Paket: yanosim (0.1-3)

Länkar för yanosim

Debianresurser:

Hämta källkodspaketet yanosim:

Ansvariga:

Externa resurser:

Hemsida [github.com]

Liknande paket:

read simulator nanopore DRS datasets

Yanosim has three options:

1. yanosim model:

   Creates an model of mismatches, insertions and deletions
   based on an alignment of nanopore DRS reads to a
   reference. Reads should be aligned to a transcriptome
   i.e. without spliced alignment, using minimap2. They
   should have the cs tag.

2. yanosim quantify:

   Quantify the number of reads mapping to each
   transcript in a reference, so that the right number
   of reads can be simulated.

3. yanosim simulate:

   Given a model created using yanosim model, and
   per-transcript read counts created using yanosim
   simulate, simulate error-prone long-reads from the
   given fasta file.

Andra paket besläktade med yanosim

beror

rekommenderar

föreslår

enhances

dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-click

Wrapper around optparse for command line utilities - Python 3.x
dep: python3-numpy

Fast array facility to the Python 3 language
dep: python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: python3-scipy

scientific tools for Python 3

Hämta yanosim

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	9,1 kbyte	45,0 kbyte	[filförteckning]
arm64	9,1 kbyte	45,0 kbyte	[filförteckning]
armel	9,1 kbyte	45,0 kbyte	[filförteckning]
armhf	9,1 kbyte	45,0 kbyte	[filförteckning]
i386	9,1 kbyte	45,0 kbyte	[filförteckning]
mips64el	9,1 kbyte	45,0 kbyte	[filförteckning]
mipsel	9,1 kbyte	45,0 kbyte	[filförteckning]
ppc64el	9,1 kbyte	45,0 kbyte	[filförteckning]