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[ Source: kallisto  ]

Пакунок: kallisto (0.46.2 dfsg-2)

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near-optimal RNA-Seq quantification

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools.

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Архітектура Розмір пакунка Розмір після встановлення Файли
amd64 236.4 kB706.0 kB [список файлів]
arm64 211.4 kB626.0 kB [список файлів]
armel 203.0 kB600.0 kB [список файлів]
armhf 210.7 kB456.0 kB [список файлів]
i386 256.5 kB740.0 kB [список файлів]
mips64el 211.9 kB774.0 kB [список файлів]
mipsel 218.3 kB758.0 kB [список файлів]
ppc64el 237.3 kB786.0 kB [список файлів]
s390x 215.3 kB714.0 kB [список файлів]