Пакунок: ea-utils (1.1.2 dfsg-9 and others)

Links for ea-utils

Debian Resources:

Download Source Package ea-utils:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Tim Booth (QA Page)
Andreas Tille (QA Page)

External Resources:

Homepage [expressionanalysis.github.io]

Similar packages:

command-line tools for processing biological sequencing data

Ea-utils provides a set of command-line tools for processing biological sequencing data, barcode demultiplexing, adapter trimming, etc.

Primarily written to support an Illumina based pipeline - but should work with any FASTQs.

Main Tools are:

 * fastq-mcf

Scans a sequence file for adapters, and, based on a log-scaled threshold, determines a set of clipping parameters and performs clipping. Also does skewing detection and quality filtering.

 * fastq-multx

Demultiplexes a fastq. Capable of auto-determining barcode id's based on a master set fields. Keeps multiple reads in-sync during demultiplexing. Can verify that the reads are in-sync as well, and fail if they're not.

 * fastq-join

Similar to audy's stitch program, but in C, more efficient and supports some automatic benchmarking and tuning. It uses the same "squared distance for anchored alignment" as other tools.

 * varcall

Takes a pileup and calculates variants in a more easily parameterized manner than some other tools.

Інші пакунки пов'язані з ea-utils

depends

recommends

suggests

enhances

dep: libc6 (>= 2.38)

Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
dep: libgcc-s1 (>= 3.0) [not armel, armhf, i386, riscv64]

Допоміжна бібліотека GCC

dep: libgcc-s1 (>= 3.4) [riscv64]

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [i386]
dep: libgsl28 (>= 2.8 dfsg)

GNU Scientific Library (GSL) -- library package
dep: libstdc 6 (>= 13.1)

Стандартна бібліотека C GNU, версії 3
dep: r-base-core

GNU R core of statistical computation and graphics system
dep: r-cran-formula

GNU R package for extended model formulas
dep: r-cran-getopt

GNU R package providing command-line parsing functionality
dep: r-cran-ggplot2

implementation of the Grammar of Graphics
dep: r-cran-hmisc

GNU R miscellaneous functions by Frank Harrell
dep: r-cran-lattice

GNU R package for 'Trellis' graphics
dep: r-cran-survival

GNU R package for survival analysis
dep: zlib1g (>= 1:1.2.3.3)

Бібліотека стискання даних (виконавчий модуль)

rec: med-config (>= 2.1)

Debian Med general config package

Завантажити ea-utils

Завантаження для всіх доступних архітектур
Архітектура	Версія	Розмір пакунка	Розмір після встановлення	Файли
amd64	1.1.2 dfsg-9 b3	239.9 kB	762.0 kB	[список файлів]
arm64	1.1.2 dfsg-9 b3	215.3 kB	1,002.0 kB	[список файлів]
armel	1.1.2 dfsg-9 b3	213.0 kB	699.0 kB	[список файлів]
armhf	1.1.2 dfsg-9 b3	210.8 kB	547.0 kB	[список файлів]
i386	1.1.2 dfsg-9 b3	250.4 kB	779.0 kB	[список файлів]
mips64el	1.1.2 dfsg-9 b3	232.0 kB	1,093.0 kB	[список файлів]
ppc64el	1.1.2 dfsg-9 b3	243.5 kB	1,066.0 kB	[список файлів]
riscv64	1.1.2 dfsg-9 b2	234.3 kB	638.0 kB	[список файлів]
s390x	1.1.2 dfsg-9 b3	234.9 kB	786.0 kB	[список файлів]