1 [alpha, ia64])
- 2.4 GHz wireless development platform for Bluetooth experimentation
- ubertooth-firmware (2018.12.R1-5.2)
- Firmware for Ubertooth
- ubertooth-firmware-source (2018.12.R1-5.2)
- Source code for the Ubertooth firmware
- uc-echo (1.12-19 b1 [arm64], 1.12-19 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.12-18 [ia64])
- error correction algorithm designed for short-reads from NGS
- ucto (0.30-3 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.30-3 [alpha], 0.21.1-2.1 b1 [ia64])
- Unicode Tokenizer
- uctodata (0.9.1-1)
- Data files for Ucto
- ucx-utils (1.17.0 ds-3)
- Utilities for the UCX messaging library
- ugene (51.0 dfsg-2)
- integrated bioinformatics toolkit
- ugene-data (51.0 dfsg-2)
- required data for UGENE - integrated bioinformatics toolkit
- uhd-doc (4.7.0.0 ds1-2)
- universal hardware driver for Ettus Research products - doc
- uhd-host (4.7.0.0 ds1-2 b3 [x32], 4.7.0.0 ds1-2 b2 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 4.7.0.0 ds1-2 [alpha], 4.6.0.0 ds1-6 [ia64], 4.3.0.0 ds1-5 [sh4])
- universal hardware driver for Ettus Research products - host apps
- umap-learn (0.5.4 dfsg-1)
- Uniform Manifold Approximation and Projection
- umis (1.0.9-2 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64el, riscv64, sh4, x32], 1.0.9-1 [ia64], 1.0.3-1 [hppa, ppc64, sparc64])
- tools for processing UMI RNA-tag data
- umis-examples (1.0.9-2)
- tools for processing UMI RNA-tag data (examples)
- uncalled (2.3 ds-3 b1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 2.3 ds-3 [alpha, hppa, m68k, sh4], 2.3 ds-1 b1 [ia64])
- Utility for Nanopore Current Alignment to Large Expanses of DNA
- unicycler (0.5.1 dfsg-1.1)
- hybrid assembly pipeline for bacterial genomes
- unicycler-data (0.5.1 dfsg-1.1)
- hybrid assembly pipeline for bacterial genomes (data package)
- unifrac-tools (1.4-3 b4 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64], 1.4-3 b3 [x32], 1.4-3 b2 [m68k, sh4], 1.4-3 b1 [alpha, ia64])
- high-performance phylogenetic diversity calculations (binaries)
- unihedron-device-manager (1.0.0.337-1 b1)
- Unihedron Device manager (UDM)
- unikmer (0.20.0-1 b3)
- Toolkit for nucleic acid k-mer analysis
- units-filter (4.2.1-1 b2 [riscv64], 4.2.1-1 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, s390x, x32], 4.0-1 [ia64, m68k, sh4, sparc64])
- Parser for expressions concerning physical values
- units-master (4.2.1-1)
- Powerful units converter with a GUI
- v-sim (3.7.2-9 b2 [riscv64], 3.7.2-9 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Visualize atomic structures
- v-sim-common (3.7.2-9)
- Visualize atomic structures (support files)
- v-sim-plugins (3.7.2-9 b2 [riscv64], 3.7.2-9 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Plugins for V_Sim (a 3D visualization package)
- varna (3-93 ds-7)
- Visualization Applet for RNA
- varscan (2.4.3 dfsg-4) [non-free]
- variant detection in next-generation sequencing data
- vcfanno (0.3.5 ds-2 b3 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 0.3.5 ds-2 [alpha, ppc64, sparc64, x32])
- annotate a VCF with other VCFs/BEDs/tabixed files
- vcfanno-examples (0.3.5 ds-2)
- examples for vcfanno: annotate a VCF with other VCFs/BEDs/tabixed files
- vcftools (0.1.16-3 b2 [arm64], 0.1.16-3 b1 [amd64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 0.1.16-3 [alpha, hppa, ia64, m68k, ppc64, sh4, sparc64, x32])
- Collection of tools to work with VCF files
- vdjtools (1.2.1 git20190311 repack-2) [non-free]
- framework for post-analysis of B/T cell repertoires
- velvet (1.2.10 dfsg1-9 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.2.10 dfsg1-8 [ia64])
- Nucleic acid sequence assembler for very short reads
- velvet-example (1.2.10 dfsg1-9)
- Example data for the Velvet sequence assembler
- velvet-long (1.2.10 dfsg1-9 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.2.10 dfsg1-8 [ia64])
- Nucleic acid sequence assembler for very short reads, long version
- velvet-tests (1.2.10 dfsg1-9)
- Test data for the Velvet sequence assembler
- velvetoptimiser (2.2.6-5)
- automatically optimise Velvet do novo assembly parameters
- veryfasttree (4.0.4 dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 4.0.3 dfsg-1 [ia64])
- Speeding up the estimation of phylogenetic trees from sequences
- veusz (3.6.2-1.1)
- 2D and 3D scientific plotting application with graphical interface
- veusz-helpers (1.21.1-1 b1) [debports]
- Architecture-specific helper module for Veusz
- vg (1.59.0 ds-0.1)
- tools for working with genome variation graphs
- vg-docs (1.59.0 ds-0.1)
- tools for working with genome variation graphs -- docs
- vienna-rna (2.6.4 dfsg-1 b1 [s390x], 2.6.4 dfsg-1 [amd64, arm64, armel, armhf, mips64el, ppc64el, riscv64]) [non-free]
- RNA sequence analysis
- virulencefinder (2.0.5-2)
- identify virulence genes in total or partial sequenced isolates of bacteria
- virulencefinder-examples (2.0.5-2)
- example data for virulencefinder
- visp-images-data (3.6.0-1)
- visual servoing library - dataset reference files
- vitables (3.0.2-4)
- graphical tool to browse and edit PyTables and HDF5 files
- vmatch (2.3.1 dfsg-9 b1 [arm64, riscv64], 2.3.1 dfsg-9 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, x32])
- large scale sequence analysis software
- voro (0.5 revert-to-0.4.6 dfsg1-1 b1 [arm64, riscv64], 0.5 revert-to-0.4.6 dfsg1-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- library for the computation of the Voronoi diagram
- voro -examples (0.5 revert-to-0.4.6 dfsg1-1)
- library for the computation of the Voronoi diagram (examples)
- voronota (1.22.3149-2 b1 [arm64, riscv64], 1.22.3149-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Voronoi diagram-based tool to find atom contacts
- votca (2024.2-1 b1 [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x], 2024.2-1 [sparc64])
- Molecular dynamics analysis - coarse-graining and charge transport
- votca-data (2024.2-1)
- VOTCA molecular dynamics analysis - basis sets and scripts
- votca-tutorials (2024.2-1)
- VOTCA molecular dynamics analysis - tutorials
- vsearch (2.29.1-1 b1 [amd64, arm64, mips64el, ppc64el, riscv64], 2.29.1-1 [alpha], 2.28.1-2 [x32])
- tool for processing metagenomic sequences
- vsearch-examples (2.29.1-1)
- Test Data for vsearch tool for processing metagenomic sequences
- vt (0.57721 ds-3 b2 [arm64, hppa, m68k, riscv64, sh4, sparc64], 0.57721 ds-3 b1 [alpha, amd64, armel, armhf, i386, ia64, mips64el, ppc64, ppc64el, s390x, x32])
- toolset for short variant discovery in genetic sequence data
- vt-examples (0.57721 ds-3)
- toolset for short variant discovery in genetic sequence data (examples)
- wannier90 (3.1.0 ds-10 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.1.0 ds-8 [ia64])
- Maximally Localized Wannier Functions - executables
- wannier90-data (3.1.0 ds-10)
- Maximally Localized Wannier Functions - documentation and examples
- wcslib-tools (8.4 ds-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 8.2.2 ds-3 b1 [ia64])
- Command line tools utilizing wcslib
- wcstools (3.9.7-1.1 b1 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.9.7-1.1 [alpha, ia64])
- Handle the WCS of a FITS image
- weightwatcher (1.12 dfsg-3 b1 [arm64, riscv64], 1.12 dfsg-3 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Combine maps and polygon data for astronomical image processing
- weka (3.6.14-4)
- Machine learning algorithms for data mining tasks
- wham-align (0.1.5-8 b1 [arm64, riscv64], 0.1.5-8 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, x32])
- Wisconsin's High-Throughput Alignment Method
- wigeon (20101212 dfsg1-6)
- reimplementation of the Pintail 16S DNA anomaly detection utility
- wise (2.4.1-25 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.4.1-24 [ia64])
- comparison of biopolymers, like DNA and protein sequences
- wsclean (3.4-3 b3 [sparc64], 3.4-3 b2 [amd64, arm64, armel, armhf, i386, m68k, ppc64, ppc64el, riscv64, s390x, x32], 3.4-3 b1 [alpha], 3.4-3 [sh4], 3.4-2 b1 [hppa], 3.4-1 b2 [ia64])
- Fast generic widefield interferometric imager
- wtdbg2 (2.5-10 [amd64], 2.5-8 [ia64])
- de novo sequence assembler for long noisy reads
- wtdbg2-examples (2.5-10)
- Examples for wtdbg - de novo sequence assembler
- wxastrocapture (1.8.1 git20140821.796e1a1 dfsg-2 b5 [mips64el], 1.8.1 git20140821.796e1a1 dfsg-2 b4 [amd64, arm64, armel, armhf, i386, ppc64, ppc64el, s390x, sh4], 1.8.1 git20140821.796e1a1 dfsg-2 b3 [riscv64], 1.8.1 git20140821.796e1a1 dfsg-2 b2 [x32], 1.8.1 git20140821.796e1a1 dfsg-2 [hppa, m68k])
- Windows linuX Astronomy Capture
- x13as (1.1-b61-1) [non-free]
- seasonal adjustment software for modeling time series
- xbs (0-12 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0-11 [ia64])
- 3-d models and movies of molecules
- xcas (1.9.0.93 dfsg2-3 [amd64, arm64, armel, armhf, i386, mips64el, riscv64], 1.6.0.25 dfsg1-2 b1 [m68k], 1.6.0.25 dfsg1-2 [alpha], 1.5.0.87 dfsg1-7 [ppc64, sparc64], 1.2.3.57 dfsg1-2 [sh4])
- Computer Algebra System - console and graphical calculator
- xcrysden (1.6.2-4 b1 [arm64, riscv64], 1.6.2-4 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Crystalline and Molecular Structure Visualizer
- xcrysden-data (1.6.2-4)
- Crystalline and Molecular Structure Visualizer (Data Files)
- xdrawchem (1:1.11.1-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 1:1.11.1-1 [m68k, x32], 1:1.11.0-4 b1 [ia64])
- Chemical structures and reactions editor
- xeus-python-dev (0.15.10 ~0.6.1-2 b3 [arm64], 0.15.10 ~0.6.1-2 b2 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.15.10 ~0.6.1-2 b1 [ia64])
- Native jupyter kernel for python (headers)
- xfoil (6.99.dfsg 1-3 b2 [arm64], 6.99.dfsg 1-3 b1 [amd64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x], 6.99.dfsg 1-3 [alpha, hppa, ia64, m68k, ppc64, sh4, sparc64, x32])
- program for the design and analysis of subsonic airfoils
- xgboost (2.0.3-1 b1 [ia64], 1.7.6-1 [riscv64]) [debports]
- Scalable and Flexible Gradient Boosting (Executable)
- xgterm (2.2~rc1 dfsg-5)
- Terminal emulator to work with IRAF
- ximtool (2.2~rc1 dfsg-5)
- Interactive image display program for the X Window System
- xmakemol (5.16-10 b2)
- program for visualizing atomic and molecular systems
- xmakemol-gl (5.16-10 b2)
- program for visualizing atomic and molecular systems (OpenGL)
- xmds2 (3.1.0 dfsg2-10)
- eXtensible Multi-Dimensional Simulator
- xmpsolve (3.2.1-10.1 b2 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, x32], 3.2.1-10.1 b1 [alpha, sh4, sparc64], 3.2.1-10.1 [ia64])
- Multiprecision polynomial solver (graphical version)
- xpa-tools (2.1.20-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.1.20-1 [ia64])
- Tools for seamless communication between Unix programs
- xplot (1.19-9.2 [amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.19-9.1 b1 [alpha, ia64])
- simple on-screen x-y column data plotter
- xplot-xplot.org (0.90.7.1-4 b1 [amd64, arm64, riscv64], 0.90.7.1-4 [alpha, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- fast tool to graph and visualize lots of data
- xpore (2.1-2)
- Nanopore analysis of differential RNA modifications
- xppaut (6.11b 1.dfsg-1.1 b1 [riscv64], 6.11b 1.dfsg-1.1 [alpha, amd64, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- Phase Plane Plus Auto: Solves many kinds of equations
- xpython (0.15.10 ~0.6.1-2 b3 [arm64], 0.15.10 ~0.6.1-2 b2 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.15.10 ~0.6.1-2 b1 [ia64])
- Native jupyter kernel for python (binary)
- xtb (6.7.0-1 b1 [arm64], 6.7.0-1 [amd64, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x])
- semiempirical extended tight-binding program package
- xtide (2.15.2-1.1) [debports]
- provides tide and current predictions
- xtpcpp (0.4.54-1) [debports]
- Transitional package from xtpcpp to i2masschroq
- xtpcpp-tools (0.4.54-1) [debports]
- Transitional package from xtpcpp-tools to i2masschroq-tools
- xyscan (4.66-1 b1 [arm64], 4.66-1 [alpha, amd64, armel, armhf, hppa, i386, mips64el, ppc64, ppc64el, riscv64, s390x, x32], 4.64-1 [ia64], 4.50-1 [m68k, sh4], 4.30-2 b3 [sparc64])
- data thief for scientists
- yade (2024.08a-4 b1 [amd64, arm64], 2018.02b-5 [ppc64], 2018.02b-1 [x32], 2018.02a-2 [hppa], 2017.01a-9 [sparc64], 1.00.0-2 [alpha])
- Platform for discrete element modeling
- yagv (0.4~20171211.r234ef16 dfsg-2)
- yet another G-code viewer
- yaha (0.1.83-3 b1 [arm64, riscv64], 0.1.83-3 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- find split-read mappings on single-end queries
- yale (5.0.95-3) [non-free]
- stellar data set from the Yale Bright Star Catalog
- yanagiba (1.0.0-5)
- filter low quality Oxford Nanopore reads basecalled with Albacore
- yanosim (0.1-6 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64el, riscv64, sh4, x32], 0.1-5 [ia64], 0.1-2 [hppa, ppc64, sparc64])
- read simulator nanopore DRS datasets
- yorick (2.2.04 dfsg1-14 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.2.04 dfsg1-12 b1 [ia64])
- interpreted language and scientific graphics
- yorick-av (0.0.6-1 b4 [ppc64, sparc64, x32], 0.0.6-1 b3 [alpha, amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64el, riscv64, s390x], 0.0.6-1 b2 [m68k, sh4], 0.0.6-1 [ia64])
- write movies from Yorick in various formats
- yorick-cubeview (2.2-2.2)
- 3D FITS data viewer specialized in spectro-imaging
- yorick-curses (0.1-7 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.1-6 b1 [ia64])
- interface to the (n)curses library for the Yorick language
- yorick-data (2.2.04 dfsg1-14)
- interpreted library for the Yorick language
- yorick-dev (2.2.04 dfsg1-14 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 2.2.04 dfsg1-12 b1 [ia64])
- development files for the Yorick interpreted language
- yorick-full (2.2.04 dfsg1 full b1 [amd64, riscv64], 2.2.04 dfsg1 full [alpha, arm64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- full installation of the Yorick interpreter and add-ons
- yorick-gl (1.1 cvs20070922 dfsg-7 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.1 cvs20070922 dfsg-6.1 [ia64])
- OpenGL 3D graphics support for the Yorick language
- yorick-gy (0.0.5-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.0.5-2 b1 [ia64])
- GObject introspection and Gtk bindings for Yorick
- yorick-gyoto (2.0.2-5 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64], 2.0.2-1.1 [ia64], 1.4.4-8 b4 [sh4], 1.2.0-4 b5 [x32])
- General relativistic geodesic integration for the Yorick language
- yorick-hdf5 (0.8.0-9 b1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 0.8.0-9 [alpha, hppa, m68k, sh4], 0.8.0-8 b3 [ia64])
- Hierarchical Data Format 5 interface for the Yorick language
- yorick-imutil (0.5.7-4 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.5.7-3 [ia64])
- fast image manipulation routines for the Yorick language
- yorick-mira (1.1.0 git20170124.3bd1c3~dfsg1-2)
- optical interferometry image reconstruction within Yorick
- yorick-ml4 (0.6.0-6 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 0.6.0-4 [ia64])
- Matlab file format support for the Yorick language
- yorick-mpeg (0.1-4 b1 [arm64, riscv64], 0.1-4 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- MPEG output support for the Yorick language
- yorick-mpy-common (2.2.04 dfsg1-13)
- Message Passing Yorick (common files)
- yorick-optimpack (1.3.2 dfsg 1.4.0-1 b1 [arm64, riscv64], 1.3.2 dfsg 1.4.0-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- optimization of large scale problems for the Yorick language
- yorick-soy (1.4.0-3 b2 [arm64], 1.4.0-3 b1 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.4.0-3 [ia64])
- sparse matrix operations for the Yorick language
- yorick-svipc (0.16-7 b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 0.16-7 [x32], 0.16-5 b8 [ia64])
- interprocess communication (shared memory...) for Yorick
- yorick-yeti (6.4.0-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 6.4.0-1.1 b1 [ia64])
- utility plugin for the Yorick language
- yorick-yeti-fftw (6.4.0-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 6.4.0-1.1 b1 [ia64])
- FFT plugin for the Yorick language
- yorick-yeti-regex (6.4.0-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 6.4.0-1.1 b1 [ia64])
- POSIX regular expressions for the Yorick language
- yorick-yeti-tiff (6.4.0-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 6.4.0-1.1 b1 [ia64])
- TIFF image format input for the Yorick language
- yorick-ygsl (1.2.1-1 b6 [mips64el], 1.2.1-1 b4 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, ppc64, ppc64el, s390x, sparc64, x32], 1.2.1-1 b3 [riscv64, sh4], 1.2.1-1 b2 [ia64])
- GSL special functions plugin for the Yorick language
- yorick-ynfft (1.0.4-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 1.0.3-1 [ia64])
- nonequispaced fast Fourier transform for Yorick
- yorick-yutils (1.5.2-2)
- various utilities for the Yorick language
- yorick-z (1.2.0 cvs20080115-5.1 b2 [arm64, mips64el, riscv64], 1.2.0 cvs20080115-5.1 b1 [alpha, amd64, armel, armhf, hppa, i386, ia64, m68k, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- zlib, jpeg and png support for the Yorick language
- z3 (4.13.3-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sparc64, x32], 4.8.12-3.1 [ia64])
- theorem prover from Microsoft Research
- z88 (15 dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 13.0.0 dfsg2-6 b1 [ia64])
- Finite Element Analysis Program - runtime
- z88-data (15 dfsg-1)
- Finite Element Analysis Program - data
- zegrapher (3.1.1-4 b2 [arm64, riscv64], 3.1.1-4 b1 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sh4, sparc64, x32])
- plotting mathematical functions and sequences on the plane
- zfp (1.0.1-4 b3 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64], 1.0.1-4 b1 [x32], 1.0.1-3.1 [ia64])
- Fixed-Rate Compressed Floating-Point Arrays - binary programs
- ztex-bmp (20120314-2 b1 [amd64, arm64, armel, armhf, i386, ppc64], 20120314-2 [m68k, ppc64el, sparc64])
- universal macro processor
