Balík: augustus (3.4.0 dfsg2-3) [debports]
Odkazy pre augustus
Zdroje Debian:
Stiahnuť zdrojový balík :
NenájdenýSprávcovia:
Externé zdroje:
- Domovská stránka [bioinf.uni-greifswald.de]
Podobné balíky:
gene prediction in eukaryotic genomes
AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences that is based on a generalized hidden Markov model (HMM), a probabilistic model of a sequence and its gene structure. After learning gene structures from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new sequence and annotates it with the regions of identified genes. External hints, e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide and improve the gene finding process. The result is the set of most likely gene structures that comply with all given user constraints, if such gene structures exist. AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts to train custom models using annotated genomes.
Ostatné balíky súvisiace s balíkom augustus
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- dep: augustus-data
- data files for AUGUSTUS
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- dep: libbamtools2.5.1 (>= 2.5.1 dfsg)
- Balík nie je dostupný
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- dep: libboost-iostreams1.74.0 (>= 1.74.0)
- knižnica Boost.Iostreams
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- dep: libc6.1 (>= 2.32)
- knižnica GNU C - zdieľané knižnice
tiež virtuálny balík poskytovaný balíkom libc6.1-udeb
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- dep: libcolamd2 (>= 1:4.5.2)
- Balík nie je dostupný
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- dep: libgcc-s1 (>= 4.2)
- podporná knižnica GCC
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- dep: libgsl25 (>= 2.6)
- Balík nie je dostupný
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libmariadb3 (>= 3.0.0)
- databáza MariaDB - klientská knižnica
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- dep: libmysql 3v5 (>= 3.2.5-1~)
- MySQL C library bindings (runtime)
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- dep: libsqlite3-0 (>= 3.5.9)
- zdieľaná knižnica SQLite 3
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- dep: libstdc 6 (>= 9)
- štandardná knižnica C GNU v3
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- dep: libunwind8
- nnižnica na určenie na určenie postupnosti volania programu - dynamické súbory
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- rec: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- sug: cdbfasta
- Constant DataBase indexing and retrieval tools for multi-FASTA files
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- sug: diamond-aligner
- accelerated BLAST compatible local sequence aligner
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- sug: libdbd-mysql-perl
- rozhranie databáz MariaDB/MySQL pre jazyk Perl 5
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- sug: libfile-which-perl
- modul Perlu na nájdenie ciest k spustiteľným programom
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- sug: libparallel-forkmanager-perl
- jednoduchý správca forkov na paralelné spracovanie pre jazyk Perl
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- sug: libyaml-perl
- YAML Ain't Markup Language
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- sug: python3-biopython
- Python3 library for bioinformatics
Stiahnuť augustus
| Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
|---|---|---|---|
| ia64 (neoficiálny port) | 2,170.0 kB | 21,090.0 kB | [zoznam súborov] |