Пакунок: ea-utils (1.1.2 dfsg-6)

Links for ea-utils

Debian Resources:

Download Source Package ea-utils:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Tim Booth (QA Page)
Andreas Tille (QA Page)

External Resources:

Homepage [expressionanalysis.github.io]

Similar packages:

command-line tools for processing biological sequencing data

Ea-utils provides a set of command-line tools for processing biological sequencing data, barcode demultiplexing, adapter trimming, etc.

Primarily written to support an Illumina based pipeline - but should work with any FASTQs.

Main Tools are:

 * fastq-mcf

Scans a sequence file for adapters, and, based on a log-scaled threshold, determines a set of clipping parameters and performs clipping. Also does skewing detection and quality filtering.

 * fastq-multx

Demultiplexes a fastq. Capable of auto-determining barcode id's based on a master set fields. Keeps multiple reads in-sync during demultiplexing. Can verify that the reads are in-sync as well, and fail if they're not.

 * fastq-join

Similar to audy's stitch program, but in C, more efficient and supports some automatic benchmarking and tuning. It uses the same "squared distance for anchored alignment" as other tools.

 * varcall

Takes a pileup and calculates variants in a more easily parameterized manner than some other tools.

Інші пакунки пов'язані з ea-utils

depends

recommends

suggests

enhances

dep: libc6 (>= 2.29)

Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
dep: libgcc-s1 (>= 3.0) [not armhf, i386, mipsel]

Допоміжна бібліотека GCC

dep: libgcc-s1 (>= 3.5) [armhf]

dep: libgcc-s1 (>= 4.2) [i386, mipsel]
dep: libgsl25 (>= 2.6)

GNU Scientific Library (GSL) -- library package
dep: libstdc 6 (>= 5.2)

Стандартна бібліотека C GNU, версії 3
dep: r-base-core

GNU R core of statistical computation and graphics system
dep: r-cran-formula

GNU R package for extended model formulas
dep: r-cran-getopt

GNU R package providing command-line parsing functionality
dep: r-cran-ggplot2

implementation of the Grammar of Graphics
dep: r-cran-hmisc

GNU R miscellaneous functions by Frank Harrell
dep: r-cran-lattice

GNU R package for 'Trellis' graphics
dep: r-cran-survival

GNU R package for survival analysis
dep: zlib1g (>= 1:1.2.3.3)

Бібліотека стискання даних (виконавчий модуль)

rec: med-config (>= 2.1)

Debian Med general config package

Завантажити ea-utils

Завантаження для всіх доступних архітектур
Архітектура	Розмір пакунка	Розмір після встановлення	Файли
amd64	214.0 kB	740.0 kB	[список файлів]
arm64	149.9 kB	532.0 kB	[список файлів]
armhf	146.2 kB	417.0 kB	[список файлів]
i386	226.0 kB	749.0 kB	[список файлів]
mips64el	214.6 kB	853.0 kB	[список файлів]
mipsel	216.7 kB	809.0 kB	[список файлів]
ppc64el	176.9 kB	916.0 kB	[список файлів]
s390x	151.2 kB	580.0 kB	[список файлів]