Package: r-bioc-dropletutils (1.24.0 ds-2 and others)

Links for r-bioc-dropletutils

Debian Resources:

Download Source Package r-bioc-dropletutils:

Maintainers:

External Resources:

Homepage [bioconductor.org]

Similar packages:

BioConductor utilities for handling single-cell droplet data

Provides a number of utility functions for handling single-cell (RNA-seq) data from droplet technologies such as 10X Genomics. This includes data loading from count matrices or molecule information files, identification of cells from empty droplets, removal of barcode-swapped pseudo-cells, and downsampling of the count matrix.

Other Packages Related to r-bioc-dropletutils

depends

recommends

suggests

enhances

dep: libc6 (>= 2.27) [riscv64]

GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.29) [not alpha, ia64, riscv64, sh4]

dep: libc6 (>= 2.37) [sh4]
dep: libc6.1 (>= 2.29) [alpha]

GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.37) [ia64]
dep: libgcc-s1 (>= 3.0) [not alpha, hppa, ia64, riscv64, sh4, sparc64]

GCC támogató programkönyvtár

dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

dep: libgcc-s1 (>= 4.2) [ia64, sh4]
dep: libgcc-s4 (>= 4.1.1) [hppa]

GCC támogató programkönyvtár
dep: libhdf5-103-1 [x32]

HDF5 C runtime files - serial version
dep: libhdf5-103-1t64 [not x32]

HDF5 C runtime files - serial version
dep: libhdf5-cpp-103-1 (>= 1.10.5) [x32]

HDF5 - C runtime files - serial version
dep: libhdf5-cpp-103-1t64 (>= 1.10.5) [not x32]

HDF5 - C runtime files - serial version
dep: libstdc 6 (>= 11) [x32]

GNU Standard C Library v3

dep: libstdc 6 (>= 13.1) [hppa, ia64, sh4]

dep: libstdc 6 (>= 14) [not hppa, ia64, sh4, x32]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: r-api-4.0

virtual package provided by r-base-core
dep: r-api-bioc-3.16 [x32]

Package not available
dep: r-api-bioc-3.18 [hppa, ia64, sh4]

Package not available
dep: r-api-bioc-3.19 [not hppa, ia64, sh4, x32]

virtual package provided by r-bioc-biocgenerics
dep: r-base-core (>= 4.2.2.20221110-1) [x32]

GNU R core of statistical computation and graphics system
dep: r-bioc-beachmat [hppa, ia64, sh4, x32]

I/O for several formats storing matrix data

dep: r-bioc-beachmat (>= 2.20.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-biocgenerics [hppa, ia64, sh4, x32]

generic functions for Bioconductor

dep: r-bioc-biocgenerics (>= 0.50.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-biocparallel [hppa, ia64, sh4, x32]

BioConductor facilities for parallel evaluation

dep: r-bioc-biocparallel (>= 1.38.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-delayedarray [hppa, ia64, sh4, x32]

BioConductor delayed operations on array-like objects

dep: r-bioc-delayedarray (>= 0.30.1) [not hppa, ia64, sh4, x32]
dep: r-bioc-delayedmatrixstats [hppa, ia64, sh4, x32]

Functions on Rows and Columns of 'DelayedMatrix' Objects

dep: r-bioc-delayedmatrixstats (>= 1.26.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-edger [hppa, ia64, sh4, x32]

Empirical analysis of digital gene expression data in R

dep: r-bioc-edger (>= 4.2.1) [not hppa, ia64, sh4, x32]
dep: r-bioc-genomicranges [hppa, ia64, sh4, x32]

BioConductor representation and manipulation of genomic intervals

dep: r-bioc-genomicranges (>= 1.56.1) [not hppa, ia64, sh4, x32]
dep: r-bioc-hdf5array [hppa, ia64, sh4, x32]

HDF5 backend for DelayedArray objects

dep: r-bioc-hdf5array (>= 1.32.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-iranges [hppa, ia64, sh4, x32]

GNU R low-level containers for storing sets of integer ranges

dep: r-bioc-iranges (>= 2.38.1) [not hppa, ia64, sh4, x32]
dep: r-bioc-rhdf5 [hppa, ia64, sh4, x32]

BioConductor HDF5 interface to R

dep: r-bioc-rhdf5 (>= 2.48.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-rhdf5lib [hppa, ia64, sh4, x32]

GNU R hdf5 library

dep: r-bioc-rhdf5lib (>= 1.26.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-s4vectors [hppa, ia64, sh4, x32]

BioConductor S4 implementation of vectors and lists

dep: r-bioc-s4vectors (>= 0.42.1) [not hppa, ia64, sh4, x32]
dep: r-bioc-scuttle [hppa, ia64, sh4, x32]

BioConductor single-cell RNA-Seq analysis utilities

dep: r-bioc-scuttle (>= 1.14.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-singlecellexperiment [hppa, ia64, sh4, x32]

S4 Classes for Single Cell Data

dep: r-bioc-singlecellexperiment (>= 1.26.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-summarizedexperiment [hppa, ia64, sh4, x32]

BioConductor assay container

dep: r-bioc-summarizedexperiment (>= 1.34.0) [not hppa, ia64, sh4, x32]
dep: r-cran-bh

(Virtual) GNU R package to provide BH
dep: r-cran-dqrng

GNU R fast pseudo random number generators
dep: r-cran-matrix

GNU R package of classes for dense and sparse matrices
dep: r-cran-r.utils

GNU R various programming utilities
dep: r-cran-rcpp

GNU R package for Seamless R and C Integration

sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]

standard styles for vignettes and other Bioconductor documents

sug: r-bioc-biocstyle (>= 2.32.1) [not hppa, ia64, sh4, x32]
sug: r-cran-jsonlite

Robust, High Performance JSON Parser and Generator for R
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-testthat

GNU R testsuite

Download r-bioc-dropletutils

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.24.0 ds-2	393.1 kB	833.0 kB	[list of files]
amd64	1.24.0 ds-2	401.3 kB	765.0 kB	[list of files]
arm64	1.24.0 ds-2	383.7 kB	769.0 kB	[list of files]
hppa (unofficial port)	1.22.0 ds-1 b1	384.2 kB	775.0 kB	[list of files]
ia64 (unofficial port)	1.22.0 ds-1 b1	404.7 kB	1,078.0 kB	[list of files]
mips64el	1.24.0 ds-2	379.6 kB	859.0 kB	[list of files]
ppc64 (unofficial port)	1.24.0 ds-2	401.3 kB	901.0 kB	[list of files]
ppc64el	1.24.0 ds-2	400.5 kB	897.0 kB	[list of files]
riscv64	1.24.0 ds-2	400.2 kB	688.0 kB	[list of files]
s390x	1.24.0 ds-2	401.7 kB	785.0 kB	[list of files]
sh4 (unofficial port)	1.22.0 ds-1 b1	400.3 kB	760.0 kB	[list of files]
sparc64 (unofficial port)	1.24.0 ds-2	374.6 kB	1,416.0 kB	[list of files]
x32 (unofficial port)	1.18.1 ds-1	380.4 kB	693.0 kB	[list of files]