Balík: tnseq-transit (3.3.4-1)
Odkazy pre tnseq-transit
Zdroje Debian:
Stiahnuť zdrojový balík tnseq-transit:
Správcovia:
- Debian Med Packaging Team (Stránka QA, Konferencia)
- Andreas Tille (Stránka QA)
- Étienne Mollier (Stránka QA)
Externé zdroje:
- Domovská stránka [saclab.tamu.edu]
Podobné balíky:
statistical calculations of essentiality of genes or genomic regions
This is a software that can be used to analyze Tn-Seq datasets. It includes various statistical calculations of essentiality of genes or genomic regions (including conditional essentiality between 2 conditions). These methods were developed and tested as a collaboration between the Sassetti lab (UMass) and the Ioerger lab (Texas A&M)
TRANSIT is capable of analyzing TnSeq libraries constructed with Himar1 or Tn5 datasets.
TRANSIT assumes you have already done pre-processing of raw sequencing files (.fastq) and extracted read counts into a .wig formatted file. The .wig file should contain the counts at all sites where an insertion could take place (including sites with no reads). For Himar1 datasets this is all TA sites in the genome. For Tn5 datasets this would be all nucleotides in the genome.
Ostatné balíky súvisiace s balíkom tnseq-transit
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- dep: bwa
- Burrows-Wheeler Aligner
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-matplotlib
- systém v Pythone na vykresľovanie v štýle podobnom Matlabu
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- dep: python3-numpy
- Fast array facility to the Python language (Python 3)
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- dep: python3-pil
- Python Imaging Library - Python3
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- dep: python3-pkg-resources
- objavovanie balíkov a prístup k zdrojom prostredníctvom pkg_resources
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- dep: python3-pubsub
- Python 3 publish-subcribe library
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- dep: python3-scipy
- vedecké nástroje pre Python 3
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- dep: python3-sklearn
- Python modules for machine learning and data mining - Python 3
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- dep: python3-statsmodels
- Python3 module for the estimation of statistical models
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- dep: python3-wxgtk4.0
- Python 3 interface to the wxWidgets Cross-platform C GUI toolkit
Stiahnuť tnseq-transit
| Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
|---|---|---|---|
| s390x | 29,212.4 kB | 163,131.0 kB | [zoznam súborov] |