Pakiet: mptp (0.2.4-3 i inne)

Odnośniki dla mptp

Zasoby systemu Debian:

Pobieranie pakietu źródłowego mptp:

Opiekunowie:

Zasoby zewnętrzne:

Strona internetowa [github.com]

Podobne pakiety:

single-locus species delimitation

Implementation of a fast species delimitation method, based on PTP (Zhang et al. 2013) with a 64-bit multi-threaded design that handles very large datasets.

The tool mPTP can handle very large biodiversity datasets. It implements a fast method to compute the ML delimitation from an inferred phylogenetic tree of the samples. Using MCMC, it also computes the support values for each clade, which can be used to assess the confidence of the ML delimitation.

ML delimitation mPTP implements two flavours of the point-estimate solution. First, it implements the original method from (Zhang et al. 2013) where all within-species processes are modelled with a single exponential distribution. mPTP uses a dynamic programming implementation which estimates the ML delimitation faster and more accurately than the original PTP. The dynamic programming implementation has similar properties as (Gulek et al. 2010). See the wiki for more information. The second method assumes a distinct exponential distribution for the branching events of each of the delimited species allowing it to fit to a wider range of empirical datasets.

MCMC method mPTP generates support values for each clades. They represent the ratio of the number of samples for which a particular node was in the between-species process, to the total number of samples.

Inne pakiety związane z mptp

wymaga

poleca

sugeruje

enhances

dep: libc6 (>= 2.34)

Biblioteka GNU C: biblioteki współdzielone
również pakiet wirtualny udostępniany przez libc6-udeb
dep: libgsl27 (>= 2.7.1)

GNU Scientific Library (GSL) -- library package

rec: bash-completion

Programowalne dopełnianie dla powłoki bash

Pobieranie mptp

Pobierz dla wszystkich dostępnych architektur
Architektura	Wersja	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	0.2.4-3 b2	80,9 KiB	286,0 KiB	[lista plików]
arm64	0.2.4-3 b2	76,0 KiB	298,0 KiB	[lista plików]
armel	0.2.4-3 b2	75,9 KiB	297,0 KiB	[lista plików]
armhf	0.2.4-3 b2	73,8 KiB	297,0 KiB	[lista plików]
i386	0.2.4-3 b2	82,4 KiB	288,0 KiB	[lista plików]
mips64el	0.2.4-3 b2	80,1 KiB	306,0 KiB	[lista plików]
mipsel	0.2.4-3 b2	79,8 KiB	304,0 KiB	[lista plików]
ppc64el	0.2.4-3 b2	83,8 KiB	362,0 KiB	[lista plików]
s390x	0.2.4-3 b2	77,5 KiB	290,0 KiB	[lista plików]