Package: kallisto (0.48.0 dfsg-4 and others)

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Homepage [pachterlab.github.io]

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near-optimal RNA-Seq quantification

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools.

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dep: libc6 (>= 2.29) [hppa, m68k, x32]

GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.31) [sh4]

dep: libc6 (>= 2.34) [amd64, mips64el, ppc64, ppc64el, riscv64, s390x]

dep: libc6 (>= 2.38) [arm64, sparc64]
dep: libc6.1 (>= 2.33) [ia64]

GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.34) [alpha]
dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, s390x, x32]

GCC támogató programkönyvtár

dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]

dep: libgcc-s1 (>= 4.2) [ia64]
dep: libgcc-s2 (>= 4.2.1) [m68k]

GCC támogató programkönyvtár
dep: libgcc-s4 (>= 4.1.1) [hppa]

GCC támogató programkönyvtár
dep: libhts3 (>= 1.10) [alpha, hppa, ia64, m68k, sh4, x32]

C library for high-throughput sequencing data formats
dep: libhts3t64 (>= 1.17) [not alpha, hppa, ia64, m68k, sh4, x32]

C library for high-throughput sequencing data formats
dep: libstdc 6 (>= 11) [alpha, ia64]

GNU Standard C Library v3

dep: libstdc 6 (>= 13.1) [not alpha, hppa, ia64, m68k, sh4, x32]

dep: libstdc 6 (>= 6) [hppa, m68k, sh4, x32]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: zlib1g (>= 1:1.1.4)

tömörítő könyvtár - futásidejű

Download kallisto

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.48.0 dfsg-4	262.0 kB	918.0 kB	[list of files]
amd64	0.48.0 dfsg-4 b1	279.7 kB	805.0 kB	[list of files]
arm64	0.48.0 dfsg-4 b2	250.3 kB	789.0 kB	[list of files]
hppa (unofficial port)	0.46.2 dfsg-3	238.2 kB	676.0 kB	[list of files]
ia64 (unofficial port)	0.48.0 dfsg-2	347.0 kB	1,520.0 kB	[list of files]
m68k (unofficial port)	0.46.2 dfsg-3	228.3 kB	656.0 kB	[list of files]
mips64el	0.48.0 dfsg-4 b3	239.4 kB	883.0 kB	[list of files]
ppc64 (unofficial port)	0.48.0 dfsg-4 b1	280.0 kB	981.0 kB	[list of files]
ppc64el	0.48.0 dfsg-4 b1	284.1 kB	917.0 kB	[list of files]
riscv64	0.48.0 dfsg-4 b2	270.6 kB	625.0 kB	[list of files]
s390x	0.48.0 dfsg-4 b1	280.6 kB	833.0 kB	[list of files]
sh4 (unofficial port)	0.46.2 dfsg-3	282.5 kB	633.0 kB	[list of files]
sparc64 (unofficial port)	0.48.0 dfsg-4 b1	229.7 kB	1,050.0 kB	[list of files]
x32 (unofficial port)	0.46.2 dfsg-3	233.0 kB	644.0 kB	[list of files]