[ trixie ]
[ sid ]
[ experimental ]
[ Source: r-bioc-saturn ]
Package: r-bioc-saturn (1.12.0 dfsg-1)
Links for r-bioc-saturn
Debian Resources:
Download Source Package r-bioc-saturn:
- [r-bioc-saturn_1.12.0 dfsg-1.dsc]
- [r-bioc-saturn_1.12.0 dfsg.orig.tar.xz]
- [r-bioc-saturn_1.12.0 dfsg-1.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [bioconductor.org]
Similar packages:
scalable analysis of differential transcript usage for RNA-sequencing
This Bioconductor package can be used for Scalable Analysis of Differential Transcript Usage for Bulk and Single-Cell RNA-sequencing.
Applications satuRn provides a higly performant and scalable framework for performing differential transcript usage analyses. The package consists of three main functions. The first function, fitDTU, fits quasi-binomial generalized linear models that model transcript usage in different groups of interest. The second function, testDTU, tests for differential usage of transcripts between groups of interest. Finally, plotDTU visualizes the usage profiles of transcripts in groups of interest.
Other Packages Related to r-bioc-saturn
|
|
|
|
-
- dep: r-api-4.0
- virtual package provided by r-base-core
-
- dep: r-api-bioc-3.19
- virtual package provided by r-bioc-biocgenerics
-
- dep: r-bioc-biocparallel (>= 1.38.0)
- BioConductor facilities for parallel evaluation
-
- dep: r-bioc-limma (>= 3.60.4)
- linear models for microarray data
-
- dep: r-bioc-summarizedexperiment (>= 1.34.0)
- BioConductor assay container
-
- dep: r-cran-boot
- GNU R package for bootstrapping functions from Davison and Hinkley
-
- dep: r-cran-ggplot2
- implementation of the Grammar of Graphics
-
- dep: r-cran-locfdr
- GNU R computation of local false discovery rates
-
- dep: r-cran-matrix
- GNU R package of classes for dense and sparse matrices
-
- dep: r-cran-pbapply
- GNU R package providing progress bars for vectorized R functions
-
- sug: r-bioc-annotationhub (>= 3.12.0)
- GNU R client to access AnnotationHub resources
-
- sug: r-bioc-biocstyle (>= 2.32.1)
- standard styles for vignettes and other Bioconductor documents
-
- sug: r-bioc-delayedarray (>= 0.30.1)
- BioConductor delayed operations on array-like objects
-
- sug: r-bioc-dexseq (>= 1.50.0)
- GNU R inference of differential exon usage in RNA-Seq
-
- sug: r-bioc-edger (>= 4.2.1)
- Empirical analysis of digital gene expression data in R
-
- sug: r-bioc-ensembldb (>= 2.28.0)
- GNU R utilities to create and use an Ensembl based annotation database
-
- sug: r-cran-covr
- test coverage for GNU R packages
-
- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
-
- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
-
- sug: r-cran-testthat
- GNU R testsuite
Download r-bioc-saturn
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 2,948.2 kB | 3,033.0 kB | [list of files] |