все параметры
[  buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Источник: seqtools  ]

Пакет: dotter (4.44.1 dfsg-3)

Ссылки для dotter

Screenshot

Ресурсы Debian:

Исходный код seqtools:

Сопровождающие:

Внешние ресурсы:

Подобные пакеты:

detailed comparison of two genomic sequences

Dotter is a graphical dot-matrix program for detailed comparison of two sequences. 

 * Every residue in one sequence is compared to every residue in the
   other, and a matrix of scores is calculated.
 * One sequence is plotted on the x-axis and the other on the y-axis.
 * Noise is filtered out so that alignments appear as diagonal lines.
 * Pairwise scores are averaged over a sliding window to make the score
   matrix more intelligible.
 * The averaged score matrix forms a three-dimensional landscape,
   with the two sequences in two dimensions and the height of the
   peaks in the third. This landscape is projected onto two
   dimensions using a grey-scale image - the darker grey of a peak,
   the higher the score is.
 * The contrast and threshold of the grey-scale image can be adjusted
   interactively, without having to recalculate the score matrix.
 * An Alignment Tool is provided to examine the sequence alignment that
   the grey-scale image represents.
 * Known high-scoring pairs can be loaded from a GFF file and overlaid
   onto the plot.
 * Gene models can be loaded from GFF and displayed alongside the
   relevant axis.
 * Compare a sequence against itself to find internal repeats.
 * Find overlaps between multiple sequences by making a dot-plot of all
   sequences versus themselves.
 * Run Dotter in batch mode to create large, time-consuming dot-plots as
   a background process.

Теги: Инструментарий интерфейса: GTK

Другие пакеты, относящиеся к dotter

  • зависимости
  • рекомендации
  • предложения
  • enhances

Загрузка dotter

Загрузить для всех доступных архитектур
Архитектура Размер пакета В установленном виде Файлы
i386 215,1 Кб439,0 Кб [список файлов]