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Source Package: paleomix (1.3.2-1)

Links for paleomix

The following binary packages are built from this source package:

paleomix: pipelines and tools for the processing of ancient and modern HTS data

adep: debhelper-compat (= 13)

Package not available
adep: dh-python

Debian helper tools for packaging Python libraries and applications
adep: python3

interactive high-level object-oriented language (default python3 version)
adep: python3-setuptools

Python3 Distutils Enhancements
adep: python3-pytest

Simple, powerful testing in Python3
adep: python3-coloredlogs

colored terminal output for Python 3's logging module
adep: python3-configargparse

replacement for argparse with config files and environment variables (Python 3)
adep: python3-ruamel.yaml

roundtrip YAML parser/emitter (Python 3 module)
adep: python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
adep: python3-setproctitle

Setproctitle implementation for Python 3
adep: default-jre-headless

Standard Java or Java compatible Runtime (headless)
adep: bowtie2

ultrafast memory-efficient short read aligner
adep: rsync

fast, versatile, remote (and local) file-copying tool
adep: examl

Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
adep: picard-tools

Command line tools to manipulate SAM and BAM files

Debian Package Source Repository (VCS: Git): https://salsa.debian.org/med-team/paleomix.git
Debian Package Source Repository (Browsable): https://salsa.debian.org/med-team/paleomix