Paket: bowtie (1.3.1-3)

Länkar för bowtie

Debianresurser:

Hämta källkodspaketet bowtie:

Ansvariga:

Debian Med Packaging Team (QA-sida, E-postarkiv)
Steffen Moeller (QA-sida)
Andreas Tille (QA-sida)
Ognyan Kulev (QA-sida)
Stephan Struckmann (QA-sida)
Alexandre Mestiashvili (QA-sida)

Externa resurser:

Hemsida [bowtie-bio.sourceforge.net]

Liknande paket:

Ultrafast memory-efficient short read aligner

This package addresses the problem to interpret the results from the latest (2010) DNA sequencing technologies. Those will yield fairly short stretches and those cannot be interpreted directly. It is the challenge for tools like Bowtie to give a chromosomal location to the short stretches of DNA sequenced per run.

Bowtie aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).

Märken: Field: Biologi, Bioinformatics, Implemented in: implemented-in::c , interface::commandline, Role: Program, Vetenskap: science::calculation, scope::utility, Purpose: Analysing, use::comparing, works-with::biological-sequence

Andra paket besläktade med bowtie

beror

rekommenderar

föreslår

enhances

dep: libc6 (>= 2.34)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC stödbibliotek
dep: libstdc 6 (>= 13.1)

GNU standardbibliotek v3 för C
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: zlib1g (>= 1:1.2.6)

Kompressionsbibliotek - körtidspaket

sug: bowtie-examples

Examples for bowtie, the ultrafast memory-efficient short read aligner

Hämta bowtie

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Arkitektur	Paketstorlek	Installerad storlek	Filer
s390x	1.530,6 kbyte	6.969,0 kbyte	[filförteckning]