[ Zdroj: r-bioc-tcgabiolinks ]
Balík: r-bioc-tcgabiolinks (2.25.3 dfsg-1)
Odkazy pre r-bioc-tcgabiolinks
Zdroje Debian:
Stiahnuť zdrojový balík r-bioc-tcgabiolinks:
- [r-bioc-tcgabiolinks_2.25.3 dfsg-1.dsc]
- [r-bioc-tcgabiolinks_2.25.3 dfsg.orig.tar.xz]
- [r-bioc-tcgabiolinks_2.25.3 dfsg-1.debian.tar.xz]
Správcovia:
Externé zdroje:
- Domovská stránka [bioconductor.org]
Podobné balíky:
GNU R/Bioconductor package for integrative analysis with GDC data
The aim of TCGAbiolinks is:
1) facilitate the GDC open-access data retrieval, 2) prepare the data using the appropriate pre-processing strategies, 3) provide the means to carry out different standard analyses and 4) to easily reproduce earlier research results.In more detail, the package provides multiple methods for analysis (e.g., differential expression analysis, identifying differentially methylated regions) and methods for visualization (e.g., survival plots, volcano plots, starburst plots) in order to easily develop complete analysis pipelines.
Ostatné balíky súvisiace s balíkom r-bioc-tcgabiolinks
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- dep: r-api-4.0
- virtuálny balík poskytovaný balíkom r-base-core
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- dep: r-base-core (>= 4.2.2.20221110-1)
- jadro GNU R na štatistické výpočty a grafický systém
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- dep: r-bioc-biomart
- GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
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- dep: r-bioc-genomicranges
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-s4vectors
- BioConductor S4 implementation of vectors and lists
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- dep: r-bioc-summarizedexperiment (>= 1.4.0)
- BioConductor assay container
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- dep: r-bioc-tcgabiolinksgui.data (>= 1.15.1)
- Data for the TCGAbiolinksGUI package
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- dep: r-cran-data.table
- GNU R - rozšírenie Data.frame
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- dep: r-cran-downloader (>= 0.4)
- GNU R package for downloading files over http and https
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- dep: r-cran-dplyr
- GNU R grammar of data manipulation
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- dep: r-cran-ggplot2
- implementácia Gramatiky grafiky
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- dep: r-cran-httr (>= 1.2.1)
- GNU R tools for working with URLs and HTTP
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- dep: r-cran-jsonlite (>= 1.0.0)
- robustný, výkonný nástroj na tvorbu a spracovanie JSON pre R
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- dep: r-cran-knitr
- balík GNU R na dynamickú tvorbu zostáv pomocou Literate Programming
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- dep: r-cran-plyr
- nástroje na rozdeľovanie, aplikovanie a kombinovanie dát
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- dep: r-cran-purrr
- GNU R functional programming tools
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- dep: r-cran-r.utils
- GNU R various programming utilities
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- dep: r-cran-readr
- GNU R package to read rectangular text data
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- dep: r-cran-rvest (>= 0.3.0)
- Easily Harvest (Scrape) Web Pages
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- dep: r-cran-stringr (>= 1.0.0)
- uľahčenie práce s reťazcami
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- dep: r-cran-tibble
- GNU R Simple Data Frames
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- dep: r-cran-tidyr
- GNU R package to easily tidy data
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- dep: r-cran-xml (>= 3.98.0)
- GNU R package for XML parsing and generation
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- dep: r-cran-xml2
- GNU R XML parser
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- sug: r-bioc-affy
- BioConductor methods for Affymetrix Oligonucleotide Arrays
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- sug: r-bioc-annotationhub
- GNU R client to access AnnotationHub resources
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- sug: r-bioc-biobase
- base functions for Bioconductor
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-complexheatmap
- make complex heatmaps using GNU R
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- sug: r-bioc-consensusclusterplus
- GNU R determining cluster count and membership
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- sug: r-bioc-edaseq
- GNU R exploratory data analysis and normalization for RNA-Seq
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- sug: r-bioc-edger
- Empirical analysis of digital gene expression data in R
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- sug: r-bioc-experimenthub
- BioConductor client to access ExperimentHub resources
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- sug: r-bioc-genefilter
- methods for filtering genes from microarray experiments
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- sug: r-bioc-limma
- linear models for microarray data
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- sug: r-bioc-sva
- GNU R Surrogate Variable Analysis
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- sug: r-cran-circlize
- Circular Visualization
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- sug: r-cran-devtools
- Tools to Make Developing R Packages Easier
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- sug: r-cran-doparallel
- GNU R foreach parallel adaptor for the parallel package
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- sug: r-cran-ggrepel (>= 0.6.3)
- auto-position non-overlapping text labels in plots
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- sug: r-cran-gridextra
- GNU R - balík s rozšíreniami balíka grid
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- sug: r-cran-igraph
- GNU R network analysis and visualization
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- sug: r-cran-jpeg
- Read and write JPEG images
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- sug: r-cran-parmigene
- Parallel Mutual Information to establish Gene Networks
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- sug: r-cran-png
- balík GNU R na čítanie a zápis obrázkov PNG
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
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- sug: r-cran-scales
- škálovacie funkcie na vizualizáciu
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- sug: r-cran-seurat
- Tools for Single Cell Genomics
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- sug: r-cran-survival
- balík GNU R na analýzu prežitia
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- sug: r-cran-survminer
- GNU R drawing survival curves using 'ggplot2'
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- sug: r-cran-testthat
- GNU R testsuite
Stiahnuť r-bioc-tcgabiolinks
| Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
|---|---|---|---|
| all | 6,354.4 kB | 6,791.0 kB | [zoznam súborov] |