Paket: cufflinks (2.2.1 dfsg.1-10) [non-free]

Länkar för cufflinks

Debianresurser:

Hämta källkodspaketet cufflinks:

Ansvariga:

Debian Med Packaging Team (QA-sida, E-postarkiv)
Alexandre Mestiashvili (QA-sida)
Andreas Tille (QA-sida)
Charles Plessy (QA-sida)

Externa resurser:

Hemsida [cufflinks.cbcb.umd.edu]

Liknande paket:

Transcript assembly, differential expression and regulation for RNA-Seq

Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.

This package provides the binary of cufflinks and associated tools, i.e. compress_gtf, cuffcompare, cuffdiff, cuffmerge, cuffnorm, cuffquant and gtf_to_sam.

Märken: Biologi: Nucleic Acids, Field: Biologi, field::biology:bioinformatics, implemented-in::c , Role: Program, Works with: Biological Sequence

Andra paket besläktade med cufflinks

beror

rekommenderar

föreslår

enhances

dep: libboost-serialization1.83.0 (>= 1.83.0)

serialization library for C
dep: libboost-thread1.83.0 (>= 1.83.0)

portable C multi-threading
dep: libc6 (>= 2.38)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libgcc-s1 (>= 4.1)

GCC stödbibliotek
dep: libstdc 6 (>= 14)

GNU standardbibliotek v3 för C
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: zlib1g (>= 1:1.2.3.3)

Kompressionsbibliotek - körtidspaket

rec: gffread

GFF/GTF format conversions, region filtering, FASTA sequence extraction

enh: tophat

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Arkitektur	Paketstorlek	Installerad storlek	Filer
s390x	1.494,6 kbyte	11.938,0 kbyte	[filförteckning]