Пакунок: libjellyfish-perl (2.3.1-4)
Links for libjellyfish-perl
Debian Resources:
Download Source Package jellyfish:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Shaun Jackman (QA Page)
- Andreas Tille (QA Page)
- Michael R. Crusoe (QA Page)
- Étienne Mollier (QA Page)
External Resources:
- Homepage [www.genome.umd.edu]
Similar packages:
count k-mers in DNA sequences (Perl bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains the Perl bindings of jellyfish.
Інші пакунки пов'язані з libjellyfish-perl
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- dep: libc6 (>= 2.38)
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- Допоміжна бібліотека GCC
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- dep: perl (>= 5.40.0-8)
- Мова Практичного Видобування та Побудування Звітів Лари Уолла (Larry Wall)
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- dep: perlapi-5.40.0
- virtual package provided by perl-base
Завантажити libjellyfish-perl
| Архітектура | Розмір пакунка | Розмір після встановлення | Файли |
|---|---|---|---|
| amd64 | 55.4 kB | 176.0 kB | [список файлів] |