[ Source: r-bioc-genomicfeatures ]
Пакунок: r-bioc-genomicfeatures (1.50.4 dfsg-1)
Links for r-bioc-genomicfeatures
Debian Resources:
Download Source Package r-bioc-genomicfeatures:
- [r-bioc-genomicfeatures_1.50.4 dfsg-1.dsc]
- [r-bioc-genomicfeatures_1.50.4 dfsg.orig.tar.xz]
- [r-bioc-genomicfeatures_1.50.4 dfsg-1.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [bioconductor.org]
Similar packages:
GNU R tools for making and manipulating transcript centric annotations
A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.
Інші пакунки пов'язані з r-bioc-genomicfeatures
|
|
|
|
-
- dep: r-api-4.0
- virtual package provided by r-base-core
-
- dep: r-api-bioc-3.16
- virtual package provided by r-bioc-biocgenerics
-
- dep: r-base-core (>= 4.2.2.20221110-2)
- GNU R core of statistical computation and graphics system
-
- dep: r-bioc-annotationdbi (>= 1.41.4)
- GNU R Annotation Database Interface for BioConductor
-
- dep: r-bioc-biobase (>= 2.15.1)
- base functions for Bioconductor
-
- dep: r-bioc-biocgenerics (>= 0.1.0)
- generic functions for Bioconductor
-
- dep: r-bioc-biocio
- standard input and output for Bioconductor packages
-
- dep: r-bioc-biomart (>= 2.17.1)
- GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
-
- dep: r-bioc-biostrings (>= 2.47.6)
- GNU R string objects representing biological sequences
-
- dep: r-bioc-genomeinfodb (>= 1.34.7)
- BioConductor utilities for manipulating chromosome identifiers
-
- dep: r-bioc-genomicranges (>= 1.31.17)
- BioConductor representation and manipulation of genomic intervals
-
- dep: r-bioc-iranges (>= 2.13.23)
- GNU R low-level containers for storing sets of integer ranges
-
- dep: r-bioc-rtracklayer (>= 1.51.5)
- GNU R interface to genome browsers and their annotation tracks
-
- dep: r-bioc-s4vectors (>= 0.17.29)
- BioConductor S4 implementation of vectors and lists
-
- dep: r-bioc-xvector (>= 0.19.7)
- BioConductor representation and manpulation of external sequences
-
- dep: r-cran-dbi
- GNU R package providing a generic database interface
-
- dep: r-cran-rcurl
- GNU R General network (HTTP/FTP/...) client interface
-
- dep: r-cran-rsqlite (>= 2.0)
- Database Interface R driver for SQLite
-
- sug: r-bioc-annotationfilter
- facilities for filtering Bioconductor annotation resources
-
- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
-
- sug: r-bioc-bsgenome
- BioConductor infrastructure for Biostrings-based genome data packages
-
- sug: r-bioc-ensembldb
- GNU R utilities to create and use an Ensembl based annotation database
-
- sug: r-bioc-genomicalignments (>= 1.15.7)
- BioConductor representation and manipulation of short genomic alignments
-
- sug: r-bioc-org.hs.eg.db
- genome-wide annotation for Human
-
- sug: r-bioc-rsamtools
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
-
- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
-
- sug: r-cran-markdown
- GNU R package providing R bindings to the Sundown Markdown rendering library
-
- sug: r-cran-runit
- GNU R package providing unit testing framework
Завантажити r-bioc-genomicfeatures
| Архітектура | Розмір пакунка | Розмір після встановлення | Файли |
|---|---|---|---|
| all | 1,636.6 kB | 4,552.0 kB | [список файлів] |