Package: vdjtools (1.2.1 git20190311 repack-2) [non-free]

Links for vdjtools

Debian Resources:

Download Source Package vdjtools:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Steffen Moeller (QA Page)
tony mancill (QA Page)

External Resources:

Homepage [github.com]

Similar packages:

framework for post-analysis of B/T cell repertoires

VDJtools is an open-source Java/Groovy-based framework designed to facilitate analysis of immune repertoire sequencing (RepSeq) data. VDJtools computes a wide set of statistics and is able to perform various forms of cross-sample analysis. Both comprehensive tabular output and publication-ready plots are provided.

The main aims of the VDJtools Project are:

 * To ensure consistency between post-analysis methods and results
 * To save the time of bioinformaticians analyzing RepSeq data
 * To create an API framework facilitating development of new RepSeq
   analysis applications
 * To provide a simple enough command line tool so it could be used by
   immunologists and biologists with little computational background

Other Packages Related to vdjtools

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dep: default-jre

Standard Java or Java compatible Runtime
dep: libvdjtools-java

Java library of vdjtools

rec: r-cran-ape

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rec: r-cran-circlize

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rec: r-cran-ffield

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rec: r-cran-ggplot2

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rec: r-cran-gplots

GNU R package with tools for plotting data by Greg Warnes et al
rec: r-cran-gridbase

GNU R Integration of base and grid graphics
rec: r-cran-gridextra

GNU R package with extensions for the grid package
rec: r-cran-mass

GNU R package of Venables and Ripley's MASS
rec: r-cran-plotrix

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rec: r-cran-rcolorbrewer

GNU R package providing suitable color palettes
rec: r-cran-reshape

Flexibly reshape data
rec: r-cran-reshape2

Flexibly reshape data: a reboot of the reshape package
rec: r-cran-scales

Scale functions for visualization
rec: r-cran-venndiagram

Generate High-Resolution Venn and Euler Plots

Download vdjtools

Download for all available architectures
Architecture	Package Size	Installed Size	Files
all	42.2 kB	53.0 kB	[list of files]