Software Packages in "buster", Subsection science

3depict (0.0.21-1)

Візуалізація та аналіз точкових даних з вагами

abacas (1.3.1-5)

close gaps in genomic alignments from short reads

abinit (8.8.4-2)

package for electronic structure calculations

abyss (2.1.5-7)

de novo, parallel, sequence assembler for short reads

acedb-other (4.9.39 dfsg.02-4)

retrieval of DNA or protein sequences

acedb-other-belvu (4.9.39 dfsg.02-4)

transitional package for belvu

acedb-other-belvu

virtual package provided by belvu

acedb-other-dotter (4.9.39 dfsg.02-4)

transitional package for dotter

acedb-other-dotter

virtual package provided by dotter

aces3 (3.0.8-6)

Advanced Concepts in Electronic Structure III

aces3-data (3.0.8-6)

Advanced Concepts in Electronic Structure III

achilles (2-9)

Artificial life and evolution simulator

adapterremoval (2.2.3-1)

rapid adapter trimming, identification, and read merging of gene sequences

adapterremoval-examples (2.2.3-1)

rapid adapter trimming, identification, and read merging (example data)

adms (2.3.6-2)

Automatic device model synthesizer for Verilog-AMS

adun-core (0.81-13)

Molecular Simulator

aegean (0.16.0 dfsg-1)

integrated genome analysis toolkit

aeskulap (0.2.2-beta2 git20180219.8787e95-2)

Перегляд медичних зображень та клієнт мереж DICOM

aevol (5.0-2 b1)

digital genetics model to run Evolution Experiments in silico

aghermann (1.1.2-2)

Sleep-research experiment manager

aladin (10.076 dfsg-1)

Interactive sky atlas for astronomical images and datasets

alfa (1.0-3 b1)

Automated Line Fitting Algorithm

alien-hunter (1.7-7)

Interpolated Variable Order Motifs to identify horizontally acquired DNA

altree (1.3.1-7 b1)

program to perform phylogeny-based association and localization analysis

altree-examples (1.3.1-7)

example files for ALTree

amap-align (2.2 git20080214.600fc29 dfsg-1)

Protein multiple alignment by sequence annealing

ampliconnoise (1.29-8)

removal of noise from 454 sequenced PCR amplicons

andi (0.12-4)

Efficient Estimation of Evolutionary Distances

anfo (0.98-7)

Short Read Aligner/Mapper from MPG

aoflagger (2.13.0-1 b2)

Find RFI in radio astronomical observations

apbs (1.4-1 b1)

Adaptive Poisson Boltzmann Solver

apertium-af-nl (0.2.0~r58256-2)

Apertium translation data for the Afrikaans-Dutch pair

apertium-all-dev (3.5.2-1)

Metapackage for all tools required for Apertium development

apertium-apy (0.11.4-2)

Apertium APY service

apertium-arg (0.1.2~r65494-2)

Apertium single language data for Aragonese

apertium-arg-cat (0.1.0~r64925-2)

Apertium translation data for the Aragonese-Catalan pair

apertium-bel (0.1.0~r81357-2)

Apertium single language data for Belarusian

apertium-bel-rus (0.2.0~r81186-2)

Дані перекладу Apertium для білорусько-москальської пари

apertium-br-fr (0.5.0~r61325-3)

Apertium linguistic data to translate between Breton and French

apertium-ca-it (0.1.1~r57554-2)

Дані перекладу Apertium для каталонсько-італійської пари

apertium-cat (2.6.0-1)

Apertium single language data for Catalan

apertium-cat-srd (1.0.0~r82995-2)

Apertium translation data for the Catalan-Sardinian pair

apertium-crh (0.2.0~r83161-2)

Apertium single language data for Crimean Tatar

apertium-crh-tur (0.3.0~r83159-2)

Apertium translation data for the Crimean Tatar-Turkish pair

apertium-cy-en (0.1.1~r57554-4)

Apertium translation data for the Welsh-English pair

apertium-dan (0.5.0~r67099-2)

Apertium single language data for Danish

apertium-dan-nor (1.3.0~r67099-2)

Apertium translation data for the Danish-Norwegian pair

apertium-dev (3.5.2-1)

Development tools and library for Apertium

apertium-en-gl (0.5.2~r57551-2)

Apertium translation data for the English-Galician pair

apertium-eo-en (1.0.0~r63833-2)

Apertium linguistic data to translate between Esperanto and English

apertium-eo-fr (0.9.0~r57551-2)

Дані перекладу Apertium для есперанто-французької пари

apertium-es-ast (1.1.0~r51165-2)

Apertium translation data for the Spanish-Asturian pair

apertium-es-it (0.2.0~r78826-2)

Transitional dummy package for apertium-spa-ita

apertium-eu-en (0.3.1~r56205-2)

Дані перекладу Apertium для басксько-англійської пари

apertium-fra (1.5.0-1)

Apertium single language data for French

apertium-fra-cat (1.5.0-1)

Apertium translation data for the French-Catalan pair

apertium-hbs (0.5.0~r68212-3)

Apertium single language data for Serbo-Croatian

apertium-hbs-eng (0.1.0~r57598-2)

Apertium translation data for the Serbo-Croatian - English pair

apertium-hbs-mkd (0.1.0~r76450-2.1)

Apertium translation data for the Serbo-Croatian-Macedonian pair

apertium-hbs-slv (0.1.0~r59294-2)

Apertium translation data for the Serbo-Croatian-Slovenian pair

apertium-hin (0.1.0~r59158-2)

Apertium single language data for Hindi

apertium-id-ms (0.1.1~r57551-2)

Дані перекладу Apertium для індонезійсько-малайської пари

apertium-is-sv (0.1.0~r76450-2)

Apertium translation data for the Icelandic-Swedish pair

apertium-isl (0.1.0~r65494-2)

Apertium single language data for Icelandic

apertium-isl-eng (0.1.0~r66083-2)

Apertium translation data for the Icelandic-English pair

apertium-ita (0.10.0~r82237-2)

Apertium single language data for Italian

apertium-kaz (0.1.0~r61338-2)

Apertium single language data for Kazakh

apertium-kaz-tat (0.2.1~r57554-2)

Apertium translation data for the Kazakh-Tatar pair

apertium-lex-tools (0.2.1-1)

Constraint-based lexical selection module

apertium-mk-bg (0.2.0~r49489-2)

Apertium translation data for the Macedonian-Bulgarian pair

apertium-mk-en (0.1.1~r57554-2)

Apertium translation data for the Macedonian-English pair

apertium-mlt-ara (0.2.0~r62623-2)

Apertium translation data for the Maltese-Arabic pair

apertium-nno (0.9.0~r69513-3)

Apertium single language data for Norwegian Nynorsk

apertium-nno-nob (1.1.0~r66076-2)

Apertium translation data for the Norwegian Nynorsk-Norwegian Bokmål pair

apertium-nob (0.9.0~r69513-2)

Apertium single language data for Norwegian Bokmål

apertium-oci (0.1.0-1)

Apertium single language data for Occitan

apertium-pol (0.1.1-1)

Apertium single language data for Polish

apertium-rus (0.2.0~r82706-1)

Apertium single language data for Russian

apertium-separable (0.3.2-1)

Reordering separable/discontiguous multiwords

apertium-sme-nob (0.6.0~r61921-2)

Apertium translation data for the Northern Sami-Norwegian Bokmål pair

apertium-spa (1.1.0~r79716-2)

Apertium single language data for Spanish

apertium-spa-arg (0.4.0~r64399-2)

Дані перекладу Apertium для іспансько-арагонської пари

apertium-spa-cat (2.1.0~r79717-2)

Apertium translation data for the Spanish-Catalan pair

apertium-spa-ita (0.2.0~r78826-2)

Apertium translation data for the Spanish-Italian pair

apertium-srd (1.2.0~r82994-2)

Apertium single language data for Sardinian

apertium-srd-ita (0.9.5~r82237-2)

Apertium translation data for the Sardinian-Italian pair

apertium-swe (0.7.0~r69513-2)

Apertium single language data for Swedish

apertium-swe-dan (0.7.0~r66063-2)

Дані перекладу Apertium для шведсько-данської пари

apertium-swe-nor (0.2.0~r69544-2)

Apertium translation data for the Swedish-Norwegian pair

apertium-szl (0.1.0-1)

Apertium single language data for Silesian

apertium-tat (0.1.0~r60887-2)

Apertium single language data for Tatar

apertium-tur (0.2.0~r83161-2)

Apertium single language data for Turkish

apertium-ukr (0.1.0~r82563-2)

Apertium single language data for Ukrainian

apertium-urd (0.1.0~r61311-2)

Дані одної мови Apertium для Урду

apertium-urd-hin (0.1.0~r64379-2)

Apertium translation data for the Urdu-Hindi pair

aragorn (1.2.38-2)

tRNA and tmRNA detection in nucleotide sequences

arb (6.0.6-4) [non-free]

phylogenetic sequence analysis suite - main program

arb-common (6.0.6-4) [non-free]

phylogenetic sequence analysis suite - common files

arden (1.0-4)

specificity control for read alignments using an artificial reference

ariba (2.13.3 ds-1)

Antibiotic Resistance Identification By Assembly

art-nextgen-simulation-tools (20160605 dfsg-3)

simulation tools to generate synthetic next-generation sequencing reads

art-nextgen-simulation-tools-profiles (20160605 dfsg-3)

profiles for art simulation tools

artemis (17.0.1 dfsg-2)

genome browser and annotation tool

artfastqgenerator (0.0.20150519-3)

outputs artificial FASTQ files derived from a reference genome

artfastqgenerator-examples (0.0.20150519-3)

ou7puts artificial FASTQ files derived from a reference genome (examples)

asdftool (2.3.2-2)

Command line tool to manipulate ASDF scientific data files

ase (3.17.0-2)

Atomic Simulation Environment

ask (1.1.1-3)

Adaptive Sampling Kit for big experimental spaces

assemblytics (1.0 ds-1)

detect and analyze structural variants from a genome assembly

astro-tasks (2.0)

Debian Astronomy Pure Blend (tasksel tasks)

astromatic (1.1)

Astronomical pipeline software collection

astrometry-data-2mass (1.1) [contrib]

Astrometry.net 2MASS index files downloader

astrometry-data-2mass-00 (1.1) [contrib]

Astrometry.net 2MASS index files downloader (2'-2.8')

astrometry-data-2mass-01 (1.1) [contrib]

Astrometry.net 2MASS index files downloader (2.8'-4')

astrometry-data-2mass-02 (1.1) [contrib]

Astrometry.net 2MASS index files downloader (4'-5.6')

astrometry-data-2mass-03 (1.1) [contrib]

Astrometry.net 2MASS index files downloader (5.6'-8')

astrometry-data-2mass-04 (1.1) [contrib]

Astrometry.net 2MASS index files downloader (8'-11')

astrometry-data-2mass-05 (1.1) [contrib]

Astrometry.net 2MASS index files downloader (11'-16')

astrometry-data-2mass-06 (1.1) [contrib]

Astrometry.net 2MASS index files downloader (16'-22')

astrometry-data-2mass-07 (1.1) [contrib]

Astrometry.net 2MASS index files downloader (22'-30')

astrometry-data-2mass-08-19 (1.1) [contrib]

Astrometry.net 2MASS index files downloader (30'-2000')

astrometry-data-tycho2 (2-4)

Astrometry.net Tycho-2 index files

astrometry-data-tycho2-07 (2-4)

Astrometry.net Tycho-2 index files (22'-30')

astrometry-data-tycho2-07-bigendian (2-4)

Astrometry.net Tycho-2 big endian index files (22'-30')

astrometry-data-tycho2-07-littleendian (2-4)

Astrometry.net Tycho-2 little endian index files (22'-30')

astrometry-data-tycho2-08 (2-4)

Astrometry.net Tycho-2 index files (30'-44')

astrometry-data-tycho2-08-bigendian (2-4)

Astrometry.net Tycho-2 big endian index files (30'-44')

astrometry-data-tycho2-08-littleendian (2-4)

Astrometry.net Tycho-2 little endian index files (30'-44')

astrometry-data-tycho2-09 (2-4)

Astrometry.net Tycho-2 index files (44'-60')

astrometry-data-tycho2-09-bigendian (2-4)

Astrometry.net Tycho-2 big endian index files (44'-60')

astrometry-data-tycho2-09-littleendian (2-4)

Astrometry.net Tycho-2 little endian index files (44'-60')

astrometry-data-tycho2-10-19 (2-4)

Astrometry.net Tycho-2 index files (60'-2000')

astrometry-data-tycho2-10-19-bigendian (2-4)

Astrometry.net Tycho-2 big endian index files (60'-2000')

astrometry-data-tycho2-10-19-littleendian (2-4)

Astrometry.net Tycho-2 little endian index files (60'-2000')

astrometry.net (0.76 dfsg-3)

Astrometry plate solver

astronomical-almanac (5.6-6)

Астрономічний альманах - обрахунок позицій планет та зірок

astropy-utils (3.1.2-2)

Command line tools from astropy

atac (0~20150903 r2013-6)

genome assembly-to-assembly comparison

augustus (3.3.2 dfsg-2)

gene prediction in eukaryotic genomes

augustus-data (3.3.2 dfsg-2)

data files for AUGUSTUS

autodock (4.2.6-6)

analysis of ligand binding to protein structure

autodock-getdata (4.2.6-6)

instructions for getData to collect compounds

autodock-test (4.2.6-6)

test files for AutoDock

autodock-vina (1.1.2-5 b1)

docking of small molecules to proteins

autogrid (4.2.6-6)

pre-calculate binding of ligands to their receptor

autogrid-test (4.2.6-6)

test files for AutoGrid

avce00 (2.0.0-7)

Conversion of ESRI Arcinfo Vector Coverage in E00 format

avogadro (1.2.0-4 b2)

Molecular Graphics and Modelling System

avogadro-data (1.2.0-4)

Molecular Graphics and Modelling System (Data Files)

axe-demultiplexer (0.3.3 dfsg-1)

Trie-based DNA sequencing read demultiplexer

bagel (1.2.2-1)

Computational Chemistry Package

baitfisher (1.2.7 git20180107.e92dbf2 dfsg-1)

software package for designing hybrid enrichment probes

bali-phy (3.4 dfsg-1)

Bayesian Inference of Alignment and Phylogeny

ballview (1.5.0 git20180813.37fc53c-3)

Вільний інструмент для молекулярного моделювання та молекулярної графіки

bamtools (2.5.1 dfsg-3)

toolkit for manipulating BAM (genome alignment) files

bandage (0.8.1-1)

Bioinformatics Application for Navigating De novo Assembly Graphs Easily

barrnap (0.9 dfsg-1)

rapid ribosomal RNA prediction

bart (0.4.04-2)

tools for computational magnetic resonance imaging

bart-view (0.1.00-2)

viewer for multi-dimensional complex-valued data

bcbio (1.1.2-3)

toolkit for analysing high-throughput sequencing data

bcbio-doc (1.1.2-3)

Documentation for RNAseq-workflows of bcbio(-nextgen)

bcftools (1.9-1)

genomic variant calling and manipulation of VCF/BCF files

beads (1.1.18 dfsg-3 b1)

2-DE electrophoresis gel image spot detection

beagle (5.0-180928 dfsg-1 deb10u1)

Genotype calling, genotype phasing and imputation of ungenotyped markers

beast-mcmc (1.10.4 dfsg-1)

Bayesian MCMC phylogenetic inference

beast2-mcmc (2.5.1 dfsg-2)

Bayesian MCMC phylogenetic inference

bedops (2.4.35 dfsg-1)

high-performance genomic feature operations

bedtools (2.27.1 dfsg-4)

suite of utilities for comparing genomic features

bedtools-test (2.27.1 dfsg-4)

test data for the bedtools package

belvu (4.44.1 dfsg-3)

multiple sequence alignment viewer and phylogenetic tool

berkeley-express (1.5.2 dfsg-1 b2)

Streaming quantification for high-throughput sequencing

bibus (1.5.2 dfsg-1)

Бібліографічна база даних

bio-eagle (2.4.1-1)

Haplotype phasing within a genotyped cohort or using a phased reference panel

bio-eagle-examples (2.4.1-1)

Examples for bio-eagle

bio-rainbow (2.0.4 dfsg-1)

clustering and assembling short reads for bioinformatics

biogenesis (0.8-3)

artificial life program that simulates evolution of organisms

bioperl (1.7.2-3)

Perl tools for computational molecular biology

bioperl-run (1.7.2-4)

BioPerl wrappers: scripts

biosig-tools (1.9.3-2)

format conversion tools for biomedical data formats

biosquid (1.9g cvs20050121-11)

utilities for biological sequence analysis

biosyntax (1.0.0b-1)

Syntax Highlighting for Computational Biology (metapackage)

biosyntax-common (1.0.0b-1)

Syntax Highlighting for Computational Biology (common files)

biosyntax-example (1.0.0b-1)

Syntax Highlighting for Computational Biology (example)

biosyntax-gedit (1.0.0b-1)

Syntax Highlighting for Computational Biology (gedit)

biosyntax-less (1.0.0b-1)

Syntax Highlighting for Computational Biology (less)

biosyntax-vim (1.0.0b-1)

Syntax Highlighting for Computational Biology (vim)

bist (0.5.2-1.1 b3)

Інструмент для малювання хімічних сполук

bitseq (0.7.5 dfsg-4)

Bayesian Inference of Transcripts from Sequencing Data

bkchem (0.13.0-6)

Редактор хімічних структур

blasr (5.3.2 dfsg-1.1)

mapping single-molecule sequencing reads

blast2 (1:2.8.1-1 deb10u1)

transitional dummy package to ncbi-blast -legacy

blimps-utils (3.9 ds-1) [non-free]

blocks database improved searcher

blixem (4.44.1 dfsg-3)

interactive browser of sequence alignments

bmt (0.6-1)

software analysis benchmarking toolkit

bodr (10-1)

Сховище даних „Голубий обеліск“

boinc-app-seti (8.00~svn3725-3)

SETI@home application for the BOINC client

boinc-app-seti-graphics (8.00~svn3725-3)

SETI@home application for the BOINC client (with graphics)

bolt-lmm (2.3.2 dfsg-3 b1)

Efficient large cohorts genome-wide Bayesian mixed-model association testing

bolt-lmm-example (2.3.2 dfsg-3)

Examples for bolt-lmm

boolector (1.5.118.6b56be4.121013-1 b1)

SMT solver for bit-vectors and arrays

bowtie (1.2.2 dfsg-4)

Ultrafast memory-efficient short read aligner

bowtie-examples (1.2.2 dfsg-4)

Examples for bowtie, the ultrafast memory-efficient short read aligner

bowtie2 (2.3.4.3-1)

ultrafast memory-efficient short read aligner

bowtie2-examples (2.3.4.3-1)

Examples for bowtie2

boxshade (3.3.1-12)

Красиві роздруківки декількох угрупувань послідовностей

bppphyview (0.6.1-1)

Bio Phylogenetic Viewer

bppsuite (2.4.1-1)

Bio program suite

bppsuite-examples (2.4.1-1)

Examples for Bio program suite

brig (0.95 dfsg-2)

BLAST Ring Image Generator

bwa (0.7.17-3)

Burrows-Wheeler Aligner

cafeobj (1.5.9-1)

new generation algebraic specification and programming language

cafeobj-mode (1.5.9-1)

Emacs major mode for editing CafeOBJ source code

caffe-cpu (1.0.0 git20180821.99bd997-2 b1)

Fast, open framework for Deep Learning (Meta)

caffe-tools-cpu (1.0.0 git20180821.99bd997-2 b1)

Tools for fast, open framework for Deep Learning (CPU_ONLY)

caffe-tools-cuda (1.0.0 git20180821.99bd997-2 b1) [contrib]

Tools for fast, open framework for Deep Learning (CUDA)

cain (1.10 dfsg-3)

simulations of chemical reactions

cain-examples (1.10 dfsg-3)

examples for cain

cain-solvers (1.10 dfsg-3)

solvers for cain

calculix-ccx (2.11-1 b3)

Three-Dimensional Structural Finite Element Program

calculix-cgx (2.11 dfsg-1 b1)

Calculix cgx is a 3-dimensional pre- and post-processor for fem

camitk-actionstatemachine (4.1.2-3)

pipeline replay application for the CamiTK library

camitk-config (4.1.2-3)

Computer Assisted Medical Intervention Tool Kit - config

camitk-imp (4.1.2-3)

workbench application for the CamiTK library

canu (1.8 dfsg-2)

single molecule sequence assembler for genomes

casacore-data-igrf (12-1)

International Geomagnetic Reference Field data for casacore

casacore-data-jpl-de200 (2007.07.05 ds.1-0 deb10u1)

Jet Propulsion Laboratory Development Ephemeris DE200 for casacore

casacore-data-jpl-de405 (2007.07.05 ds.1-0 deb10u1)

Jet Propulsion Laboratory Development Ephemeris DE405 for casacore

casacore-data-lines (0 git2016.11.26-2)

Table of spectral line frequencies for casacore

casacore-data-observatories (0 git2018.12.08-1)

Table of radio observatory coordinates for casacore

casacore-data-sources (2-2)

Table of ICRF reference source coordinates for casacore

casacore-data-tai-utc (1.2)

Difference table between TAI and UTC for casacore

casacore-tools (3.0.0-4)

Tools built with CASA

cassbeam (1.1-1 b1)

Cassegrain antenna modelling

cassiopee (1.0.9-2)

index and search tool in genomic sequences

cba (0.3.6-4.1 b2)

Continuous Beam Analysis

cbflib-bin (0.9.5.18 dfsg1-1 b1)

utilities to manipulate CBF files

cbmc (5.10-5)

bounded model checker for C and C programs

cclib (1.6-1)

Parsers and algorithms for computational chemistry

cclib-data (1.1-1) [non-free]

Parsers and algorithms for computational chemistry (data files)

cct (20170919 dfsg-1)

visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences

cct-examples (20170919 dfsg-1)

example data for testing the package cct

cd-hit (4.6.8-2)

suite of programs designed to quickly group sequences

cdbfasta (0.99-20100722-5)

Constant DataBase indexing and retrieval tools for multi-FASTA files

centrifuge (1.0.3-2)

rapid and memory-efficient system for classification of DNA sequences

cernlib (20061220 dfsg3-4.4)

CERNLIB data analysis suite - general use metapackage

cernlib-core (20061220 dfsg3-4.4)

CERNLIB data analysis suite - main libraries and programs

cernlib-extras (20061220 dfsg3-4.4)

CERNLIB data analysis suite - extra programs

cernlib-montecarlo (20061220 dfsg3-3.1)

CERNLIB Monte Carlo libraries

cg3 (1.1.7-1 b1)

Tools for using the 3rd edition of Constraint Grammar (CG-3)

cgns-convert (3.3.0-7~deb10u1)

CFD General Notation System - Conversion tools

cgview (0.0.20100111-4)

Circular Genome Viewer

ch5m3d (1.2.5 dfsg-2)

create and visualize 3-dimensional drawings of simple molecules

changeo (0.4.5-1)

Repertoire clonal assignment toolkit (Python 3)

checkit-tiff (0.2.3-2)

conformance checker for baseline TIFFs

chemical-structures (2.2.dfsg.0-13)

set of molecular structures in open formats

chemps2 (1.8.9-1 b2)

Executable to call libchemps2-3 from the command line

chemtool (1.6.14-3)

chemical structures drawing program

chimeraslayer (20101212 dfsg1-2)

detects likely chimeras in PCR amplified DNA

chromhmm (1.18 dfsg-1)

Chromatin state discovery and characterization

chromimpute (1.0.3 dfsg-1)

Large-scale systematic epigenome imputation

circlator (1.5.5-3)

circularize genome assemblies

circos (0.69.6 dfsg-2)

Графобудівник для візуалізації даних

circos-tools (0.23-1)

plotter for visualizing data - helper utilities

ckon (0.7.1-3 b5)

automatic build tool for ROOT data analysis software

clearcut (1.0.9-3)

extremely efficient phylogenetic tree reconstruction

clonalframe (1.2-9)

inference of bacterial microevolution using multilocus sequence data

clonalframeml (1.11-3)

Efficient Inference of Recombination in Whole Bacterial Genomes

clonalorigin (1.0-3)

inference of homologous recombination in bacteria using whole genome sequences

clustalo (1.2.4-2)

General purpose multiple sequence alignment program for proteins

clustalw (2.1 lgpl-6)

global multiple nucleotide or peptide sequence alignment

clustalx (2.1 lgpl-8)

Multiple alignment of nucleic acid and protein sequences (graphical interface)

cluster3 (1.57-1) [non-free]

Reimplementation of the Eisen-clustering software

cmor-tables (3.3-1)

MIP tables for the Climate Model Output Rewriter library

cmtk (3.3.1p1 dfsg-1)

Computational Morphometry Toolkit

cnvkit (0.9.5-3)

Copy number variant detection from targeted DNA sequencing

cod-tools (2.3 dfsg-3)

tools for manipulating CIF format files

code-aster-gui (1.13.1-2.1)

Graphical user interface for Code_Aster - client

code-aster-run (1.13.1-2.1)

Graphical user interface for Code_Aster - server

code-saturne (5.3.2 repack-1)

General purpose Computational Fluid Dynamics (CFD) software

code-saturne-bin (5.3.2 repack-1)

General purpose Computational Fluid Dynamics (CFD) software - binaries

code-saturne-data (5.3.2 repack-1)

General purpose Computational Fluid Dynamics (CFD) software - data

code-saturne-doc (5.3.2 repack-1)

General purpose Computational Fluid Dynamics (CFD) software - Documentation

code-saturne-include (5.3.2 repack-1)

General purpose Computational Fluid Dynamics (CFD) software - includes

codonw (1.4.4-4)

Correspondence Analysis of Codon Usage

coinor-cbc (2.9.9 repack1-1)

Coin-or branch-and-cut mixed integer programming solver

coinor-clp (1.16.11 repack1-1)

Coin-or linear programming solver

coinor-csdp (6.1.1-1 b2)

A software package for semidefinite programming

coinor-libcbc3 (2.9.9 repack1-1)

Coin-or branch-and-cut mixed integer programming solver (shared libraries)

coinor-libcgl1 (0.59.10 repack1-1)

COIN-OR Cut Generation Library

coinor-libclp1 (1.16.11 repack1-1)

Coin-or linear programming solver (shared libraries)

coinor-libcoinutils3v5 (2.10.14 repack1-1)

Coin-or collection of utility classes (binaries and libraries)

coinor-libosi1v5 (0.107.9 repack1-1)

COIN-OR Open Solver Interface

coinor-libsymphony3 (5.6.16 repack1-1.1)

COIN-OR solver for mixed-integer linear programs (shared libraries)

coinor-symphony (5.6.16 repack1-1.1)

COIN-OR solver for mixed-integer linear programs

colmap (3.5-1 b1)

Structure-from-Motion and Multi-View Stereo

comet-ms (2018012-1)

Tandem mass spectrometry (MS/MS) search engine

concavity (0.1 dfsg.1-4)

predictor of protein ligand binding sites from structure and conservation

connectome-workbench (1.3.2-1)

brain visualization, analysis and discovery tool

conservation-code (20110309.0-7)

protein sequence conservation scoring tool

cp2k (6.1-2)

Ab Initio Molecular Dynamics

cp2k-data (6.1-2)

Ab Initio Molecular Dynamics (data files)

cpl-plugin-amber (4.3.8 dfsg-1 b1)

ESO data reduction pipeline for the AMBER instrument

cpl-plugin-amber-calib (4.3.8 dfsg-1) [contrib]

ESO data reduction pipeline calibration data downloader for AMBER

cpl-plugin-fors (5.3.32 dfsg-1)

ESO data reduction pipeline for the FORS1/2 instruments

cpl-plugin-fors-calib (5.3.32 dfsg-1) [contrib]

ESO data reduction pipeline calibration data downloader for FORS2

cpl-plugin-giraf (2.16.3 dfsg-1 b1)

ESO data reduction pipeline for the GIRAFFE instrument

cpl-plugin-giraf-calib (2.16.3 dfsg-1) [contrib]

ESO data reduction pipeline calibration data downloader for GIRAFFE

cpl-plugin-hawki (2.4.3 dfsg-1)

ESO data reduction pipeline for the HAWK-I instrument

cpl-plugin-hawki-calib (2.4.3 dfsg-1)

ESO data reduction pipeline calibration data downloader for HAWK-I

cpl-plugin-kmos (2.1.0 dfsg-1)

ESO data reduction pipeline for the KMOS instrument

cpl-plugin-kmos-calib (2.1.0 dfsg-1) [contrib]

ESO data reduction pipeline calibration data downloader for KMOS

cpl-plugin-muse (2.6 dfsg-1)

ESO data reduction pipeline for the MUSE instrument

cpl-plugin-muse-calib (2.6 dfsg-1) [contrib]

ESO data reduction pipeline calibration data downloader for MUSE

cpl-plugin-naco (4.4.6 dfsg-1)

ESO data reduction pipeline for the NaCo instrument

cpl-plugin-naco-calib (4.4.6 dfsg-1) [contrib]

ESO data reduction pipeline NaCo calibration data downloader

cpl-plugin-uves (5.9.1 dfsg-1 b1)

ESO data reduction pipeline for the UVES instrument

cpl-plugin-uves-calib (5.9.1 dfsg-1) [contrib]

ESO data reduction pipeline calibration data downloader for UVES

cpl-plugin-vimos (3.2.3 dfsg-2 b1)

ESO data reduction pipeline for the VIMOS instrument

cpl-plugin-vimos-calib (3.2.3 dfsg-2) [contrib]

ESO data reduction pipeline calibration data downloader for VIMOS

cpl-plugin-visir (4.3.7 dfsg-1 b1)

ESO data reduction pipeline for the VISIR instrument

cpl-plugin-visir-calib (4.3.7 dfsg-1) [contrib]

ESO data reduction pipeline calibration data downloader for VISIR

cpl-plugin-xshoo (3.2.0 dfsg-1 b1)

ESO data reduction pipeline for the XSHOOTER instrument

cpl-plugin-xshoo-calib (3.2.0 dfsg-1) [contrib]

ESO data reduction pipeline calibration data downloader for XSHOOTER

cpuinfo (0.0~git20190201.d5e37ad-1)

CPU INFOrmation library (binary utilities)

crac (2.5.0 dfsg-3)

integrated RNA-Seq read analysis

critterding (1.0-beta12.1-1.3 b1)

Еволюція штучного життя

ctdconverter (2.0-4)

Convert CTD files into Galaxy tool and CWL CommandLineTool files

ctsim (6.0.2-2)

Симуляція комп’ютерного томографа

ctsim-help (6.0.2-2)

Online help file for CTSim

cufflinks (2.2.1 dfsg.1-3 b1) [non-free]

Transcript assembly, differential expression and regulation for RNA-Seq

cutadapt (1.18-1)

Clean biological sequences from high-throughput sequencing reads

cwltool (1.0.20181217162649 dfsg-10)

Common Workflow Language reference implementation

daligner (1.0 git20180524.fd21879-1)

Вирівнювання довгих нуклеотидних послідовностей

dans-gdal-scripts (0.24-3 b1)

GDAL contributed tools by Geographic Information Network of Alaska

darknet (0.0.0 git20180914.61c9d02e-1)

Open Source Neural Networks in C

dascrubber (1.1-1)

alignment-based scrubbing pipeline for DNA sequencing reads

datalad (0.11.2-2)

data files management and distribution platform

datalad-container (0.2.2-2)

DataLad extension for working with containerized environments

dawg (1.2-2)

simulate the evolution of recombinant DNA sequences

dazzdb (1.0 git20180908.0bd5e07-1)

manage nucleotide sequencing read data

dcl-f77 (7.3.3-1)

GFD-DENNOU Club Library (DCL) - FORTRAN77 version

dcm2niix (1.0.20181125-1)

next generation DICOM to NIfTI converter

dcmtk (3.6.4-2.1 deb10u1) [security]

OFFIS DICOM toolkit command line utilities

debian-astro-logo (2.0)

Debian Astronomy Pure Blends Logo

deepnano (0.0 git20170813.e8a621e-3)

alternative basecaller for MinION reads of genomic sequences

deepnano-data (0.0 git20170813.e8a621e-3)

alternative basecaller for MinION reads of genomic sequences (data)

delly (0.8.1-2)

Structural variant discovery by read analysis

dh-r (20190121)

Debian helper tools for packaging R libraries

dialign (2.2.1-10)

Segment-based multiple sequence alignment

dialign-tx (1.0.2-12)

Segment-based multiple sequence alignment

dialign-tx-data (1.0.2-12)

Segment-based multiple sequence alignment (data files)

diamond-aligner (0.9.24 dfsg-1)

accelerated BLAST compatible local sequence aligner

dicomnifti (2.33.1-1)

Конвертує файли DICOM у формат NIfTI

dicompyler (0.4.2.0-2)

radiation therapy research platform

dimbl (0.15-2.1)

Distributed Memory Based Learner

dindel (1.01-wu1-3 dfsg-1 b1)

determines indel calls from short-read data

discosnp (2.3.0-2)

discovering Single Nucleotide Polymorphism from raw set(s) of reads

disulfinder (1.2.11-8)

cysteines disulfide bonding state and connectivity predictor

disulfinder-data (1.2.11-8)

data files for predictor of disulfide bonds in proteins

dlmodelbox (0.1.3-1)

Swiss Army Knife of Deep Learning Models

dnaclust (3-6 b1)

tool for clustering millions of short DNA sequences

doris (5.0.3~beta dfsg-7) [contrib]

Delft object-oriented radar interferometric software

dotter (4.44.1 dfsg-3)

detailed comparison of two genomic sequences

dozzaqueux (3.51-2)

Симулятор для хімічних змішувань

dozzaqueux-data (3.51-2)

databases for chemical mixtures

dpuser (3.3 p1 dfsg-2 b1)

Interactive language for handling numbers, strings, and matrices

drawxtl (5.5-3 b3)

Перегляд кристалічних структур

drslib (0.3.1.p3-1)

Command-line tools for the Data Reference Syntax library

dsdp (5.8-9.4)

Software for Semidefinite Programming

dssp (3.0.0-3 b1)

protein secondary structure assignment based on 3D structure

dwgsim (0.1.12-2)

short sequencing read simulator

dx (1:4.4.4-12)

OpenDX (IBM Visualization Data Explorer) - main package

dxf2gcode (20170925-4)

prepares drawings of parts for automatic machine tools

dxsamples (4.4.0-4)

Sample programs for the OpenDX Data Explorer

e-mem (1.0.1-2)

Efficient computation of Maximal Exact Matches for very large genomes

e00compr (1.0.1-5)

Program to read/write Arcinfo compressed E00 files

ea-utils (1.1.2 dfsg-5)

command-line tools for processing biological sequencing data

easychem (0.6-8 b1)

Показ високо-якісних молекул та двовимірних хімічних формул

ecaccess (4.0.1-1)

clients to access ECMWF facilities

ecflow-client (4.12.0-1)

Client tools for Meteorological workflow

ecflow-server (4.12.0-1)

Meteorological workflow controller - server

ecopcr (1.0.1 dfsg-1)

estimate PCR barcode primers quality

edfbrowser (1.67 dfsg-1)

viewer for biosignal storage files such as bdf and edf

edlib-aligner (1.2.4-1)

edlib sequence alignment tool using edit distance

edtsurf (0.2009-6)

triangulated mesh surfaces for protein structures

eigensoft (7.2.1 dfsg-1)

reduction of population bias for genetic analyses

elastix (4.9.0-1)

Інструментарій для жорсткої та нежорсткої реєстрації зображень

elk-lapw (5.4.24-2)

All-Electron Density-Functional Electronic Structure Code

elki (0.7.1-10.1)

Data mining algorithm development framework

elki-dev (0.7.1-10.1)

Data mining algorithm development framework - development files

elph (1.0.1-2)

DNA/protein sequence motif finder

embassy-domainatrix (0.1.660-3)

Extra EMBOSS commands to handle domain classification file

embassy-domalign (0.1.660-3)

Extra EMBOSS commands for protein domain alignment

embassy-domsearch (1:0.1.660-3)

Extra EMBOSS commands to search for protein domains

embassy-phylip (3.69.660-3) [non-free]

EMBOSS conversions of the programs in the phylip package

emboss (6.6.0 dfsg-7 b1)

European molecular biology open software suite

emboss-data (6.6.0 dfsg-7)

data files for the EMBOSS package

emboss-explorer (2.2.0-10)

web-based GUI to EMBOSS

emboss-lib (6.6.0 dfsg-7 b1)

EMBOSS Libraries

engauge-digitizer (10.10 ds.1-1)

interactively extracts numbers from bitmap graphs or maps

ent (1.2debian-2)

pseudorandom number sequence test program

epsilon-bin (0.9.2 dfsg-4)

Library for wavelet image compression - tools

ergo (3.5-1 b1)

Quantum chemistry program for large-scale calculations

eso-midas (19.02pl1.0-1)

European Southern Observatory Munich Image Data Analysis System

eso-midas-testdata (19.02pl1.0-1)

Test data files for ESO-MIDAS

eso-pipelines (1.2)

ESO VLT Instrument pipeline collection

esorex (3.13.1-1 deb10u1)

Execution Tool for European Southern Observatory pipelines

estscan (3.0.3-3)

ORF-independent detector of coding DNA sequences

esys-particle (2.3.5 dfsg1-2.1)

Software for particle-based numerical modelling. MPI version.

etsf-io (1.0.4-4)

Binary tools to check, merge and read ETSF files

examl (3.0.21-2)

Exascale Maximum Likelihood (ExaML) code for phylogenetic inference

exonerate (2.4.0-4)

generic tool for pairwise sequence comparison

expeyes (4.4.4 dfsg-4)

hardware & software framework for developing science experiments

expeyes-clib (4.4.4 dfsg-4)

hardware & software framework for developing science experiments

eye (19.0221.2026~ds-1)

semantic web reasoning engine

eyes17 (4.4.4 dfsg-4)

hardware & software framework for developing science experiments

fast5 (0.6.5-2)

utilities for manipulating Oxford Nanopore Fast5 files

fasta3 (36.3.8g-1) [non-free]

tools for searching collections of biological sequences

fasta3-doc (36.3.8g-1) [non-free]

user guide for FASTA tools

fastahack (0.0 git20160702.bbc645f dfsg-6)

utility for indexing and sequence extraction from FASTA files

fastaq (3.17.0-2)

FASTA and FASTQ file manipulation tools

fastdnaml (1.2.2-14)

Tool for construction of phylogenetic trees of DNA sequences

fastlink (4.1P-fix100 dfsg-2)

faster version of pedigree programs of Linkage

fastml (3.1-4)

maximum likelihood ancestral amino-acid sequence reconstruction

fastp (0.19.6 dfsg-1)

Ultra-fast all-in-one FASTQ preprocessor

fastqc (0.11.8 dfsg-2)

quality control for high throughput sequence data

fastqtl (2.184 dfsg-6 b1)

Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes

fasttree (2.1.10-2)

phylogenetic trees from alignments of nucleotide or protein sequences

fastx-toolkit (0.0.14-6)

FASTQ/A short nucleotide reads pre-processing tools

fcc (2.8-1 b3)

Script to compile C/C programs and link to Fortran libraries

feedgnuplot (1.51-1)

Трубо-орієнтований зовнішній інтерфейс для Gnuplot

ffindex (0.9.9.9-2)

simple index/database for huge amounts of small files

figtree (1.4.4-3)

graphical phylogenetic tree viewer

fitgcp (0.0.20150429-2)

fitting genome coverage distributions with mixture models

fitscut (1.4.4-4 b4)

Extract cutouts from FITS image format files

fitsh (0.9.2-1 b1)

Software package for astronomical image processing

fitspng (1.4-1)

FITS to PNG converter

fitsverify (4.19-1 b1)

FITS File Format-Verification Tool

fityk (1.3.1-3)

general-purpose nonlinear curve fitting and data analysis

flexbar (1:3.4.0-2)

flexible barcode and adapter removal for sequencing platforms

flextra (5.0-12)

Trajectory model for tracing air transport phenomena

fml-asm (0.1-5)

tool for assembling Illumina short reads in small regions

foma-bin (0.9.18 r243-1 b3)

Xerox-compatible finite-state compiler - library

form (4.2.1-1)

Symbolic manipulation system

fractalnow (0.8.2-2)

Fast, advanced fractal generator

freebayes (1.2.0-2)

Bayesian haplotype-based polymorphism discovery and genotyping

freecad (0.18~pre1 dfsg1-5 deb10u1) [security]

Extensible Open Source CAx program

freecad-common (0.18~pre1 dfsg1-5 deb10u1) [security]

Extensible Open Source CAx program - common files

freecad-python2 (0.18~pre1 dfsg1-5 deb10u1) [security]

Extensible Open Source CAx program - Python 2 binaries

freecad-python3 (0.18~pre1 dfsg1-5 deb10u1) [security]

Extensible Open Source CAx program - Python 3 binaries

freecad-runtime (0.18~pre1 dfsg1-5 deb10u1) [security]

Extensible Open Source CAx program - runtime files

freecontact (1.0.21-7 b1)

fast protein contact predictor

freediams (0.9.4-2)

Програма для виписування рецептів на ліки та перевірки їх взаємодії

freemedforms-common-resources (0.9.4-2)

common data for the FreeMedForms project applications

freemedforms-emr (0.9.4-2)

electronic medical record manager

freemedforms-emr-resources (0.9.4-2)

data for the FreeMedForms EMR

freemedforms-freedata (0.9.4-2)

free extra-data for the FreeMedForms project

freemedforms-libs (0.9.4-2)

common libs for the FreeMedForms project

freemedforms-project (0.9.4-2)

set of medical applications for health professionals

freemedforms-theme (0.9.4-2)

theme for the FreeMedForms project

frog (0.15-1)

tagger and parser for natural languages (runtime)

frogdata (0.16-1)

Data files for Frog

fsa (1.15.9 dfsg-4)

Fast Statistical Alignment of protein, RNA or DNA sequences

fsl (5.0.8-6) [non-free]

transitional dummy package

fsl

virtual package provided by fsl-5.0-core

fsl-5.0-core (5.0.8-6) [non-free]

analysis tools for FMRI, MRI and DTI brain imaging

fsl-core (5.0.8-6) [non-free]

metapackage for the latest version of FSL

fsm-lite (1.0-3)

frequency-based string mining (lite)

ftools-fv (5.5 dfsg-2)

Tool for viewing and editing FITS format files

ftools-pow (5.5 dfsg-2)

Curve plotting and image display interface tool

funtools (1.4.7-4)

Minimal buy-in FITS utility package

fw4spl (17.2.0-2)

FrameWork for Software Production Line

fxt-tools (0.3.8-2)

Multithreaded tracing library

g3data (1:1.5.3-2.1 b1)

Отримання даних з відсканованих графів

gabedit (2.4.8-3 b2)

graphical user interface to Ab Initio packages

galileo (0.5.1-6)

Utility to securely synchronize a Fitbit device with the Fitbit web service

galileo-daemon (0.5.1-6)

Utility to securely synchronize a Fitbit device - daemon

gamgi (0.17.3-2)

General Atomistic Modelling Graphic Interface (GAMGI)

gamgi-data (0.17.3-2)

General Atomistic Modelling Graphic Interface (data)

garli (2.1-3)

phylogenetic analysis of molecular sequence data using maximum-likelihood

garli-examples (2.1-3)

phylogenetic analysis of molecular sequence data (examples)

garli-mpi (2.1-3)

phylogenetic analysis of molecular sequence data using maximum-likelihood (MPI)

garlic (1.6-3)

visualization program for biomolecules

gasic (0.0.r19-4)

genome abundance similarity correction

gatb-core (1.4.1 git20181225.44d5a44 dfsg-3)

Genome Analysis Toolbox with de-Bruijn graph

gatb-core-testdata (1.4.1 git20181225.44d5a44 dfsg-3)

Genome Analysis Toolbox with de-Bruijn graph (test data)

gausssum (3.0.2-1)

Аналіз та відображення виводу Gaussian, GAMESS тощо

gazebo9 (9.6.0-1 b11)

Open Source Robotics Simulator - Binaries

gazebo9-common (9.6.0-1)

Open Source Robotics Simulator - Shared files

gazebo9-plugin-base (9.6.0-1 b11)

Open Source Robotics Simulator - base plug-ins

gbrowse (2.56 dfsg-4)

GMOD Generic Genome Browser

gbrowse-calign (2.56 dfsg-4 b1)

CAlign helper

gbrowse-data (2.56 dfsg-4)

Sample data to use GBrowse

gbutils (5.7.1-1)

utilities for command line econometrics

gchempaint (0.14.17-1.1)

Редактор двовимірних хімічних структур для оточення GNOME2

gcrystal (0.14.17-1.1)

Легковагова візуалізація кристалічних структур

gcu-bin (0.14.17-1.1)

Хімічні утиліти для GNOME (допоміжні застосунки)

gcx (1.3-1.1 b2)

astronomical image processing and photometry gtk application

gdal-bin (2.4.0 dfsg-1 deb10u1) [security]

Geospatial Data Abstraction Library - Utility programs

gdal-data (2.4.0 dfsg-1 deb10u1) [security]

Бібліотека абстракції геопросторових даних — файли даних

gdis (0.90-5 b1)

Переглядач моделей молекул та кристалів

gdis-data (0.90-5)

Переглядач моделей молекул та кристалів (файли даних)

gdl-astrolib (2018.08.10 dfsg-1)

Low-level astronomy software for GDL

gdl-coyote (2019.01.29-1)

GDL library from D. Fannings IDL courses

gdl-mpfit (1.85 2017.01.03-3)

Robust non-linear least squares curve fitting for GDL

gdpc (2.2.5-9)

visualiser of molecular dynamic simulations

gdpc-examples (2.2.5-9)

example files for the gdpc program

geant321 (1:3.21.14.dfsg-11)

[Фізика] Інструмент опису детектора частинок та засіб моделювання

geant321-data (1:3.21.14.dfsg-11)

[Physics] Data for GEANT 3.21 detector simulator

gelemental (1.2.0-12)

Periodic Table viewer

gemma (0.98.1 dfsg-1)

Genome-wide Efficient Mixed Model Association

gemma-doc (0.98.1 dfsg-1)

Example folder for GEMMA

genometester (4.0 git20180508.a9c14a6 dfsg-1)

toolkit for performing set operations on k-mer lists

genometools (1.5.10 ds-3)

versatile genome analysis toolkit

genometools-common (1.5.10 ds-3)

shared data files for GenomeTools

gentle (1.9 cvs20100605 dfsg1-7 b1)

Набір для планування генетичного клонування

geographiclib-tools (1.49-4)

C library to solve some geodesic problems -- tools

geotiff-bin (1.4.3-1)

GeoTIFF (geografic enabled TIFF) library -- tools

gerris (20131206 dfsg-18 b2)

Обраховувач потоків рідин

getdata (0.2-3)

management of external databases

gff2aplot (2.0-11)

pair-wise alignment-plots for genomic sequences in PostScript

gff2ps (0.98l-2)

produces PostScript graphical output from GFF-files

gfsview (20121130 dfsg-6)

graphical viewer for Gerris simulation files

gfsview-batch (20121130 dfsg-6)

batch-version of viewer for Gerris simulation files

ghkl (5.0.0.2456-1)

diffractometer computation control application

ghmm (0.9~rc3-2)

General Hidden-Markov-Model library - tools

giella-core (0.1.1~r129227 svn121148-2)

GTCORE files for building Giellatekno language packages

giella-sme (0.0.20150917~r121176-3)

Giellatekno single language data for North Saami

giella-sme-dev (0.0.20150917~r121176-3)

Giellatekno single language data for North Saami (dev extras)

giira (0.0.20140625-2)

RNA-Seq driven gene finding incorporating ambiguous reads

ginga (2.7.2-2)

Astronomical image viewer

ginkgocadx (3.8.8-1)

Medical Imaging Software and complete DICOM Viewer

glam2 (1064-5)

gapped protein motifs from unaligned sequences

gliese (3.0.95-2) [non-free]

stellar data set from the Third Catalogue of Nearby Stars

glueviz (0.14.1 dfsg-1)

Linked data visualization

gmap (2019-01-24-1) [non-free]

spliced and SNP-tolerant alignment for mRNA and short reads

gmt (5.4.5 dfsg-2)

Generic Mapping Tools

gmt-common (5.4.5 dfsg-2)

Generic Mapping Tools - Architecture-independent files

gmt-dcw (1.1.4-2)

Digital Chart of the World (DCW) for GMT

gmt-gshhg (2.3.7-4)

Global Self-consistent Hierarchical High-resolution Geography (GSHHG)

gmt-gshhg-full (2.3.7-4)

Full resolution coastlines for the Generic Mapping Tools

gmt-gshhg-high (2.3.7-4)

High resolution coastlines for the Generic Mapping Tools

gmt-gshhg-low (2.3.7-4)

Low resolution coastlines for the Generic Mapping Tools

gnuastro (0.8-1)

GNU Astronomy Utilities programs

gpaw (1.5.1-1)

DFT and beyond within the projector-augmented wave method

gpaw-data (0.9.20000-2)

gpaw datasets/setups

gperiodic (3.0.3-1)

Періодична таблиця Менделєєва

gpx (2.5.2-3)

Утиліта перетворення Gcode до x3g

gpx2shp (0.71.0-7)

Перетворює файли GPS чи GPX у файл формату ESRI Shape

gr-fcdproplus (3.7.25.4b6464b-5 b3)

Funcube Dongle Pro Plus controller for GNU Radio

grabix (0.1.7-1)

wee tool for random access into BGZF files

graphlan (1.1.3-1)

circular representations of taxonomic and phylogenetic trees

grass (7.6.0-1)

Geographic Resources Analysis Support System (GRASS GIS)

grass-core (7.6.0-1)

GRASS GIS core components

grass-gui (7.6.0-1)

GRASS GIS graphical user interfaces

gravit (0.5.1 dfsg-3)

visually stunning gravity simulator

gravit-data (0.5.1 dfsg-3)

data files for Gravit

gri (2.12.26-1 b1)

a language for scientific illustration

grinder (0.5.4-5)

Versatile omics shotgun and amplicon sequencing read simulator

gromacs (2019.1-1)

Molecular dynamics simulator, with building and analysis tools

gromacs-data (2019.1-1)

GROMACS molecular dynamics sim, data and documentation

gromacs-mpich (2019.1-1)

Molecular dynamics sim, binaries for MPICH parallelization

gromacs-openmpi (2019.1-1)

Molecular dynamics sim, binaries for OpenMPI parallelization

gubbins (2.3.4-1)

phylogenetic analysis of genome sequences

gvb (1.4-1)

visual simulator of 1 and 2-dimensional vibrations

gwama (2.2.2 dfsg-2)

Genome-Wide Association Meta Analysis

gwyddion (2.52-1)

Scanning Probe Microscopy visualization and analysis tool

gwyddion-common (2.52-1)

architecture-independent files for Gwyddion SPM analysis tool

gwyddion-plugins (2.52-1)

plugins for Gwyddion SPM analysis tool

gyoto (1.3.1-1)

General relativistic geodesic integration and ray-tracing

gyoto-bin (1.3.1-1)

General relativistic ray-tracing command-line interface

h5utils (1.13.1-3 b1)

HDF5 files visualization tools

harminv (1.4.1-2)

extraction of complex frequencies and amplitudes from time series

harvest-tools (1.3-4)

archiving and postprocessing for reference-compressed genomic multi-alignments

hdf-compass (0.6.0-1)

viewer for HDF5 and related formats

hdf5-helpers (1.10.4 repack-10 deb10u1) [security]

Hierarchical Data Format 5 (HDF5) - Helper tools

hdf5-tools (1.10.4 repack-10 deb10u1) [security]

Hierarchical Data Format 5 (HDF5) - Runtime tools

herisvm (0.8.2-1)

machine learning tools for classification algorithms

hfst (3.15.0-1.1~deb10u1)

Helsinki Finite-State Transducer Technology

hfst-ospell (0.5.0-2)

Spell checker library and tool based on HFST

hhsuite (3.0~beta3 dfsg-3)

sensitive protein sequence searching based on HMM-HMM alignment

hhsuite-data (3.0~beta3 dfsg-3)

sensitive protein sequence searching based on HMM-HMM alignment (data)

hilive (1.1-2)

realtime alignment of Illumina reads

hinge (0.5.0-4)

long read genome assembler based on hinging

hisat2 (2.1.0-2)

graph-based alignment of short nucleotide reads to many genomes

hmmer (3.2.1 dfsg-1)

profile hidden Markov models for protein sequence analysis

hmmer2 (2.3.2 dfsg-6)

profile hidden Markov models for protein sequence analysis

hmmer2-pvm (2.3.2 dfsg-6)

HMMER programs with PVM (Parallel Virtual Machine) support

hodie (1.5.0-1)

prints the date in Latin

horae (071~svn537-2.1) [contrib]

interactive graphical processing and analysis of EXAFS data

hpcc (1.5.0-1 b1)

HPC Challenge benchmark

htcondor (8.6.8~dfsg.1-2 deb10u1)

distributed workload management system

hyphy-common (2.3.14 dfsg-1)

Hypothesis testing using Phylogenies (common files)

hyphy-mpi (2.3.14 dfsg-1)

Hypothesis testing using Phylogenies (MPI version)

hyphy-pt (2.3.14 dfsg-1)

Hypothesis testing using Phylogenies (pthreads version)

idba (1.1.3-3)

iterative De Bruijn Graph short read assemblers

ifeffit (2:1.2.11d-10.2 b3) [contrib]

Interactive XAFS analysis program

ifrit (4.1.2-6 b1)

powerful tool for visualizing 3-dimensional data sets

igor (1.3.0 dfsg-1)

infers V(D)J recombination processes from sequencing data

imagej (1.52j-1)

Image processing program with a focus on microscopy images

imagevis3d (3.1.0-7 b2)

desktop volume rendering application for large data

imview (1.1.9h-1)

Переглядач та аналізатор зображень

indelible (1.03-4)

powerful and flexible simulator of biological evolution

indigo-utils (1.2.3-1)

Organic Chemistry Toolkit Utilities

infernal (1.1.2-2)

inference of RNA secondary structural alignments

inhomog (0.1.9.2-1)

kinematical backreaction and average scale factor evolution

ipig (0.0.r5-3)

integrating PSMs into genome browser visualisations

iqtree (1.6.9 dfsg-1)

efficient phylogenetic software by maximum likelihood

iraf (2.16.1 2018.11.01-2)

Image Reduction and Analysis Facility

iraf-dev (2.16.1 2018.11.01-2)

Image Reduction and Analysis Facility (development files)

iraf-fitsutil (2018.07.06-3 b1)

FITS utilities for IRAF

iraf-mscred (5.05 2018.07.09-1 b1)

CCD mosaic reduction package for IRAF

iraf-noao (2.16.1 2018.11.01-2)

IRAF NOAO data reduction package

iraf-noao-dev (2.16.1 2018.11.01-2)

IRAF NOAO data reduction package (development files)

iraf-rvsao (2.8.3-1 b1)

IRAF package to obtain radial velocities from spectra

iraf-sptable (1.0~pre20180612-1 b1)

IRAF package for Tabular Spectra

iraf-wcstools (3.9.5-3)

Handle the WCS of a FITS image (IRAF package)

irstlm (6.00.05-2)

IRST Language Modeling Toolkit

ismrmrd-schema (1.4.0-1)

schema for ISMRMRD

ismrmrd-tools (1.4.0-1)

command-line tools for ISMRMRD

itksnap (3.6.0-3)

Напівавтоматична сегментація структур в 3D-зображеннях

iva (1.0.9 ds-6)

iterative virus sequence assembler

jaligner (1.0 dfsg-6)

Smith-Waterman algorithm with Gotoh's improvement

jblas (1.2.4-2)

fast linear algebra library for Java

jellyfish (2.2.10-2)

count k-mers in DNA sequences

jellyfish-examples (2.2.10-2)

count k-mers in DNA sequences (examples for testing)

jellyfish1 (1.1.11-4)

count k-mers in DNA sequences

jemboss (6.6.0 dfsg-7)

graphical user interface to EMBOSS

jmodeltest (2.1.10 dfsg-7)

HPC selection of models of nucleotide substitution

jmol (14.6.4 2016.11.05 dfsg1-4)

Молекулярний переглядач

jsamp (1.3.5-1)

Java Simple Application Messaging Protocol tool for VO

jube (2.2.2-1)

JUBE Benchmarking Environment

julia (1.0.3 dfsg-4)

high-performance programming language for technical computing

julia-common (1.0.3 dfsg-4)

high-performance programming language for technical computing (common files)

jupyter-notebook (5.7.8-1)

Jupyter interactive notebook

kalign (1:2.03 20110620-5)

Global and progressive multiple sequence alignment

kalzium (4:17.08.3-1 b1)

Періодична таблиця та інструменти пов’язані з хімією

kalzium-data (4:17.08.3-1)

Файли з даними для Kalzium

khmer (2.1.2 dfsg-6)

in-memory DNA sequence kmer counting, filtering & graph traversal

khmer-common (2.1.2 dfsg-6)

common files for the khmer project tools

kineticstools (0.6.1 git20180425.27a1878-2)

detection of DNA modifications

kineticstools-data (0.6.1 git20180425.27a1878-2)

detection of DNA modifications -- data files

king-probe (2.16.160404 git20180613.a09b012-1)

Evaluate and visualize protein interatomic packing

kissplice (2.4.0-p1-4)

Detection of various kinds of polymorphisms in RNA-seq data

klustakwik (2.0.1-1 b2)

Автоматичне сортування зразків (піків) в кластери

kmc (2.3 dfsg-7)

count kmers in genomic sequences

kmer (0~20150903 r2013-6)

suite of tools for DNA sequence analysis

kmer-examples (0~20150903 r2013-6)

sample data for kmer suite of tools for DNA sequence analysis

konclude (0.6.2~dfsg-6)

tableau-based description logic reasoner for the semantic web

kraken (1.1-3)

assigning taxonomic labels to short DNA sequences

kst (2.0.8-3 b1)

scientific data plotting tool

kstars (5:3.0.0-1)

desktop planetarium, observation planning and telescope control

kstars-data (5:3.0.0-1)

Файли з даними для настільного планетарію KStars

kstars-data-extra-tycho2 (1.1r1-9.1) [non-free]

Tycho-2 star catalog for KStars

kxterm (20061220 dfsg3-4.4)

CERNLIB data analysis suite - KUIP terminal emulator

lagan (2.0-3)

highly parametrizable pairwise global genome sequence aligner

lamarc (2.1.10.1 dfsg-3)

Likelihood Analysis with Metropolis Algorithm using Random Coalescence

lambda-align (1.0.3-5)

Local Aligner for Massive Biological DatA

lambda-align2 (2.0.0-6)

Local Aligner for Massive Biological DatA - v2

lammps (0~20181211.gitad1b1897d dfsg1-2)

Molecular Dynamics Simulator

last-align (963-2)

genome-scale comparison of biological sequences

lbt (1.2.2-6)

converts from LTL formulas to Büchi automata

leaff (0~20150903 r2013-6)

biological sequence library utilities and applications

lefse (1.0.8-2)

determine features of organisms, clades, taxonomic units, genes

libadios-bin (1.13.1-16)

ADIOS Adaptable IO system for simulations - binaries

libadios-examples (1.13.1-16)

Examples for the ADIOS Adaptable IO system

libball1.5-data (1.5.0 git20180813.37fc53c-3)

Biochemical Algorithms Library (data files)

libbio-tools-phylo-paml-perl (1.7.3-2)

Bioperl interface to the PAML suite

libbio-tools-run-alignment-clustalw-perl (1.7.4-1)

Bioperl interface to Clustal W

libbio-tools-run-alignment-tcoffee-perl (1.7.4-1)

Bioperl interface to T-Coffee

libcg3-1 (1.1.7-1 b1)

Runtime for CG-3

libeccodes-data (2.12.0-1)

GRIB and BUFR enecoding/encoding software library - data

libgeotiff-epsg (1.4.3-1) [non-free]

GeoTIFF library -- EPSG Geodetic Parameter Dataset

libghemical-data (3.0.0-4.2)

Molecular Modelling Library (data files)

libgnuradio-fcdproplus3.7.11 (3.7.25.4b6464b-5 b3)

Funcube Dongle Pro Plus controller for GNU Radio (runtime)

libgtkdatabox0-glade (1:0.9.3.1-1)

Gtk library to display large amounts of numerical data (glade API)

libgtkdatabox0-libglade (1:0.9.3.1-1)

Gtk library to display large amounts of numerical data (glade lib)

libhdf5-jni (1.10.4 repack-10 deb10u1) [security]

native library used by libhdf5-java

liblas-bin (1.8.1-10)

ASPRS LiDAR data translation toolset

liblemon-utils (1.3.1 dfsg-2)

Library for Efficient Modeling and Optimization in Networks (utilities)

liblinear-tools (2.1.0 dfsg-4)

Окремі застосунки для LIBLINEAR

libmstoolkit-tools (82-6)

libraries for manipulating mass spectrometry data - tools

libncarg-bin (6.5.0-2)

NCAR command-language library - development tools

libncarg-data (6.5.0-2)

NCAR command-language library - Data

libngram-tools (1.3.2-3)

OpenGRM n-gram Language Modeling toolkit

libocas-tools (0.97 dfsg-5)

Standalone applications implementing the OCAS solver

libotb (6.6.1 dfsg-1 b1)

ORFEO Toolbox library metapackage

libotb-apps (6.6.1 dfsg-1 b1)

Plugins for ORFEO Toolbox applications

libpluto-jpl-eph-dev (0.0~git20180228-1.1)

development files to interact with JPL ephemeres data

libpluto-lunar-dev (0.0~git20180825.e34c1d1-1)

development files for astronomical Lunar library

libpwiz-tools (3.0.18342-2)

ProteoWizard command line tools

libqgis-customwidgets (2.18.28 dfsg-2)

QGIS custom widgets for Qt Designer

libsilo-bin (4.10.2.real-5 b1)

Utilities to manipulate libsilo files

libssm-bin (1.4.0-1)

macromolecular superposition library - binaries

libvcflib-tools (1.0.0~rc2 dfsg-2)

C library for parsing and manipulating VCF files (tools)

libxy-bin (1.3-1.1 b1)

xylib - utilities

libyade (2019.01a-2)

Platform for discrete element modeling. Libraries

liggghts (3.8.0 repack1-4)

Open Source DEM Particle Simulation Software.

limereg (1.4.1-4 b1)

Lightweight Image Registration

linguider (4.1.1-1)

Astronomical autoguiding program for Linux

litl-tools (0.1.9-4)

Lightweight Trace Library - tools

logcentral (2.7-1.1 b2)

Logging service for distributed applications

logcentral-tools (2.7-1.1 b2)

Logging service for distributed applications

logol (1.7.9-1)

Pattern matching tool using Logol language

logol-bin (1.7.9-1)

Pattern matching tool using Logol language

loki (2.4.7.4-8)

Аналіз зчеплення MCMC на загальних родоводах

looptools (2.8-1 b3)

Integral Evaluator of One-loop Feynman Diagram

lorene (0.0.0~cvs20161116 dfsg-1)

framework for numerical relativity

lorene-codes-src (0.0.0~cvs20161116 dfsg-1)

source files of LORENE-based codes

ltrsift (1.0.2-8)

postprocessing and classification of LTR retrotransposons

lttoolbox-dev (3.5.0-3)

Development tools and library for lttoolbox

lucy (1.20-1)

DNA sequence quality and vector trimming tool

lutefisk (1.0.7 dfsg-4 b1)

de novo interpretation of peptide CID spectra

lxi-tools (1.21-1)

LAN eXtensions for Instrumentation (LXI) software interface

macs (2.1.2.1-1)

Model-based Analysis of ChIP-Seq on short reads sequencers

macsyfinder (1.0.5-2)

detection of macromolecular systems in protein datasets

maffilter (1.3.1 dfsg-1 b1)

process genome alignment in the Multiple Alignment Format

maffilter-examples (1.3.1 dfsg-1)

process genome alignment in the Multiple Alignment Format (example data)

mafft (7.407-2)

Multiple alignment program for amino acid or nucleotide sequences

mapdamage (2.0.9 dfsg-1)

tracking and quantifying damage patterns in ancient DNA sequences

mapsembler2 (2.2.4 dfsg-3 b1)

bioinformatics targeted assembly software

maq (0.7.1-8)

maps short fixed-length polymorphic DNA sequence reads to reference sequences

maqview (0.2.5-9)

graphical read alignment viewer for short gene sequences

mash (2.1 dfsg-2)

fast genome and metagenome distance estimation using MinHash

matlab-gdf (0.1.2-2.1) [contrib]

IO library for the GDF -- Matlab interface

maude (2.7-2 b2)

high-performance logical framework

mauve-aligner (2.4.0 4736-1)

multiple genome alignment

mayavi2 (4.5.0-1)

Пакунок для візуалізації наукових двовимірних та тривимірних даних

mbt (3.4-1)

memory-based tagger-generator and tagger

mbtserver (0.12-1)

Server extensions for the MBT tagger

meep (1.7.0-3)

software package for FDTD simulation

meep-lam4 (1.7.0-3)

software package for FDTD simulation, parallel (OpenMPI) version

meep-mpi-default (1.7.0-3)

software package for FDTD simulation, parallel (OpenMPI) version

meep-mpich2 (1.7.0-3)

software package for FDTD simulation, parallel (OpenMPI) version

meep-openmpi (1.7.0-3)

software package for FDTD simulation, parallel (OpenMPI) version

melting (5.2.0-1)

compute the melting temperature of nucleic acid duplex

merkaartor (0.18.3 ds-5 b1)

Редактор мап для OpenStreetMap.org

meryl (0~20150903 r2013-6)

in- and out-of-core kmer counting and utilities

metaphlan2 (2.7.8-1)

Metagenomic Phylogenetic Analysis

metaphlan2-data (2.6.0 ds-4)

data package for Metagenomic Phylogenetic Analysis

metastudent (2.0.1-6)

predictor of Gene Ontology terms from protein sequence

metastudent-data (2.0.1-4)

predictor of Gene Ontology terms from protein sequence - data files

metastudent-data-2 (1.0.0-4)

predictor of Gene Ontology terms from protein sequence - data #2

metview (5.3.0-2)

Interactive data visualization and analysis environment,

metview-data (5.3.0-2)

Data needed for the Metview data analysis environment

mgltools-bhtree (1.5.7-3) [non-free]

Bhtree library extension module

mgltools-cadd (1.5.7-4) [non-free]

Computer Aided Drug Discovery (CADD) Pipeline

mgltools-cmolkit (1.5.7~rc1 cvs.20140424-2) [non-free]

Python classes to interpret trajectories of Gromacs

mgltools-dejavu (1.5.7-3) [non-free]

visualization of 3D geometry using the OpenGL with Python

mgltools-geomutils (1.5.7-3) [non-free]

Python library for geometric analyses

mgltools-mglutil (1.5.7-4) [non-free]

Molecular Graphics Laboratory utility collection

mgltools-molkit (1.5.7-3) [non-free]

Python classes to read and manipulate molecules

mgltools-networkeditor (1.5.7-4) [non-free]

Python GUI library for the editing of networks

mgltools-opengltk (1.5.7-3) [non-free]

Opengltk Python extension

mgltools-pyautodock (1.5.7-3) [non-free]

Python implementation of autodock

mgltools-pybabel (1.5.7-3) [non-free]

molecular structure file access and interpretation

mgltools-pyglf (1.5.7-3) [non-free]

GLF library Python extension to write text in OpenGL

mgltools-scenario2 (1.5.7-2) [non-free]

Python-based viewer of molecular structures

mgltools-sff (1.5.6~rc3~cvs.20120206-1) [non-free]

Simple Force Field for Python

mgltools-support (1.5.7-3) [non-free]

Update mechanism of MGLTools

mgltools-symserv (1.5.7-2) [non-free]

Symetry server

mgltools-utpackages (1.5.7-3) [non-free]

UT Austin software Python extensions

mgltools-viewerframework (1.5.7-3) [non-free]

ViewerFramework supports building visualization applications

mgltools-vision (1.5.7 dfsg-2) [non-free]

Python-based Visual Programming Environment

mgltools-visionlibraries (1.5.7-2) [non-free]

Extensions for Python-based Visual Programming Environment

mgltools-volume (1.5.7-3) [non-free]

Volume rendering Python package

mgltools-webservices (1.5.7-3) [non-free]

webservices for components of autodocktools

mhap (2.1.3 dfsg-2)

locality-sensitive hashing to detect long-read overlaps

mia-doctools (2.4.6-4)

Helper scripts for run-time document creation

mia-tools (2.4.6-4)

Command line tools for gray scale image processing

mia-viewit (1.0.5-2)

Viewer program for 3D data sets created by using MIA

mialmpick (0.2.14-2)

Tools for landmark picking in 3D volume data sets

microbegps (1.0.0-3)

explorative taxonomic profiling tool for metagenomic data

microbiomeutil (20101212 dfsg1-2)

Microbiome Analysis Utilities

microbiomeutil-data (20101212 dfsg1-2)

Reference 16S sequences and NAST-alignments used by microbiomeutil tools

microhope (4.4.4 dfsg-4)

hardware & software framework to learn microcontrollers

minc-tools (2.3.00 dfsg-3 b1)

MNI medical image format tools

minia (1.6906-2)

short-read biological sequence assembler

miniasm (0.3 dfsg-1)

ultrafast de novo assembler for long noisy DNA sequencing reads

minimac4 (1.0.0-2)

Fast Imputation Based on State Space Reduction HMM

minimap (0.2-4)

tool for approximate mapping of long biosequences such as DNA reads

minimap2 (2.15 dfsg-1)

versatile pairwise aligner for genomic and spliced nucleotide sequences

minisat (1:2.2.1-5 b3)

Fast and lightweight SAT solver

minisat (1.0-4)

solver for pseudo-Boolean constraints

minisat2 (1:2.2.1-5 b3)

Transitional package for minisat

minisat2

virtual package provided by minisat

mipe (1.1-7)

Tools to store PCR-derived data

mira-assembler (4.9.6-4 b1)

Whole Genome Shotgun and EST Sequence Assembler

mira-rfam-12s-rrna (4.9.6-4)

extract of RFAM 12 rRNA database

missfits (2.8.0-2)

Basic maintenance and packaging tasks on FITS files

mitools (2.0.3-1)

view, convert and perform basic maths with medical image datasets

mldemos (0.5.1 git.1.ee5d11f-4)

Machine Learning Demos (MLDemos) with Visualization

mlpack-bin (3.0.4-1)

intuitive, fast, scalable C machine learning library (binaries)

mlv-smile (1.47-6)

Пошук статистично значущих закономірностей в послідовностях

mmass (5.5.0-5)

Mass spectrometry tool for proteomics

mmass-modules (5.5.0-5)

Інструмент мас-спектрометрії для протеоміка — модулі розширення

mobyle (1.5.5 dfsg-6)

Web portal that provides web forms for command-line software

mobyle-programs (5.1.2-3)

program descriptions for the mobyle portal

mobyle-tutorials (1.5.0-4)

program tutorials for the mobyle portal

mobyle-utils (1.5.5 dfsg-6)

binary tools used by Mobyle

mocassin (2.02.73-1 b1)

MOnte CArlo SimulationS of Ionised Nebulae

mocassin-benchmarks (2.02.73-1)

benchmarks for the photoionisation code MOCASSIN

mocassin-data (2.02.73-1)

atomic and optical data for the photoionisation code MOCASSIN

mocassin-examples (2.02.73-1)

Examples for the photoionisation code MOCASSIN

molds (0.3.1-1 b7)

Semi-empirical electronic structure and molecular dynamics

mona (1.4-17-1 b1)

theorem prover based on automata

montage (6.0 dfsg-6)

Toolkit for assembling FITS images into mosaics

montage-gridtools (6.0 dfsg-6)

Create files to run montage on the grid

montecarlo-base (20061220 dfsg3-3.1)

[Physics] Common files for CERNLIB Monte Carlo libraries

montecarlo-data (20061220 dfsg3-3.1)

[Physics] data for CERNLIB Monte Carlo libraries

mopac7-bin (1.15-6 b3)

Semi-empirical Quantum Chemistry Library (binaries)

morse-simulator (1.4-5)

Multi-OpenRobot Simulation Engine

morse-simulator-data (1.4-5)

Multi-OpenRobot Simulation Engine

mothur (1.41.21-1)

sequence analysis suite for research on microbiota

mpb (1.7.0-5)

MIT Photonic-Bands

mpb-mpi (1.7.0-5)

MIT Photonic-Bands, parallel (mpich) version

mpb-scm (1.7.0-5)

MIT Photonic-Bands initialisation files

mpgrafic (0.3.18-1)

MPI version of N-body initial conditions grafic package

mpqc (2.3.1-19)

Massively Parallel Quantum Chemistry Program

mpqc-support (2.3.1-19)

Massively Parallel Quantum Chemistry Program (support tools)

mpqc3 (0.0~git20170114-4.1)

Massively Parallel Quantum Chemistry Program

mpqc3-data (0.0~git20170114-4.1)

Massively Parallel Quantum Chemistry Program (data files)

mptp (0.2.4-1)

single-locus species delimitation

mrbayes (3.2.6 dfsg-2 b1)

Bayesian Inference of Phylogeny

mrbayes-mpi (3.2.6 dfsg-2 b1)

Bayesian Inference of Phylogeny - mpi version

mriconvert (1:2.1.0-3)

Утиліта перетворення медичних зображень

mricron (0.20140804.1~dfsg.1-3)

Перетворення, перегляд і аналіз знімків магнітно-резонансної томографії

mricron-data (0.20140804.1~dfsg.1-3)

data files for MRIcron

mrpt-apps (1:1.5.6-1 b1)

Mobile Robot Programming Toolkit - Console and GUI applications

mrpt-common (1:1.5.6-1)

Mobile Robot Programming Toolkit - Example datasets and files

mrs (6.0.5 dfsg-7 b2)

Information Retrieval System for Biomedical databanks

mrtrix (0.2.13-2)

diffusion-weighted MRI white matter tractography

mrtrix3 (3.0~rc3 git135-g2b8e7d0c2-3)

diffusion-weighted MRI white matter tractography

mseed2sac (2.2 ds1-4)

Convert MiniSEED time series data to SAC

mssstest (3.0-7) [non-free]

Normalisation of disease scores for patients with Multiple Sclerosis

mummer (3.23 dfsg-4)

Efficient sequence alignment of full genomes

munipack (0.5.11-2)

Astronomical photometry software package

munipack-cli (0.5.11-2)

Command line interface of Munipack

munipack-core (0.5.11-2)

Core routines of Munipack

munipack-gui (0.5.11-2)

Graphical user interface of Munipack

murasaki (1.68.6-8 b1)

homology detection tool across multiple large genomes

murasaki-common (1.68.6-8)

homology detection tool across multiple large genomes (common files)

murasaki-mpi (1.68.6-8 b1)

homology detection tool across multiple large genomes (MPI-version)

muscle (1:3.8.1551-2)

Multiple alignment program of protein sequences

music-bin (1.0.7-4 b1)

Multi-Simulation Coordinator for MPI -- Utilities

mustang (3.2.3-3)

multiple structural alignment of proteins

mustang-testdata (3.2.3-3)

multiple structural alignment of proteins, test data

nanook (1.33 dfsg-1)

pre- and post-alignment analysis of nanopore sequencing data

nanopolish (0.11.0-2)

consensus caller for nanopore sequencing data

nast-ier (20101212 dfsg1-2)

NAST-based DNA alignment tool

nastran (0.1.95-1 b2) [non-free]

NASA Structural Analysis System

nautic (1.5-4)

computation of observer position in astro-navigation

ncbi-blast (2.8.1-1 deb10u1)

next generation suite of BLAST sequence search tools

ncbi-blast -legacy (2.8.1-1 deb10u1)

NCBI Blast legacy call script

ncbi-entrez-direct (10.9.20190219 ds-1 b10)

NCBI Entrez utilities on the command line

ncbi-epcr (2.3.12-1-7)

Tool to test a DNA sequence for the presence of sequence tagged sites

ncbi-rrna-data (6.1.20170106 dfsg1-0 deb10u2)

large rRNA BLAST databases distributed with the NCBI toolkit

ncbi-seg (0.0.20000620-5)

tool to mask segments of low compositional complexity in amino acid sequences

ncbi-tools-bin (6.1.20170106 dfsg1-0 deb10u2)

NCBI libraries for biology applications (text-based utilities)

ncbi-tools-x11 (6.1.20170106 dfsg1-0 deb10u2)

NCBI libraries for biology applications (X-based utilities)

ncl-ncarg (6.5.0-2)

NCAR Command Language and NCAR graphics

ncl-tools (2.1.21 git20180827.c71b264-2)

tools to deal with NEXUS files

nco (4.7.9-1)

Command-line operators to analyze netCDF files

ncoils (2002-7)

coiled coil secondary structure prediction

ncview (2.1.8 ds-3 b1)

X11 visual browser for NetCDF format files

neat (2.2-1)

Nebular Empirical Analysis Tool

neobio (0.0.20030929-4)

computes alignments of amino acid and nucleotide sequences

netcdf-bin (1:4.6.2-1)

Programs for reading and writing NetCDF files

neurodebian (0.38.3)

neuroscience-oriented distribution - repository configuration

neurodebian-archive-keyring (0.38.3)

neuroscience-oriented distribution - GnuPG archive keys

neurodebian-desktop (0.38.3)

neuroscience-oriented distribution - desktop integration

neurodebian-dev (0.38.3)

neuroscience-oriented distribution - development tools

neurodebian-freeze (0.38.3)

nd_freeze tool to freeze APT sources to use snapshots

neurodebian-popularity-contest (0.38.3)

neuroscience-oriented distribution - popcon integration

neuron (7.6.3-1)

Simulation environment for computational models of neurons

neuron-dev (7.6.3-1)

Neuron simulation environment - Development files

nifti2dicom (0.4.11-1 b4)

convert 3D medical images to DICOM 2D series

nifti2dicom-data (0.4.11-1)

data files for nifti2dicom

njplot (2.4-8)

phylogenetic tree drawing program

norsnet (1.0.17-4)

tool to identify unstructured loops in proteins

norsp (1.0.6-4)

predictor of non-regular secondary structure

numdiff (5.9.0-1)

Compare similar files with numeric fields

nutsqlite (2.0.6-1)

Dietary nutrition analysis software

nwchem (6.8.1-5)

High-performance computational chemistry software

nwchem-data (6.8.1-5)

High-performance computational chemistry software (data files)

oar-common (2.5.8-1 deb10u1)

OAR batch scheduler common package

oar-node (2.5.8-1 deb10u1)

OAR batch scheduler node package

oar-server (2.5.8-1 deb10u1)

OAR batch scheduler server package

oar-server-mysql (2.5.8-1 deb10u1)

OAR batch scheduler MySQL server backend package

oar-server-pgsql (2.5.8-1 deb10u1)

OAR batch scheduler PostgreSQL server backend package

oar-user (2.5.8-1 deb10u1)

OAR batch scheduler user package

oar-user-mysql (2.5.8-1 deb10u1)

OAR batch scheduler MySQL user backend package

oar-user-pgsql (2.5.8-1 deb10u1)

OAR batch scheduler PostgreSQL user backend package

oar-web-status (2.5.8-1 deb10u1)

OAR batch scheduler visualization tool package

obdgpslogger (0.16-1.3 b2)

Набір інструментів для запису OBDII та GPS даних

occt-draw (7.3.0 dfsg1-5)

Open CASCADE Technology command interpreter and graphical test system

oce-draw (0.18.2-3)

OpenCASCADE Community Edition CAE platform shared library

octave-bart (0.4.04-2)

Octave bindings for BART

octave-biosig (1.9.3-2)

Octave bindings for BioSig library

octave-gdf (0.1.2-2.1 b3)

IO library for the GDF -- Octave interface

octave-psychtoolbox-3 (3.0.15.20190207.dfsg1-1)

toolbox for vision research -- Octave bindings

octomap-tools (1.8.1 dfsg-1)

Tools for 3D occupancy grid mapping

octovis (1.8.1 dfsg-1)

Visualization tool for OctoMap

odil (0.10.0-3)

C 11 library for the DICOM standard (application)

odin (2.0.3-1)

Розробка, моделювання та виконання послідовностей магнітного резонансу

ogdi-bin (3.2.1 ds-4)

Open Geographic Datastore Interface Library -- utilities

openbabel (2.4.1 dfsg-3)

Chemical toolbox utilities (cli)

openbabel-gui (2.4.1 dfsg-3)

Chemical toolbox utilities (graphical user interface)

opencaster (3.2.2 dfsg-1.1 b1)

MPEG2 transport stream data generator and packet manipulator

openfoam (1812 dfsg1-2)

Open source toolbox for Computational Fluid Dynamics (CFD) - binaries

openfoam-examples (1812 dfsg1-2)

Open source toolbox for Computational Fluid Dynamics (CFD) - examples

openms (2.4.0-real-1)

package for LC/MS data management and analysis

openms-common (2.4.0-real-1)

package for LC/MS data management and analysis - shared data

openmx (3.8.5 dfsg1-1)

package for nano-scale material simulations

openmx-data (3.8.5 dfsg1-1)

package for nano-scale material simulations (data)

openrocket (15.03.5) [contrib]

Model Rocket Simulator

openuniverse (1.0beta3.1 dfsg-6)

3D Universe Simulator

openuniverse-common (1.0beta3.1 dfsg-6)

3D Universe Simulator data files

optgeo (2.25-1)

simulator for geometrical optics

opticalraytracer (3.2-1.1)

Virtual lens design workshop

origami (1.2.7 really0.7.4-1.1)

command-line management tool for Folding @ Home clients

orthanc (1.5.6 dfsg-1 deb10u1) [security]

Lightweight, RESTful DICOM server for medical imaging

orthanc-dicomweb (0.6 dfsg-1)

Plugin to extend Orthanc with support of WADO and DICOMweb

orthanc-imagej (1.2 dfsg-1)

ImageJ plugin to import images from Orthanc

orthanc-mysql (2.0-2)

Plugins to use MySQL or MariaDB as a database back-end to Orthanc

orthanc-postgresql (3.2-1)

Plugins to use PostgreSQL as a database back-end to Orthanc

orthanc-webviewer (2.5-1)

Web viewer of medical images for Orthanc

orthanc-wsi (0.6-2)

Whole-slide imaging support for Orthanc (digital pathology)

ossim-core (2.6.2-1)

OSSIM core utilities

otb-bin (6.6.1 dfsg-1 b1)

ORFEO Toolbox command line applications

otb-bin-qt (6.6.1 dfsg-1 b1)

ORFEO Toolbox graphical user interface applications

otb-testdriver (6.6.1 dfsg-1 b1)

ORFEO Toolbox library - OTBTestDriver

otf-trace (1.12.5 dfsg-4)

Open Trace Format support library - development files

p4vasp (0.3.30 dfsg-5)

visualization suite for the Vienna Ab-initio Simulation Package (VASP)

paje.app (1.98-1 b7)

generic visualization tool (Gantt chart and more)

pal2nal (14.1-2)

converts proteins to genomic DNA alignment

paleomix (1.2.13.3-1)

pipelines and tools for the processing of ancient and modern HTS data

paml (4.9h dfsg-1)

Phylogenetic Analysis by Maximum Likelihood (PAML)

paraclu (9-2)

Parametric clustering of genomic and transcriptomic features

parafly (0.0.2013.01.21-4)

parallel command processing using OpenMP

paraview (5.4.1 dfsg4-3.1 b2)

Програма паралельної візуалізації

parsinsert (1.04-4)

Parsimonious Insertion of unclassified sequences into phylogenetic trees

parsinsert-testdata (1.04-4)

Test data for parsinsert

parsnp (1.2 dfsg-5)

rapid core genome multi-alignment

patman (1.2.2 dfsg-5)

rapid alignment of short sequences to large databases

paw (1:2.14.04.dfsg.2-9.1 b4)

Physics Analysis Workstation - a graphical analysis program

paw (1:2.14.04.dfsg.2-9.1 b4)

Physics Analysis Workstation (Lesstif-enhanced version)

paw-common (1:2.14.04.dfsg.2-9.1)

Physics Analysis Workstation (common files)

paw-demos (1:2.14.04.dfsg.2-9.1)

Physics Analysis Workstation examples and tests

pbbamtools (0.19.0 dfsg-4)

processing Pacific Biosciences binary alignment/map files

pbbarcode (0.8.0-5)

annotate PacBio sequencing reads with barcode information

pbdagcon (0.3 git20161121.0000000 ds-1.1)

sequence consensus using directed acyclic graphs

pbgenomicconsensus (2.3.2-5)

Pacific Biosciences variant and consensus caller

pbh5tools (0.8.0 git20170929.58d54ff dfsg-1)

tools for manipulating Pacific Biosciences HDF5 files

pbhoney (15.8.24 dfsg-3)

genomic structural variation discovery

pbjelly (15.8.24 dfsg-3)

genome assembly upgrading tool

pbsim (1.0.3 git20180330.e014b1d dfsg-1)

simulator for PacBio sequencing reads

pdb2pqr (2.1.1 dfsg-5)

Preparation of protein structures for electrostatics calculations

pegasus-wms (4.4.0 dfsg-8)

Scientific workflow management system for HTCondor

perlprimer (1.2.4-1)

Graphical design of primers for PCR

perm (0.4.0-4)

efficient mapping of short reads with periodic spaced seeds

pftools (3 dfsg-3)

build and search protein and DNA generalized profiles

phast (1.4 dfsg-1)

phylogenetic analysis with space/time models

phipack (0.0.20160614-3)

PHI test and other tests of recombination

phybin (0.3-3)

binning/clustering newick trees by topology

phylip (1:3.697 dfsg-1)

package of programs for inferring phylogenies

phyml (3:3.3.20180621-2)

Phylogenetic estimation using Maximum Likelihood

physamp (1.1.0-1)

sample sequence alignment corresponding to phylogeny

phyutility (2.7.3 dfsg-2)

simple analyses or modifications on both phylogenetic trees and data matrices

phyx (0.999 ds-1)

UNIX-style phylogenetic analyses on trees and sequences

picard-tools (2.18.25 dfsg-2)

Command line tools to manipulate SAM and BAM files

picosat (960-1 b2)

SAT solver with proof and core support

piler (0~20140707-2)

genomic repeat analysis

pilon (1.23 dfsg-1)

automated genome assembly improvement and variant detection tool

pirs (2.0.2 dfsg-8)

Profile based Illumina pair-end Reads Simulator

pirs-examples (2.0.2 dfsg-8)

profile basd Illumina pair-end Reads Simulator (example data)

pirs-profiles (2.0.2 dfsg-8)

profile basd Illumina pair-end Reads Simulator (profile data)

pkg-r-autopkgtest (20190121)

Script for the automatic testing of R packages

pktools (2.6.7.6 ds-1 b1)

GDAL add-on tools to perform useful raster processing

placnet (1.03-3)

Plasmid Constellation Network project

planets (0.1.13-19)

Gravitation simulation of planetary bodies

plasmidseeker (1.0 dfsg-1)

identification of known plasmids from whole-genome sequencing reads

plast (2.3.2 dfsg-1)

Parallel Local Sequence Alignment Search Tool

plast-example (2.3.2 dfsg-1)

Parallel Local Sequence Alignment Search Tool (example data)

plastimatch (1.7.4 dfsg.1-2)

medical image reconstruction and registration

plink (1.07 dfsg-2)

whole-genome association analysis toolset

plink1.9 (1.90~b6.6-181012-1)

whole-genome association analysis toolset

pluto-jpl-eph (0.0~git20180228-1.1)

command line handling of JPL ephemeres data

pluto-lunar (0.0~git20180825.e34c1d1-1)

routines for predictions of positions in solar system

pnetcdf-bin (1.10.0-3 b1)

Programs for reading and writing parallel NetCDF files

poa (2.0 20060928-7)

Partial Order Alignment for multiple sequence alignment

populations (1.2.33 svn0120106 dfsg-2)

population genetic software

porechop (0.2.4 dfsg-1)

adapter trimmer for Oxford Nanopore reads

poretools (0.6.0 dfsg-3)

toolkit for nanopore nucleotide sequencing data

poretools-data (0.6.0 dfsg-3)

toolkit for nanopore nucleotide sequencing data -- sample datasets

pp-popularity-contest (1.0.6-4 b1)

PredictProtein popularity contest

pprepair (0.0~20170614-dd91a21-3 b1)

planar partition repair tool

praat (6.0.48-1)

program for speech analysis and synthesis

prank (0.0.170427 dfsg-2)

Probabilistic Alignment Kit for DNA, codon and amino-acid sequences

predictnls (1.0.20-5)

prediction and analysis of protein nuclear localization signals

predictprotein (1.1.08-1)

suite of protein sequence analysis tools

prepair (0.7.1-3 b2)

polygon repair tool

prepair-data (0.7.1-3)

polygon repair tool -- example data

prime-phylo (1.0.11-7 b1)

bayesian estimation of gene trees taking the species tree into account

primer3 (2.4.0-2)

tool to design flanking oligo nucleotides for DNA amplification

primer3-examples (2.4.0-2)

tool to design flanking oligo nucleotides for DNA amplification (examples)

proalign (0.603-4)

Probabilistic multiple alignment program

probabel (0.5.0 dfsg-3)

Toolset for Genome-Wide Association Analysis

probabel-examples (0.5.0 dfsg-3)

Example files for ProbABEL

probalign (1.4-8)

multiple sequence alignment using partition function posterior probabilities

probcons (1.12-12)

PROBabilistic CONSistency-based multiple sequence alignment

probcons-extra (1.12-12)

Extra programs from the probcons package

proda (1.0-12)

Комбінаційне розташування протеїнових послідовностей

prodigal (1:2.6.3-4)

Microbial (bacterial and archaeal) gene finding program

profbval (1.0.22-6)

predictor of flexible/rigid protein residues from sequence

profisis (1.0.11-5)

prediction of protein-protein interaction sites from sequence

profnet-bval (1.0.22-6)

neural network architecture for profbval

profnet-chop (1.0.22-6)

neural network architecture for profchop

profnet-con (1.0.22-6)

neural network architecture for profcon

profnet-isis (1.0.22-6)

neural network architecture for profisis

profnet-md (1.0.22-6)

neural network architecture for metadisorder

profnet-norsnet (1.0.22-6)

neural network architecture for norsnet

profnet-prof (1.0.22-6)

neural network architecture for profacc

profnet-snapfun (1.0.22-6)

neural network architecture for snapfun

profphd (1.0.42-3)

secondary structure and solvent accessibility predictor

profphd-net (1.0.22-6)

neural network architecture for profphd

profphd-utils (1.0.10-5)

profphd helper utilities convert_seq and filter_hssp

proftmb (1.1.12-8)

per-residue prediction of bacterial transmembrane beta barrels

progressivemauve (1.2.0 4713 dfsg-4)

multiple genome alignment algorithms

proj-bin (5.2.0-1)

Cartographic projection library (tools)

proj-rdnap (2008-8) [non-free]

RDNAP grid correction files for PROJ

proteinortho (5.16.b dfsg-1)

Detection of (Co-)orthologs in large-scale protein analysis

prottest (3.4.2 dfsg-3)

selection of best-fit models of protein evolution

pscan-chip (1.1-2)

ChIP-based identifcation of TF binding sites

pscan-chip-data (1.1-2)

auxiliary data for PScan-ChIP

pscan-tfbs (1.2.2-3)

search for transcription factor binding sites

psfex (3.17.1 dfsg-5)

Point Spread Function model extractor

psi3 (3.4.0-6 b3)

Quantum Chemical Program Suite

psi4 (1:1.2.1-2)

Quantum Chemical Program Suite

psi4-data (1:1.2.1-2)

Quantum Chemical Program Suite (data files)

psortb (3.0.6 dfsg-1 b1)

bacterial localization prediction tool

psychtoolbox-3-common (3.0.15.20190207.dfsg1-1)

toolbox for vision research -- arch/interpreter independent part

psychtoolbox-3-lib (3.0.15.20190207.dfsg1-1)

toolbox for vision research -- arch-specific parts

purify (2.0.0-4 b1)

Collection of routines for radio interferometric imaging

pyfai (0.17.0 dfsg1-3)

Fast Azimuthal Integration scripts

pyfr (1.5.0-3)

flux reconstruction in Python

pymca (5.4.3 dfsg-1)

Applications and toolkit for X-ray fluorescence analysis -- scripts

pymca-data (5.4.3 dfsg-1)

Architecture independent data files for PyMca

pymoctool (0.5.0-4)

Python Multi-Order Coverage maps tool for Virtual Observatory

pymol (2.2.0 dfsg-4)

Графічна система відтворення молекул

pymol-data (2.2.0 dfsg-4)

data files for PyMOL

pysatellites (2.5-1)

simulates the launching of satellites

python-cyvcf2 (0.10.4-1)

VCF parser based on htslib (Python 2)

python-drizzle-testdata (1.12-2)

Dithered image combination for Python (Test data)

python-pybigwig (0.3.12-1 b1)

Python 2 module for quick access to bigBed and bigWig files

python-pynlpl (1.1.2-1)

PyNLPl is a library for Natural Language Processing (Python 2 version)

python-shogun (3.2.0-5.2)

Large Scale Machine Learning Toolbox

python3-airr (1.2.1-2)

Data Representation Standard library for antibody and TCR sequences

python3-amp (0.6.1-1)

Atomistic Machine-learning Package (python 3)

python3-bcbio (1.1.2-3)

library for analysing high-throughput sequencing data

python3-cyvcf2 (0.10.4-1)

VCF parser based on htslib (Python 3)

python3-gfapy (1.0.0 dfsg-3)

flexible and extensible software library for handling sequence graphs

python3-gffutils (0.9-1)

Work with GFF and GTF files in a flexible database framework

python3-keras (2.2.4-1)

deep learning framework running on Theano or TensorFlow

python3-pybel (0.12.1-1)

Biological Expression Language

python3-pybigwig (0.3.12-1 b1)

Python 3 module for quick access to bigBed and bigWig files

python3-pynlpl (1.1.2-1)

PyNLPl is a library for Natural Language Processing (Python 3 version)

pyzo (4.4.3-1.2)

interactive editor for scientific Python

qcumber (1.0.14 dfsg-1)

quality control of genomic sequences

qfits-tools (6.2.0-8 b2)

FITS manipulation tools

qfitsview (3.3 p1 dfsg-2 b1)

FITS file viewer based on DPUSER

qgis (2.18.28 dfsg-2)

Geographic Information System (GIS)

qgis-api-doc (2.18.28 dfsg-2)

QGIS API documentation

qgis-common (2.18.28 dfsg-2)

QGIS - architecture-independent data

qgis-plugin-grass (2.18.28 dfsg-2)

GRASS plugin for QGIS

qgis-plugin-grass-common (2.18.28 dfsg-2)

GRASS plugin for QGIS - architecture-independent data

qgis-provider-grass (2.18.28 dfsg-2)

GRASS provider for QGIS

qgis-providers (2.18.28 dfsg-2)

collection of data providers to QGIS

qgis-providers-common (2.18.28 dfsg-2)

collection of data providers to QGIS - architecture-independent files

qgis-server (2.18.28 dfsg-2)

QGIS server providing various OGC services

qmapshack (1.12.3-1)

GPS mapping (GeoTiff and vector) and GPSr management

qmc (0.94-3.1)

Quine McClusky Simplification Tool

qnifti2dicom (0.4.11-1 b4)

convert 3D medical images to DICOM 2D series (gui)

qrisk2 (0.1.20150729-4)

Обчислення ризику серцево-судинних захворювань

qthid-fcd-controller (4.1-3 b1)

Funcube Dongle controller

qtltools (1.1 dfsg-3 b1)

Tool set for molecular QTL discovery and analysis

quantum-espresso (6.3-4)

Electronic-Structure and Ab-Initio Molecular Dynamics Suite

quantum-espresso-data (6.3-4)

Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation)

quorum (1.1.1-2)

QUality Optimized Reads of genomic sequences

qutemol (0.4.1~cvs20081111-12)

interactive visualization of macromolecules

r-cran-alakazam (0.2.11-1)

Immunoglobulin Clonal Lineage and Diversity Analysis

r-cran-sdmtools (1.1-221-1)

Species Distribution Modelling Tools

r-cran-shazam (0.1.11-1)

Immunoglobulin Somatic Hypermutation Analysis

r-cran-tigger (0.3.1-1)

Infers new Immunoglobulin alleles from Rep-Seq Data

racon (1.3.2-1 b1)

consensus module for raw de novo DNA assembly of long uncorrected reads

radiant (2.7 dfsg-2)

explore hierarchical metagenomic data with zoomable pie charts

rambo-k (1.21 dfsg-2)

Read Assignment Method Based On K-mers

rampler (1.1.0-1)

module for sampling genomic sequences

rapmap (0.12.0 dfsg-3 b1)

rapid sensitive and accurate DNA read mapping via quasi-mapping

rapmap-dev (0.12.0 dfsg-3)

rapmap - rapid sensitive and accurate DNA read mapping (some headers)

rapmap-example-data (0.12.0 dfsg-3)

example data for rapmap - rapid sensitive and accurate DNA read mapping

rasmol (2.7.6.0-1)

visualization of biological macromolecules

raster3d (3.0-3-5)

tools for generating images of proteins or other molecules

rate4site (3.0.0-6)

detector of conserved amino-acid sites

rawtran (1.1-1)

RAW photo to FITS converter

raxml (8.2.12 dfsg-1)

Randomized Axelerated Maximum Likelihood of phylogenetic trees

ray (2.3.1-6)

de novo genome assemblies of next-gen sequencing data

ray-extra (2.3.1-6)

Scripts and XSL sheets for post-processing for ray

rdkit-data (201809.1 dfsg-6)

Collection of cheminformatics and machine-learning software (data files)

rdp-classifier (2.10.2-4)

extensible sequence classifier for fungal lsu, bacterial and archaeal 16s

readseq (1-13)

Conversion between sequence formats

reapr (1.0.18 dfsg-4)

universal tool for genome assembly evaluation

refmac-dictionary (5.41-1)

dictionary for macromolecular refinement and model building

relion-bin (1.4 dfsg-4)

toolkit for 3D reconstructions in cryo-electron microscopy

relion-bin gui (1.4 dfsg-4)

parallel toolkit for 3D reconstructions in cryo-electron microscopy

relion-bin mpi (1.4 dfsg-4)

parallel toolkit for 3D reconstructions in cryo-electron microscopy

relion-bin mpi gui (1.4 dfsg-4)

parallel toolkit for 3D reconstructions in cryo-electron microscopy

repeatmasker-recon (1.08-4)

finds repeat families from biological sequences

reprof (1.0.1-6)

protein secondary structure and accessibility predictor

rna-star (2.7.0a dfsg-1)

ultrafast universal RNA-seq aligner

rnahybrid (2.1.2-5)

Fast and effective prediction of microRNA/target duplexes

roary (3.12.0 dfsg-2)

high speed stand alone pan genome pipeline

roguenarok (1.0-3)

versatile and scalable algorithm for rogue taxon identification

rsem (1.3.1 dfsg-1)

RNA-Seq by Expectation-Maximization

rtax (0.984-6)

Classification of sequence reads of 16S ribosomal RNA gene

ruby-rgfa (1.3.1 dfsg-1)

parse, edit and write GFA format graphs in Ruby

runcircos-gui (0.0 git20180828.97703b9-1)

GUI tool to run circos

sac2mseed (1.12 ds1-3)

Convert SAC waveform data to MiniSEED

saga (2.3.1 dfsg-4 b1)

System for Automated Geoscientific Analyses

saga-common (2.3.1 dfsg-4)

SAGA GIS architecture independent files

saint (2.5.0 dfsg-3)

Significance Analysis of INTeractome

salmid (0.1.23-1)

rapid Kmer based Salmonella identifier from sequence data

salmon (0.12.0 ds1-1 b1)

wicked-fast transcript quantification from RNA-seq data

samblaster (0.1.24-2)

marks duplicates, extracts discordant/split reads

samtools (1.9-4)

processing sequence alignments in SAM, BAM and CRAM formats

samtools-test (1.9-4)

test files for the samtools package

saods9 (8.0.1 repack-2)

Image display tool for astronomy

sasview (4.2.1-1)

Small Angle Scattering Analysis suite

sat4j (2.3.5-0.3)

Efficient library of SAT solvers in Java

savi (1.5.1-3)

satellite constellation visualisation

sbmltoolbox (4.1.0-4)

libsbml toolbox for octave and matlab

scamp (2.0.4 dfsg-1 b1)

Compute astrometric and photometric solutions

science-astronomy (1.10)

Debian Science Astronomy transitional package

science-astronomy-dev (1.10)

Debian Science Astronomy-dev transitional package

science-biology (1.10)

Науковий набір Debian — пакунки з біології

science-chemistry (1.10)

Науковий набір Debian — пакунки з хімії

science-config (1.10)

Debian Science Project config package

science-dataacquisition (1.10)

Науковий набір Debian — накопичення даних

science-dataacquisition-dev (1.10)

Debian Science data acquisition development packages

science-distributedcomputing (1.10)

Debian Science Distributed Computing packages

science-economics (1.10)

Debian Science Economics packages

science-electronics (1.10)

Debian Science Electronics transitional package

science-electrophysiology (1.10)

Debian Science packages for Electrophysiology

science-engineering (1.10)

Debian Science Engineering packages

science-engineering-dev (1.10)

Debian Science Engineering-dev packages

science-financial (1.10)

Debian Science financial engineering and computational finance

science-geography (1.10)

Debian Science Geography packages

science-geometry (1.10)

Debian Science geometry packages

science-highenergy-physics (1.10)

Debian Science High Energy Physics packages

science-highenergy-physics-dev (1.10)

Debian Science High Energy Physics development packages

science-imageanalysis (1.10)

Науковий набір Debian — аналіз зображень

science-linguistics (1.10)

Науковий набір Debian — пакунки з мовознавства

science-logic (1.10)

Debian Science Logic packages

science-machine-learning (1.10)

Debian Science Machine Learning packages

science-mathematics (1.10)

Науковий набір Debian — пакунки з математики

science-mathematics-dev (1.10)

Debian Science Mathematics-dev packages

science-meteorology (1.10)

Науковий набір Debian — пакунки з метеорології

science-meteorology-dev (1.10)

Debian Science Meteorology-dev packages

science-nanoscale-physics (1.10)

Debian Science Nanoscale Physics packages

science-nanoscale-physics-dev (1.10)

Debian Science Nanoscale Physics development packages

science-neuroscience-cognitive (1.10)

Debian Science packages for Cognitive Neuroscience

science-neuroscience-modeling (1.10)

Debian Science packages for modeling of neural systems

science-numericalcomputation (1.10)

Науковий набір Debian — пакунки з числових обрахунків

science-physics (1.10)

Науковий набір Debian — пакунки з фізики

science-physics-dev (1.10)

Debian Science Physics-dev packages

science-presentation (1.10)

Debian Science generic tools for presentations

science-psychophysics (1.10)

Debian Science packages for Psychophysics

science-robotics (1.10)

Науковий набір Debian — пакунки з робототехніки

science-robotics-dev (1.10)

Debian Robotics development packages

science-simulations (1.10)

Debian Science Simulation packages

science-statistics (1.10)

Науковий набір Debian — пакунки зі статистики

science-tasks (1.10)

Науковий набір Debian — задачі для tasksel

science-typesetting (1.10)

Науковий набір Debian — пакунки з верстання

science-viewing (1.10)

Науковий набір Debian — пакунки з візуалізації даних

science-viewing-dev (1.10)

Debian Science development of visualisation applications

scoary (1.6.16-1)

pangenome-wide association studies

scram (0.16.2-1 b1)

Probabilistic Risk Analysis Tool

scram-gui (0.16.2-1 b1)

SCRAM GUI front-end

scrm (1.7.3-1)

simulator of evolution of genetic sequences

sctk (2.4.10-20151007-1312Z dfsg2-3.1~deb10u1)

speech recognition scoring toolkit

scythe (0.994 git20141017.20d3cff-1)

Bayesian adaptor trimmer for sequencing reads

sdaps (1.2.1-2)

scripts for data acquisition with paper-based surveys

sdrangelove (0.0.1.20150707-2 b6)

Osmocom Software Defined Radio

seaview (1:4.7-1)

Multiplatform interface for sequence alignment and phylogeny

seer (1.1.4-2 b2)

genomic sequence element (kmer) enrichment analysis

segemehl (0.3.4-1)

short read mapping with gaps

segyio-bin (1.8.3-1)

SEG-Y read/write library for seismic processing (shell utilities)

seq-gen (1.3.4-2) [non-free]

simulate the evolution of nucleotide or amino acid sequences

seqan-apps (2.4.0 dfsg-11)

C library for the analysis of biological sequences

seqmagick (0.7.0-1)

imagemagick-like frontend to Biopython SeqIO

seqprep (1.3.2-3)

stripping adaptors and/or merging paired reads of DNA sequences with overlap

seqprep-data (1.3.2-3)

example data set for seqprep - only used for testing

seqsero (1.0.1 dfsg-1)

Salmonella serotyping from genome sequencing data

seqtk (1.3-1)

Fast and lightweight tool for processing sequences in the FASTA or FASTQ format

sextractor (2.19.5 dfsg-6)

Source extractor for astronomical images

sga (0.10.15-4)

de novo genome assembler that uses string graphs

shelxle (1.0.952-1)

graphical user interface for SHELXL

shogun-cmdline-static (3.2.0-8 b1)

Large Scale Machine Learning Toolbox

sibsim4 (0.20-4)

align expressed RNA sequences on a DNA template

sickle (1.33 git20150314.f3d6ae3-1)

windowed adaptive trimming tool for FASTQ files using quality

sift (4.0.3b-6) [non-free]

predicts if a substitution in a protein has a phenotypic effect

sigma-align (1.1.3-6)

Simple greedy multiple alignment of non-coding DNA sequences

sigviewer (0.6.2-2)

GUI viewer for biosignals such as EEG, EMG, and ECG

silx (0.9.0 dfsg-3 deb10u1)

Toolbox for X-Ray data analysis - Executables

sim4 (0.0.20121010-5)

tool for aligning cDNA and genomic DNA

sim4db (0~20150903 r2013-6)

batch spliced alignment of cDNA sequences to a target genome

simgrid-java (3.21 dfsg-4)

Java bindings for the SimGrid Toolkit

siril (0.9.10-2)

astronomical image processing tool

skycat (3.1.2 starlink1~b dfsg-5 b1)

Image visualization and access to catalogs and data for astronomy

slang-xfig (0.2.0~.117-2)

produce plots and drawings through Xfig's fig2dev in S-Lang

sleepyhead (1.0.0-beta-2 dfsg-6)

Sleep tracking software with a focus on monitoring CPAP treatment

smalr (1.1 dfsg-2)

interrogation of the methylation status of nucleotide sequencing reads

smalt (0.7.6-8)

Sequence Mapping and Alignment Tool

smalt-examples (0.7.6-8)

Sequence Mapping and Alignment Tool (examples)

smithwaterman (0.0 git20160702.2610e25-7)

determine similar regions between two strings or genomic sequences

snakemake (5.4.0-1)

pythonic workflow management system

snap (2013-11-29-9)

location of genes from DNA sequence with hidden markov model

snap-aligner (1.0~beta.18 dfsg-3)

Scalable Nucleotide Alignment Program

snaphu (1.4.2-7) [non-free]

Statistical-Cost, Network-Flow Algorithm for 2D Phase Unwrapping

sniffles (1.0.11 ds-1)

structural variation caller using third-generation sequencing

snp-sites (2.4.1-1)

Binary code for the package snp-sites

snpomatic (1.0-4)

fast, stringent short-read mapping software

soapaligner (2.20-3)

aligner of short reads of next generation sequencers

soapdenovo (1.05-5)

short-read assembly method to build de novo draft assembly

soapdenovo2 (241 dfsg-3)

short-read assembly method to build de novo draft assembly

soapsnp (1.03-3)

resequencing utility that can assemble consensus sequence of genomes

solvate (1.0-2) [non-free]

arranges water molecules around protein structures

solvate-doc (1.0-2) [non-free]

Documentation for solvate

sortmerna (2.1-3)

tool for filtering, mapping and OTU-picking NGS reads

spaced (1.2.0-201605 dfsg-1)

alignment-free sequence comparison using spaced words

spades (3.13.0 dfsg2-2)

genome assembler for single-cell and isolates data sets

spatialite-bin (4.3.0-2 b4)

Geospatial extension for SQLite - tools

spd (1.3.0-1 b4)

Synchrotron image corrections and azimuthal integration

splash (2.8.0-1 b1)

Visualisation tool for Smoothed Particle Hydrodynamics simulation

spoa (1.1.5-1)

SIMD partial order alignment tool

sprai (0.9.9.23 dfsg-2)

single-pass sequencing read accuracy improver

spread-phy (1.0.7 dfsg-2)

analyze and visualize phylogeographic reconstructions

squizz (0.99d dfsg-2)

Converter for genetic sequences and alignments

sra-toolkit (2.9.3 dfsg-1 b1)

utilities for the NCBI Sequence Read Archive

srst2 (0.2.0-6)

Short Read Sequence Typing for Bacterial Pathogens

ssake (4.0-2)

genomics application for assembling millions of very short DNA sequences

ssake-examples (4.0-2)

example data for SSAKE, a genomic assembler of short reads

sspace (2.1.1 dfsg-4)

scaffolding pre-assembled contigs after extension

ssw-align (1.1-2)

Smith-Waterman aligner based on libssw

stacks (2.2 dfsg-1)

pipeline for building loci from short-read DNA sequences

stacks-web (2.2 dfsg-1)

web interface for displaying loci from short-read sequences

staden (2.0.0 b11-4)

DNA sequence assembly (Gap4/Gap5), editing and analysis tools

staden-common (2.0.0 b11-4)

Architecture independent files for Staden

staden-io-lib-examples (1.14.11-6)

programs for manipulating DNA sequencing files (usage examples)

staden-io-lib-utils (1.14.11-6)

programs for manipulating DNA sequencing files

stardata-common (0.8 b1)

Common framework to manage astronomy packages

starplot (0.95.5-8.3)

3-dimensional perspective star map viewer

starpu-contrib-examples (1.2.6 dfsg-6) [contrib]

Task scheduler for heterogeneous multicore machines - exs

starpu-examples (1.2.6 dfsg-7)

Task scheduler for heterogeneous multicore machines - exs

stellarium (0.18.3-1)

Програма для спостереження за фотореалістичною картиною неба

stellarium-data (0.18.3-1)

Файли даних для Stellarium

step (4:18.08.1-1 b1)

Інтерактивний симулятор фізичних процесів для KDE

stiff (2.4.0-3)

convert scientific FITS images to the TIFF format

stilts (3.1.5-1)

Starlink Tables Infrastructure Library Tool Set

stimfit (0.15.8-1 b1)

Program for viewing and analyzing electrophysiological data

subread (1.6.3 dfsg-1)

toolkit for processing next-gen sequencing data

subread-data (1.6.3 dfsg-1)

data files for subread package

suitename (0.3.070628-2)

categorize each suite in an RNA backbone

sumaclust (1.0.31-2)

fast and exact clustering of genomic sequences

sumatra (1.0.31-2)

fast and exact comparison and clustering of sequences

sumo (1.1.0 dfsg1-1)

Simulation of Urban MObility (SUMO)

surankco (0.0.r5 dfsg-2)

Supervised Ranking of Contigs in de novo Assemblies

survex (1.2.38-1)

cave surveying and mapping software

survex-aven (1.2.38-1)

sophisticated cave survey viewer for Survex

swarm (2.2.2 dfsg-2)

robust and fast clustering method for amplicon-based studies

swarp (2.38.0 dfsg-4)

Resample and co-add together FITS images

swarp

virtual package provided by suckless-tools

swe-basic-data (1.80.00.0002-1)

basic data files for the libswe package

swe-standard-data (00004-1)

standard data for the Swiss Ephemeris

sweed (3.2.1 dfsg-1)

assessment of SNPs for their evolutionary advantage

syrthes (4.3.0-dfsg1-3)

Моделювання перехідних теплових процесів у складних однорідних тілах

syrthes-gui (4.3.0-dfsg1-3)

Transient thermal simulations in complex solid geometries - GUI

syrthes-tests (4.3.0-dfsg1-3)

Test cases for SYRTHES

syrthes-tools (4.3.0-dfsg1-3)

Transient thermal simulations in complex solid geometries - tools

t-coffee (12.00.7fb08c2-4)

Multiple Sequence Alignment

t-coffee-examples (12.00.7fb08c2-4)

annotated examples for the use of T-Coffee

tabix (1.9-12~deb10u1)

generic indexer for TAB-delimited genome position files

tandem-mass (1:201702011-1)

mass spectrometry software for protein identification

tantan (22-1)

low complexity and tandem repeat masker for biosequences

tcliis (8.0.1 repack-2)

Tcl IIS protocol package

terraintool (1.13-2)

Generates survex format terrain models from SRTM and ASTER data

therion (5.4.3ds1-6)

Cave surveying - 2D and 3D drawing software

therion-viewer (5.4.3ds1-6)

Cave surveying - 3D viewer for therion models

theseus (3.3.0-8)

superimpose macromolecules using maximum likelihood

theseus-examples (3.3.0-8)

superimpose macromolecules using maximum likelihood (examples)

tigr-glimmer (3.02b-2)

Gene detection in archea and bacteria

timbl (6.4.13-1)

Tilburg Memory Based Learner

timblserver (1.12-1)

Server extensions for Timbl

tksao (8.0.1 repack-2)

Tk widgets for astronomical imaging and data visualization

tm-align (20170708 dfsg-2)

structural alignment of proteins

tnseq-transit (2.3.4-1)

statistical calculations of essentiality of genes or genomic regions

topcat (4.6.2-1)

Tool for OPerations on Catalogues And Tables

tophat (2.1.1 dfsg1-2 b1)

fast splice junction mapper for RNA-Seq reads

topp (2.4.0-real-1)

set of programs implementing The OpenMS Proteomic Pipeline

toppred (1.10-7)

transmembrane topology prediction

toulbar2 (1.0.0 dfsg3-2)

Exact combinatorial optimization for Graphical Models

toulbar2-doc (1.0.0 dfsg3-2)

Exact combinatorial optimization for Graphical Models - documentation

trace2dbest (3.0.1-1)

bulk submission of chromatogram data to dbEST

trace2dbest-doc (3.0.1-1)

Documentation and sample files for trace2dbest

tracetuner (3.0.6~beta dfsg-1)

interpretation of DNA Sanger sequencing data

transcalc (0.14-6)

microwave and RF transmission line calculator

transdecoder (5.0.1-2)

find coding regions within RNA transcript sequences

transrate-tools (1.0.0-2)

helper for transrate

transtermhp (2.09-4)

find rho-independent transcription terminators in bacterial genomes

travis (190101-1)

trajectory analyzer and visualizer

tree-ppuzzle (5.2-11)

Parallelized reconstruction of phylogenetic trees by maximum likelihood

tree-puzzle (5.2-11)

Reconstruction of phylogenetic trees by maximum likelihood

treeview (1.1.6.4 dfsg1-4)

Java re-implementation of Michael Eisen's TreeView

treeviewx (0.5.1 git20100823.7e4d0e9-1)

Displays and prints phylogenetic trees

triangle-bin (1.6-2) [non-free]

High-quality 2-D mesh generator binary programs

trimmomatic (0.38 dfsg-1)

flexible read trimming tool for Illumina NGS data

trinityrnaseq (2.6.6 dfsg-6)

RNA-Seq De novo Assembly

trinityrnaseq-examples (2.6.6 dfsg-6)

RNA-Seq De novo Assembly common example and testing files

trnascan-se (2.0.0-3) [non-free]

detection of transfer RNA genes in genomic sequence

trnascan-se-common (2.0.0-3) [non-free]

detection of transfer RNA genes in genomic sequence (common files)

tunnelx (20170928-2)

Cave Survey drawing software

tvc (5.0.3 git20151221.80e144e dfsg-2)

genetic variant caller for Ion Torrent sequencing platforms

twms (0.07z-1)

tiny web map service

ubertooth (2018.12.R1-2)

2.4 GHz wireless development platform for Bluetooth experimentation

ubertooth-firmware (2018.12.R1-2)

Firmware for Ubertooth

ubertooth-firmware-source (2018.12.R1-2)

Source code for the Ubertooth firmware

uc-echo (1.12-11)

error correction algorithm designed for short-reads from NGS

ucto (0.14-2)

Unicode Tokenizer

uctodata (0.8-2)

Data files for Ucto

uhd-host (3.13.1.0-3)

universal hardware driver for Ettus Research products - host apps

unanimity (3.3.0 dfsg-2.1)

generate and process accurate consensus nucleotide sequences

unicycler (0.4.7 dfsg-2)

hybrid assembly pipeline for bacterial genomes

unicycler-data (0.4.7 dfsg-2)

hybrid assembly pipeline for bacterial genomes (data package)

units-filter (3.9-1)

Parser for expressions concerning physical values

varna (3-93 ds-2)

Visualization Applet for RNA

varscan (2.4.3 dfsg-3) [non-free]

variant detection in next-generation sequencing data

vcftools (0.1.16-1)

Collection of tools to work with VCF files

velvet (1.2.10 dfsg1-5)

Nucleic acid sequence assembler for very short reads

velvet-example (1.2.10 dfsg1-5)

Example data for the Velvet sequence assembler

velvet-long (1.2.10 dfsg1-5)

Nucleic acid sequence assembler for very short reads, long version

velvet-tests (1.2.10 dfsg1-5)

Test data for the Velvet sequence assembler

velvetoptimiser (2.2.6-2)

automatically optimise Velvet do novo assembly parameters

viewmol (2.4.1-25)

graphical front end for computational chemistry programs

visp-images-data (3.2.0-1)

visual servoing library - dataset reference files

vistrails (2.2.4-1)

Science visualisation workflow toolkit

vmtk (1.3 dfsg-2.3) [non-free]

the Vascular Modeling Toolkit

voro (0.4.6 dfsg1-3)

library for the computation of the Voronoi diagram

voro -examples (0.4.6 dfsg1-3)

library for the computation of the Voronoi diagram (examples)

voronota (1.19.2352-1)

Voronoi diagram-based tool to find atom contacts

votca-csg (1.5-3)

VOTCA's coarse-graining engine

votca-csg-scripts (1.5-3)

VOTCA's coarse-graining scripts

votca-csg-tutorials (1.5-3)

VOTCA's coarse-graining tutorials

voxbo (1.8.5~svn1246-3 b1)

Обробка, статистичний аналіз та перегляд знімків головного мозку

vsearch (2.10.4-1)

tool for processing metagenomic sequences

wcslib-tools (6.2-2)

Command line tools utilizing wcslib

wcstools (3.9.5-3)

Handle the WCS of a FITS image

weightwatcher (1.12 dfsg-1)

Combine maps and polygon data for astronomical image processing

weka (3.6.14-1)

Machine learning algorithms for data mining tasks

wigeon (20101212 dfsg1-2)

reimplementation of the Pintail 16S DNA anomaly detection utility

wise (2.4.1-21)

comparison of biopolymers, like DNA and protein sequences

wsclean (2.6-1 b3)

Fast generic widefield interferometric imager

wxastrocapture (1.8.1 git20140821 dfsg-2)

Windows linuX Astronomy Capture

x13as (1.1-B39-1) [non-free]

seasonal adjustment software for modeling time series

xbs (0-10 b1)

3-d models and movies of molecules

xcas (1.4.9.69 dfsg1-2)

Computer Algebra System - console and graphical calculator

xdrawchem (1:1.10.2.1-2)

Редактор хімічних структур та реакцій

xflr5 (6.09.06-2 b3)

analysis tool for airfoils

xfoil (6.99.dfsg 1-1)

program for the design and analysis of subsonic airfoils

xmakemol (5.16-9 b1)

program for visualizing atomic and molecular systems

xmakemol-gl (5.16-9 b1)

program for visualizing atomic and molecular systems (OpenGL)

xmds2 (2.2.3 dfsg-15)

eXtensible Multi-Dimensional Simulator

xpa-tools (2.1.18-4)

Tools for seamless communication between Unix programs

xplot (1.19-9 b2)

simple on-screen x-y column data plotter

xplot-xplot.org (0.90.7.1-4)

fast tool to graph and visualize lots of data

xppaut (6.11b 1.dfsg-1 b2)

Phase Plane Plus Auto: Solves many kinds of equations

xtide-coastline (20020202-1)

coastline data for xtide

xtide-data (20100529-1)

Harmonics data for xtide

xtide-data-nonfree (20100529-1) [non-free]

Harmonics data for xtide (Canada, Netherlands, Germany and UK)

xyscan (4.30-2 b2)

data thief for scientists

yade (2019.01a-2)

Platform for discrete element modeling

yagv (0.4~20130422.r5bd15ed dfsg-4)

yet another G-code viewer

yaha (0.1.83-1)

find split-read mappings on single-end queries

yale (5.0.95-2) [non-free]

stellar data set from the Yale Bright Star Catalog

yorick (2.2.04 dfsg1-10)

interpreted language and scientific graphics

yorick-av (0.0.5-1 b1)

write movies from Yorick in various formats

yorick-cubeview (2.2-2)

3D FITS data viewer specialized in spectro-imaging

yorick-curses (0.1-6 b2)

interface to the (n)curses library for the Yorick language

yorick-data (2.2.04 dfsg1-10)

interpreted library for the Yorick language

yorick-dev (2.2.04 dfsg1-10)

development files for the Yorick interpreted language

yorick-full (2.2.04 dfsg1 full)

full installation of the Yorick interpreter and add-ons

yorick-gl (1.1 cvs20070922 dfsg-6.1)

OpenGL 3D graphics support for the Yorick language

yorick-gy (0.0.5-1)

GObject introspection and Gtk bindings for Yorick

yorick-gyoto (1.3.1-1)

General relativistic geodesic integration for the Yorick language

yorick-hdf5 (0.8.0-8 b1)

Hierarchical Data Format 5 interface for the Yorick language

yorick-imutil (0.5.7-3)

fast image manipulation routines for the Yorick language

yorick-mira (1.1.0 git20170124.3bd1c3~dfsg1-2)

optical interferometry image reconstruction within Yorick

yorick-ml4 (0.6.0-3)

Matlab file format support for the Yorick language

yorick-mpeg (0.1-3)

MPEG output support for the Yorick language

yorick-mpy-common (2.2.04 dfsg1-10)

Message Passing Yorick (common files)

yorick-mpy-mpich2 (2.2.04 dfsg1-10)

Message Passing Yorick (MPICH2 build)

yorick-mpy-openmpi (2.2.04 dfsg1-10)

Message Passing Yorick (OpenMPI build)

yorick-optimpack (1.3.2 dfsg 1.4.0-1)

optimization of large scale problems for the Yorick language

yorick-soy (1.4.0-3)

sparse matrix operations for the Yorick language

yorick-spydr (0.8.2-3)

FITS image display and simple analysis

yorick-svipc (0.16-3)

interprocess communication (shared memory...) for Yorick

yorick-yao (5.4.0-1)

Yorick-based adaptive optics system simulator

yorick-yeti (6.4.0-1)

utility plugin for the Yorick language

yorick-yeti-fftw (6.4.0-1)

FFT plugin for the Yorick language

yorick-yeti-regex (6.4.0-1)

POSIX regular expressions for the Yorick language

yorick-yeti-tiff (6.4.0-1)

TIFF image format input for the Yorick language

yorick-ygsl (1.2.1-1 b1)

GSL special functions plugin for the Yorick language

yorick-ynfft (1.0.3-1)

nonequispaced fast Fourier transform for Yorick

yorick-yutils (1.5.2-1)

various utilities for the Yorick language

yorick-z (1.2.0 cvs20080115-5 b2)

zlib, jpeg and png support for the Yorick language

z3 (4.4.1-1~deb10u1)

theorem prover from Microsoft Research

z88 (13.0.0 dfsg2-6)

Програма скінченно-елементного аналізу — виконавчі файли

z88-data (13.0.0 dfsg2-6)

Finite Element Analysis Program - data

zalign (0.9.1-4)

parallel local alignment of biological sequences

zegrapher (3.0.2-1)

plotting mathematical functions and sequences on the plane

zimpl (3.3.6-1)

mathematical modeling language for optimization problems

ztex-bmp (20120314-2)

universal macro processor