Пакет: r-bioc-tcgabiolinks (2.32.0 dfsg-2)

Ссылки для r-bioc-tcgabiolinks

Ресурсы Debian:

Исходный код r-bioc-tcgabiolinks:

Сопровождающие:

Внешние ресурсы:

Сайт [bioconductor.org]

Подобные пакеты:

GNU R/Bioconductor package for integrative analysis with GDC data

The aim of TCGAbiolinks is:

 1) facilitate the GDC open-access data retrieval,
 2) prepare the data using the appropriate pre-processing strategies,
 3) provide the means to carry out different standard analyses and
 4) to easily reproduce earlier research results.

In more detail, the package provides multiple methods for analysis (e.g., differential expression analysis, identifying differentially methylated regions) and methods for visualization (e.g., survival plots, volcano plots, starburst plots) in order to easily develop complete analysis pipelines.

Другие пакеты, относящиеся к r-bioc-tcgabiolinks

зависимости

рекомендации

предложения

enhances

dep: r-api-4.0

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dep: r-api-bioc-3.19

виртуальный пакет, предоставляемый r-bioc-biocgenerics
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dep: r-bioc-s4vectors

BioConductor S4 implementation of vectors and lists
dep: r-bioc-summarizedexperiment (>= 1.4.0)

BioConductor assay container
dep: r-bioc-tcgabiolinksgui.data (>= 1.15.1)

Data for the TCGAbiolinksGUI package
dep: r-cran-data.table

GNU R extension of Data.frame
dep: r-cran-downloader (>= 0.4)

GNU R package for downloading files over http and https
dep: r-cran-dplyr

GNU R grammar of data manipulation
dep: r-cran-ggplot2

implementation of the Grammar of Graphics
dep: r-cran-httr (>= 1.2.1)

GNU R tools for working with URLs and HTTP
dep: r-cran-jsonlite (>= 1.0.0)

Robust, High Performance JSON Parser and Generator for R
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dep: r-cran-plyr

tools for splitting, applying and combining data
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GNU R functional programming tools
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GNU R various programming utilities
dep: r-cran-readr

GNU R package to read rectangular text data
dep: r-cran-rvest (>= 0.3.0)

Easily Harvest (Scrape) Web Pages
dep: r-cran-stringr (>= 1.0.0)

Make it easier to work with strings
dep: r-cran-tibble

GNU R Simple Data Frames
dep: r-cran-tidyr

GNU R package to easily tidy data
dep: r-cran-xml (>= 3.98.0)

GNU R package for XML parsing and generation
dep: r-cran-xml2

GNU R XML parser

sug: r-bioc-affy

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sug: r-bioc-annotationhub

GNU R client to access AnnotationHub resources
sug: r-bioc-biobase

base functions for Bioconductor
sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
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make complex heatmaps using GNU R
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GNU R exploratory data analysis and normalization for RNA-Seq
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Empirical analysis of digital gene expression data in R
sug: r-bioc-experimenthub

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sug: r-bioc-genefilter

methods for filtering genes from microarray experiments
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linear models for microarray data
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GNU R Surrogate Variable Analysis
sug: r-cran-circlize

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sug: r-cran-devtools

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sug: r-cran-doparallel

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GNU R wrapper of the JavaScript library 'DataTables'
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auto-position non-overlapping text labels in plots
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convert R markdown documents into a variety of formats
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Scale functions for visualization
sug: r-cran-seurat

Пакет недоступен
sug: r-cran-survival

GNU R package for survival analysis
sug: r-cran-survminer

GNU R drawing survival curves using 'ggplot2'
sug: r-cran-testthat

GNU R testsuite

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