[ sid ]
[ experimental ]
[ Source: r-bioc-txdbmaker ]
Package: r-bioc-txdbmaker (1.2.1 ds-1)
Links for r-bioc-txdbmaker
Debian Resources:
Download Source Package r-bioc-txdbmaker:
- [r-bioc-txdbmaker_1.2.1 ds-1.dsc]
- [r-bioc-txdbmaker_1.2.1 ds.orig.tar.xz]
- [r-bioc-txdbmaker_1.2.1 ds-1.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [bioconductor.org]
Similar packages:
Experimental package
Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.
Tools for making TxDb objects from genomic annotations
A set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files). These tools allow the user to download the genomic locations of transcripts, exons, and CDS, for a given assembly, and to import them in a TxDb object. TxDb objects are implemented in the GenomicFeatures package, together with flexible methods for extracting the desired features in convenient formats.
Other Packages Related to r-bioc-txdbmaker
|
|
|
|
-
- dep: r-api-4.0
- Package not available
-
- dep: r-api-bioc-3.20
- virtual package provided by r-bioc-biocgenerics
-
- dep: r-bioc-annotationdbi
- GNU R Annotation Database Interface for BioConductor
-
- dep: r-bioc-biobase
- base functions for Bioconductor
-
- dep: r-bioc-biocgenerics
- generic functions for Bioconductor
-
- dep: r-bioc-biocio
- standard input and output for Bioconductor packages
-
- dep: r-bioc-biomart (>= 2.59.1)
- GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
-
- dep: r-bioc-genomeinfodb (>= 1.39.9)
- BioConductor utilities for manipulating chromosome identifiers
-
- dep: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
-
- dep: r-bioc-genomicranges
- BioConductor representation and manipulation of genomic intervals
-
- dep: r-bioc-iranges
- GNU R low-level containers for storing sets of integer ranges
-
- dep: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
-
- dep: r-bioc-s4vectors
- BioConductor S4 implementation of vectors and lists
-
- dep: r-bioc-ucsc.utils
- Low-level utilities to retrieve data from the UCSC Genome Browser
-
- dep: r-cran-dbi
- GNU R package providing a generic database interface
-
- dep: r-cran-httr
- GNU R tools for working with URLs and HTTP
-
- dep: r-cran-rjson
- GNU R package for converting between R and JSON objects
-
- dep: r-cran-rsqlite (>= 2.0)
- Database Interface R driver for SQLite
-
- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
-
- sug: r-bioc-ensembldb
- GNU R utilities to create and use an Ensembl based annotation database
-
- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
-
- sug: r-cran-rmariadb
- Database Interface and 'MariaDB' Driver
-
- sug: r-cran-runit
- GNU R package providing unit testing framework
Download r-bioc-txdbmaker
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 722.7 kB | 3,053.0 kB | [list of files] |