Package: sspace (2.1.1 dfsg-7)

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scaffolding pre-assembled contigs after extension

SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension (SSPACE) is a script able to extend and scaffold pre-assembled contigs using one or more mate pairs or paired-end libraries, or even a combination.

SSPACE is built based on SSAKE. Code of SSAKE is changed to be able to extend and scaffold pre-assembled contigs for multiple paired reads libraries.

This is the free 'basic' version of SSPACE. The non-free 'standard' version is available directly from Baseclear.

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dep: perl

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dep: python3

interactive high-level object-oriented language (default python3 version)

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Architecture	Package Size	Installed Size	Files
all	1,208.3 kB	4,651.0 kB	[list of files]