Pakiet: shovill (1.1.0-7) [debports]
Odnośniki dla shovill
Zasoby systemu Debian:
Pobieranie pakietu źródłowego :
Nie znalezionoOpiekunowie:
Zasoby zewnętrzne:
- Strona internetowa [github.com]
Podobne pakiety:
Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take advantage of the pre- and post-processing the Shovill provides with those too.
Inne pakiety związane z shovill
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- dep: bwa
- Burrows-Wheeler Aligner
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- dep: flash
- Fast Length Adjustment of SHort reads
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- dep: kmc
- count kmers in genomic sequences
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- dep: lighter
- fast and memory-efficient sequencing error corrector
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- dep: megahit
- ultra-fast and memory-efficient meta-genome assembler
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- dep: perl
- praktyczny język ekstrakcji i raportowania Larry'ego Walla
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- dep: pigz
- Parallel Implementation of GZip
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- dep: pilon
- automated genome assembly improvement and variant detection tool
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- dep: samclip
- filter SAM file for soft and hard clipped alignments
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- dep: samtools
- Przetwarzanie dopasowań sekwencji w formatach SAM, BAM i CRAM
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- dep: seqtk
- Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
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- dep: skesa
- strategic Kmer extension for scrupulous assemblies
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- dep: spades
- genome assembler for single-cell and isolates data sets
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- dep: trimmomatic
- flexible read trimming tool for Illumina NGS data
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- dep: velvet
- Nucleic acid sequence assembler for very short reads
Pobieranie shovill
| Architektura | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|
| ppc64 (port nieoficjalny) | 13,1 KiB | 40,0 KiB | [lista plików] |