Package: r-bioc-scran (1.32.0 dfsg-1 and others)

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Homepage [bioconductor.org]

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BioConductor methods for single-cell RNA-Seq data analysis

Implements functions for low-level analyses of single-cell RNA-seq data. Methods are provided for normalization of cell-specific biases, assignment of cell cycle phase, detection of highly variable and significantly correlated genes, identification of marker genes, and other common tasks in routine single-cell analysis workflows.

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dep: libblas3 [sparc64]

Basic Linear Algebra Reference implementations, shared library

or libblas.so.3

virtual package provided by libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
dep: libc6 (>= 2.27) [riscv64]

GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.29) [not alpha, ia64, riscv64, sh4]

dep: libc6 (>= 2.37) [sh4]
dep: libc6.1 (>= 2.29) [alpha]

GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.37) [ia64]
dep: libgcc-s1 (>= 3.0) [not alpha, hppa, ia64, riscv64, sh4, sparc64]

GCC támogató programkönyvtár

dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

dep: libgcc-s1 (>= 4.2) [ia64]
dep: libgcc-s4 (>= 4.1.1) [hppa]

GCC támogató programkönyvtár
dep: libgfortran5 (>= 8) [sparc64]

Runtime library for GNU Fortran applications
dep: liblapack3

Library of linear algebra routines 3 - shared version

or liblapack.so.3

virtual package provided by libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
dep: libstdc 6 (>= 11) [x32]

GNU Standard C Library v3

dep: libstdc 6 (>= 13.1) [hppa, ia64, sh4]

dep: libstdc 6 (>= 14) [not hppa, ia64, sh4, x32]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: r-api-4.0

virtual package provided by r-base-core
dep: r-api-bioc-3.16 [x32]

Package not available
dep: r-api-bioc-3.18 [hppa, ia64, sh4]

Package not available
dep: r-api-bioc-3.19 [not hppa, ia64, sh4, x32]

virtual package provided by r-bioc-biocgenerics
dep: r-base-core (>= 4.2.2.20221110-2) [x32]

GNU R core of statistical computation and graphics system
dep: r-bioc-beachmat [hppa, ia64, sh4, x32]

I/O for several formats storing matrix data

dep: r-bioc-beachmat (>= 2.20.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-biocgenerics [hppa, ia64, sh4, x32]

generic functions for Bioconductor

dep: r-bioc-biocgenerics (>= 0.50.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-biocparallel [hppa, ia64, sh4, x32]

BioConductor facilities for parallel evaluation

dep: r-bioc-biocparallel (>= 1.38.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-biocsingular [hppa, ia64, sh4, x32]

Singular Value Decomposition for Bioconductor Packages

dep: r-bioc-biocsingular (>= 1.20.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-bluster [hppa, ia64, sh4, x32]

Clustering Algorithms for Bioconductor

dep: r-bioc-bluster (>= 1.14.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-delayedarray [hppa, ia64, sh4, x32]

BioConductor delayed operations on array-like objects

dep: r-bioc-delayedarray (>= 0.30.1) [not hppa, ia64, sh4, x32]
dep: r-bioc-delayedmatrixstats [hppa, ia64, sh4, x32]

Functions on Rows and Columns of 'DelayedMatrix' Objects

dep: r-bioc-delayedmatrixstats (>= 1.26.0) [not hppa, ia64, sh4, x32]
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Empirical analysis of digital gene expression data in R

dep: r-bioc-edger (>= 4.2.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-limma [hppa, ia64, sh4, x32]

linear models for microarray data

dep: r-bioc-limma (>= 3.60.3) [not hppa, ia64, sh4, x32]
dep: r-bioc-metapod [hppa, ia64, sh4, x32]

GNU R meta-analyses on P-Values of differential analyses

dep: r-bioc-metapod (>= 1.12.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-s4vectors [hppa, ia64, sh4, x32]

BioConductor S4 implementation of vectors and lists

dep: r-bioc-s4vectors (>= 0.42.1) [not hppa, ia64, sh4, x32]
dep: r-bioc-scuttle [hppa, ia64, sh4, x32]

BioConductor single-cell RNA-Seq analysis utilities

dep: r-bioc-scuttle (>= 1.14.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-singlecellexperiment [hppa, ia64, sh4, x32]

S4 Classes for Single Cell Data

dep: r-bioc-singlecellexperiment (>= 1.26.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-summarizedexperiment [hppa, ia64, sh4, x32]

BioConductor assay container

dep: r-bioc-summarizedexperiment (>= 1.34.0) [not hppa, ia64, sh4, x32]
dep: r-cran-bh

(Virtual) GNU R package to provide BH
dep: r-cran-dqrng

GNU R fast pseudo random number generators
dep: r-cran-igraph

GNU R network analysis and visualization
dep: r-cran-matrix

GNU R package of classes for dense and sparse matrices
dep: r-cran-rcpp

GNU R package for Seamless R and C Integration
dep: r-cran-statmod

GNU R package providing algorithms and functions for statistical modeling

sug: r-bioc-biobase [hppa, ia64, sh4, x32]

base functions for Bioconductor
sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-deseq2

R package for RNA-Seq Differential Expression Analysis
sug: r-bioc-hdf5array

HDF5 backend for DelayedArray objects
sug: r-bioc-monocle [hppa, ia64, sh4, x32]

clustering, differential expression, and trajectory analysis for RNA-Seq
sug: r-bioc-residualmatrix

Creating a DelayedMatrix of Regression Residuals
sug: r-bioc-scaledmatrix

creating a DelayedMatrix of scaled and centered values using GNU R
sug: r-bioc-scater

Single-Cell Analysis Toolkit for Gene Expression Data in R
sug: r-bioc-scrnaseq

Collection of Public Single-Cell RNA-Seq Datasets
sug: r-cran-dynamictreecut

Methods for Detection of Clusters in Hierarchical Clustering
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-pheatmap

GNU R package to create pretty heatmaps
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-testthat

GNU R testsuite

Download r-bioc-scran

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.32.0 dfsg-1	982.9 kB	1,492.0 kB	[list of files]
amd64	1.32.0 dfsg-1	994.0 kB	1,409.0 kB	[list of files]
arm64	1.32.0 dfsg-1	976.7 kB	1,429.0 kB	[list of files]
hppa (unofficial port)	1.30.2 dfsg-1	968.1 kB	1,429.0 kB	[list of files]
ia64 (unofficial port)	1.30.2 dfsg-1	985.8 kB	1,683.0 kB	[list of files]
mips64el	1.32.0 dfsg-1	975.2 kB	1,533.0 kB	[list of files]
ppc64 (unofficial port)	1.32.0 dfsg-1	990.9 kB	1,561.0 kB	[list of files]
ppc64el	1.32.0 dfsg-1	989.5 kB	1,493.0 kB	[list of files]
riscv64	1.32.0 dfsg-1	990.3 kB	1,336.0 kB	[list of files]
s390x	1.32.0 dfsg-1	995.2 kB	1,436.0 kB	[list of files]
sh4 (unofficial port)	1.30.2 dfsg-1	987.2 kB	1,410.0 kB	[list of files]
sparc64 (unofficial port)	1.32.0 dfsg-1	969.0 kB	2,076.0 kB	[list of files]
x32 (unofficial port)	1.26.2 dfsg-1	964.7 kB	1,342.0 kB	[list of files]