[ Source: pycoqc ]
Package: pycoqc (2.5.2 dfsg-3)
Links for pycoqc
Debian Resources:
Download Source Package pycoqc:
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
computes metrics and generates Interactive QC plots
PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data
PycoQC relies on the sequencing_summary.txt file generated by Albacore and Guppy, but if needed it can also generates a summary file from basecalled fast5 files. The package supports 1D and 1D2 runs generated with Minion, Gridion and Promethion devices and basecalled with Albacore 1.2.1 or Guppy 2.1.3
Other Packages Related to pycoqc
|
|
|
|
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-h5py
- general-purpose Python interface to hdf5
-
- dep: python3-h5py-serial
- general-purpose Python interface to hdf5 (Python 3 serial)
-
- dep: python3-jinja2
- small but fast and easy to use stand-alone template engine
-
- dep: python3-numpy
- Fast array facility to the Python language (Python 3)
-
- dep: python3-pandas
- data structures for "relational" or "labeled" data
-
- dep: python3-plotly (>= 4.1.0)
- Python 3 plotting library for publication-quality graphs
-
- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
-
- dep: python3-scipy
- scientific tools for Python 3
-
- dep: python3-tqdm
- fast, extensible progress bar for Python 3 and CLI tool
Download pycoqc
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 35.4 kB | 194.0 kB | [list of files] |