[ ソース: resfinder ]
パッケージ: resfinder (3.2-3)
resfinder に関するリンク
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外部の資源:
- ホームページ [bitbucket.org]
類似のパッケージ:
identify acquired antimicrobial resistance genes
ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria.
ResFinder that uses BLAST for identification of acquired antimicrobial resistance genes in whole-genome data. As input, the method can use both pre-assembled, complete or partial genomes, and short sequence reads from four different sequencing platforms. The method was evaluated on 1862 GenBank files containing 1411 different resistance genes, as well as on 23 de-novo-sequenced isolates.
その他の resfinder 関連パッケージ
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- dep: ncbi-blast -legacy
- NCBI Blast legacy call script
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- dep: python3
- 対話式の高レベルオブジェクト指向言語 (デフォルト python3 バージョン)
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- dep: python3-cgecore
- Python3 module for the Center for Genomic Epidemiology
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- dep: python3-distutils
- distutils package for Python 3.x
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- dep: python3-tabulate
- pretty-print tabular data in Python3
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- dep: resfinder-db
- ResFinder database is a curated database of acquired resistance genes