Paket: ivar (1.3 dfsg-1)

Länkar för ivar

Debianresurser:

Hämta källkodspaketet ivar:

Ansvariga:

Externa resurser:

Hemsida [github.com]

Liknande paket:

functions broadly useful for viral amplicon-based sequencing

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates. iVar provided the following functions:

 1. trimming of primers and low-quality bases,
 2. consensus calling,
 3. variant calling - both iSNVs and insertions/deletions, and
 4. identifying mismatches to primer sequences and excluding the
    corresponding reads from alignment files.

Andra paket besläktade med ivar

beror

rekommenderar

föreslår

enhances

dep: libc6 (>= 2.29)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libgcc-s1 (>= 3.0) [ej i386, mipsel]

GCC stödbibliotek

dep: libgcc-s1 (>= 4.2) [i386, mipsel]
dep: libhts3 (>= 1.10)

C library for high-throughput sequencing data formats
dep: libstdc 6 (>= 9)

GNU standardbibliotek v3 för C

rec: samtools

processing sequence alignments in SAM, BAM and CRAM formats

Hämta ivar

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	202,9 kbyte	1.614,0 kbyte	[filförteckning]
arm64	191,3 kbyte	1.606,0 kbyte	[filförteckning]
i386	217,8 kbyte	1.617,0 kbyte	[filförteckning]
mips64el	266,0 kbyte	2.502,0 kbyte	[filförteckning]
mipsel	264,8 kbyte	2.392,0 kbyte	[filförteckning]