[ Source: r-bioc-dada2 ]
Package: r-bioc-dada2 (1.32.0 dfsg-1 and others)
Links for r-bioc-dada2
Debian Resources:
Download Source Package r-bioc-dada2:
- [r-bioc-dada2_1.32.0 dfsg-1.dsc]
- [r-bioc-dada2_1.32.0 dfsg.orig.tar.xz]
- [r-bioc-dada2_1.32.0 dfsg-1.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [bioconductor.org]
Similar packages:
sample inference from amplicon sequencing data
The dada2 package contributes to software workflows to interpret sequencing data from microbiota - the relative abundance of bacterial and/or yeast, typically measured in the gut. It infers exact amplicon sequence variants (ASVs) from high-throughput amplicon sequencing data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier, and species-level assignment to 16S rRNA gene fragments by exact matching.
Other Packages Related to r-bioc-dada2
|
|
|
|
-
- dep: libc6 (>= 2.34) [x32]
- GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.38) [amd64]
-
- dep: libgcc-s1 (>= 3.0)
- GCC támogató programkönyvtár
-
- dep: libstdc 6 (>= 11) [x32]
- GNU Standard C Library v3
- dep: libstdc 6 (>= 14) [amd64]
-
- dep: libtbb12 (>= 2021.4.0) [amd64]
- parallelism library for C - runtime files
-
- dep: r-api-4.0
- virtual package provided by r-base-core
-
- dep: r-api-bioc-3.16 [x32]
- Package not available
-
- dep: r-api-bioc-3.19 [amd64]
- virtual package provided by r-bioc-biocgenerics
-
- dep: r-base-core (>= 4.2.2.20221110-1) [x32]
- GNU R core of statistical computation and graphics system
-
- dep: r-bioc-biocgenerics (>= 0.22.0)
- generic functions for Bioconductor
-
- dep: r-bioc-biostrings (>= 2.42.1)
- GNU R string objects representing biological sequences
-
- dep: r-bioc-iranges (>= 2.6.0)
- GNU R low-level containers for storing sets of integer ranges
-
- dep: r-bioc-shortread (>= 1.32.0)
- GNU R classes and methods for high-throughput short-read sequencing data
-
- dep: r-bioc-xvector (>= 0.16.0)
- BioConductor representation and manpulation of external sequences
-
- dep: r-cran-ggplot2 (>= 2.1.0)
- implementation of the Grammar of Graphics
-
- dep: r-cran-rcpp (>= 0.12.0)
- GNU R package for Seamless R and C Integration
-
- dep: r-cran-rcppparallel (>= 4.3.0)
- parallel programming tools for Rcpp
-
- dep: r-cran-reshape2 (>= 1.4.1)
- Flexibly reshape data: a reboot of the reshape package
-
- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
-
- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
-
- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
Download r-bioc-dada2
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| amd64 | 1.32.0 dfsg-1 | 2,745.5 kB | 3,148.0 kB | [list of files] |
| x32 (unofficial port) | 1.26.0 dfsg-1 | 2,721.0 kB | 3,079.0 kB | [list of files] |