Paket: r-bioc-genomicfeatures (1.42.1 dfsg-1)
Länkar för r-bioc-genomicfeatures
Debianresurser:
Hämta källkodspaketet r-bioc-genomicfeatures:
- [r-bioc-genomicfeatures_1.42.1 dfsg-1.dsc]
- [r-bioc-genomicfeatures_1.42.1 dfsg.orig.tar.xz]
- [r-bioc-genomicfeatures_1.42.1 dfsg-1.debian.tar.xz]
Ansvariga:
Externa resurser:
- Hemsida [bioconductor.org]
Liknande paket:
GNU R tools for making and manipulating transcript centric annotations
A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.
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- dep: r-api-4.0
- virtuellt paket som tillhandahålls av r-base-core
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- dep: r-api-bioc-3.12
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- dep: r-base-core (>= 4.0.3-1)
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- dep: r-bioc-biobase (>= 2.15.1)
- base functions for Bioconductor
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- dep: r-bioc-biocgenerics (>= 0.1.0)
- generic functions for Bioconductor
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- dep: r-bioc-biomart (>= 2.17.1)
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- dep: r-bioc-biostrings (>= 2.47.6)
- GNU R string objects representing biological sequences
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- dep: r-bioc-genomeinfodb (>= 1.25.7)
- BioConductor utilities for manipulating chromosome identifiers
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- dep: r-bioc-genomicranges (>= 1.31.17)
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges (>= 2.13.23)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-rtracklayer (>= 1.39.7)
- GNU R interface to genome browsers and their annotation tracks
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- dep: r-bioc-s4vectors (>= 0.17.29)
- BioConductor S4 implementation of vectors and lists
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- dep: r-bioc-xvector (>= 0.19.7)
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- dep: r-cran-dbi
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- dep: r-cran-rcurl
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- dep: r-cran-rsqlite (>= 2.0)
- Database Interface R driver for SQLite
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-bsgenome
- BioConductor infrastructure for Biostrings-based genome data packages
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- sug: r-bioc-ensembldb
- GNU R utilities to create and use an Ensembl based annotation database
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- sug: r-bioc-genomicalignments (>= 1.15.7)
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- sug: r-bioc-org.hs.eg.db
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- sug: r-bioc-rsamtools
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- sug: r-cran-knitr
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- sug: r-cran-runit
- GNU R package providing unit testing framework
Hämta r-bioc-genomicfeatures
Arkitektur | Paketstorlek | Installerad storlek | Filer |
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all | 1.791,1 kbyte | 4.660,0 kbyte | [filförteckning] |