Balík: vienna-rna (2.6.4 dfsg-1 a iné) [non-free]

Odkazy pre vienna-rna

Zdroje Debian:

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Správcovia:

Externé zdroje:

Domovská stránka [www.tbi.univie.ac.at]

Podobné balíky:

RNA sequence analysis

The Vienna RNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures. It is developed and maintained by the group of Ivo Hofacker in Vienna.

RNA secondary structure prediction through energy minimization is the most used function in the package. It provides three kinds of dynamic programming algorithms for structure prediction:

 * the minimum free energy algorithm of (Zuker & Stiegler 1981) which
   yields a single optimal structure,
 * the partition function algorithm of (McCaskill 1990) which calculates
   base pair probabilities in the thermodynamic ensemble, and the
   suboptimal folding algorithm of (Wuchty et.al 1999) which generates
   all suboptimal structures within a given energy range of the optimal
   energy.

For secondary structure comparison, the package contains several measures of distance (dissimilarities) using either string alignment or tree-editing (Shapiro & Zhang 1990). Finally, is provided an algorithm to design sequences with a predefined structure (inverse folding). The RNAforester package is a tool for aligning RNA secondary structures and it's user interface integrates to those of the tools of the Vienna RNA package.

Ostatné balíky súvisiace s balíkom vienna-rna

závisí

odporúča

navrhuje

vylepšuje

dep: libc6 (>= 2.38)

knižnica GNU C - zdieľané knižnice
tiež virtuálny balík poskytovaný balíkom libc6-udeb
dep: libdlib19.2 (>= 19.24.4 dfsg)

C toolkit for machine learning and computer vision - library
dep: libgcc-s1 (>= 3.0)

podporná knižnica GCC
dep: libgomp1 (>= 4.9)

podporná knižnica GCC OpenMP (GOMP)
dep: libgsl28 (>= 2.8 dfsg)

GNU Scientific Library (GSL) - balík knižnice
dep: libgslcblas0 (>= 2.8)

GNU Scientific Library (GSL) - balík knižnice blas
dep: liblapack3

knižnica rutín lineárnej algebry, verzia 3 - zdieľaná knižnica

alebo liblapack.so.3

virtuálny balík poskytovaný balíkom libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
dep: libmpfr6 (>= 3.1.3)

výpočty s plávajúcou desatinnou čiarkou s viacnásobnou presnosťou
dep: libstdc 6 (>= 13.1)

štandardná knižnica C GNU v3

rec: readseq

Conversion between sequence formats

Stiahnuť vienna-rna

Stiahnuť pre všetky dostupné architektúry
Architektúra	Verzia	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
s390x	2.6.4 dfsg-1 b1	3,326.6 kB	106,433.0 kB	[zoznam súborov]