Balík: sortmerna (2.1-5)
Odkazy pre sortmerna
Zdroje Debian:
Stiahnuť zdrojový balík sortmerna:
Správcovia:
- Debian Med Packaging Team (Stránka QA, Konferencia)
- Tim Booth (Stránka QA)
- Andreas Tille (Stránka QA)
Externé zdroje:
- Domovská stránka [bioinfo.lifl.fr]
Podobné balíky:
tool for filtering, mapping and OTU-picking NGS reads
SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. The core algorithm is based on approximate seeds and allows for fast and sensitive analyses of nucleotide sequences. The main application of SortMeRNA is filtering rRNA from metatranscriptomic data. Additional applications include OTU-picking and taxonomy assignation available through QIIME v1.9 (http://qiime.org - v1.9.0-rc1). SortMeRNA takes as input a file of reads (fasta or fastq format) and one or multiple rRNA database file(s), and sorts apart rRNA and rejected reads into two files specified by the user. Optionally, it can provide high quality local alignments of rRNA reads against the rRNA database. SortMeRNA works with Illumina, 454, Ion Torrent and PacBio data, and can produce SAM and BLAST-like alignments.
Ostatné balíky súvisiace s balíkom sortmerna
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- dep: libc6 (>= 2.29)
- knižnica GNU C - zdieľané knižnice
tiež virtuálny balík poskytovaný balíkom libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [amd64]
- podporná knižnica GCC
- dep: libgcc-s1 (>= 4.2) [i386]
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- dep: libgomp1 (>= 6)
- podporná knižnica GCC OpenMP (GOMP)
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- dep: libstdc 6 (>= 5.2)
- štandardná knižnica C GNU v3
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- dep: sse2-support [i386]
- prevent installation on processors without required instructions
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- rec: python3
- interactive high-level object-oriented language (default python3 version)
Stiahnuť sortmerna
| Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
|---|---|---|---|
| amd64 | 5,335.7 kB | 47,219.0 kB | [zoznam súborov] |
| i386 | 5,340.3 kB | 47,257.0 kB | [zoznam súborov] |