[ ソース: seqtools ]
パッケージ: belvu (4.44.1 dfsg-7 など)
belvu に関するリンク
Debian の資源:
seqtools ソースパッケージをダウンロード:
- [seqtools_4.44.1 dfsg-7.dsc]
- [seqtools_4.44.1 dfsg.orig.tar.xz]
- [seqtools_4.44.1 dfsg-7.debian.tar.xz]
メンテナ:
外部の資源:
- ホームページ [www.sanger.ac.uk]
類似のパッケージ:
multiple sequence alignment viewer and phylogenetic tool
Belvu is a multiple sequence alignment viewer and phylogenetic tool with an extensive set of user-configurable modes to color residues.
* View multiple sequence alignments. * Residues can be coloured by conservation, with user-configurable cutoffs and colours. * Residues can be coloured by residue type (user-configurable). * Colour schemes can be imported or exported. * Swissprot (or PIR) entries can be fetched by double clicking. * The position in the alignment can be easily tracked. * Manual deletion of rows and columns. * Automatic editing of rows and columns based on customisable criteria: - removal of all-gap columns; - removal of all gaps; - removal of redundant sequences; - removal of a column by a user-specified percentage of gaps; - filtering of sequences by percent identity; - removal of sequences by a user-specified percentage of gaps; - removal of partial sequences (those starting or ending with gaps); and - removal of columns by conservation (with user-specified upper/lower cutoffs). * The alignment can be saved in Stockholm, Selex, MSF or FASTA format. * Distance matrices between sequences can be generated using a variety of distance metrics. * Distance matrices can be imported or exported. * Phylogenetic trees can be constructed based on various distance-based tree reconstruction algorithms. * Trees can be saved in New Hampshire format. * Belvu can perform bootstrap phylogenetic reconstruction.
その他の belvu 関連パッケージ
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- dep: libc6 (>= 2.34)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libcairo2 (>= 1.2.4)
- Cairo 二次元ベクトルグラフィックライブラリ
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- dep: libcurl4 (>= 7.16.2)
- 使いやすいクライアントサイドの URL 転送ライブラリ (OpenSSL フレーバ)
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- dep: libgbtools0 (>= 4.44.1 dfsg)
- library for visualising sequence alignments
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- dep: libglib2.0-0 (>= 2.22.0)
- C ルーチンの GLib ライブラリ
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- dep: libgtk2.0-0 (>= 2.12.0)
- GTK graphical user interface library - old version
-
- dep: libpango-1.0-0 (>= 1.14.0)
- 国際化されたテキストのレイアウトと描画
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- dep: libstdc 6 (>= 4.1.1)
- GNU 標準 C ライブラリ v3