[ Source: prime-phylo ]
Package: prime-phylo (1.0.11-9 and others)
Links for prime-phylo
Debian Resources:
Download Source Package prime-phylo:
Maintainers:
External Resources:
- Homepage [prime.sbc.su.se]
Similar packages:
bayesian estimation of gene trees taking the species tree into account
PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.
The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.
Other Packages Related to prime-phylo
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- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- or libblas.so.3
- virtual package provided by libatlas3-base, libblas3, libblis3-openmp, libblis3-pthread, libblis3-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libboost-mpi1.74.0 (>= 1.74.0)
- C interface to the Message Passing Interface (MPI)
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- dep: libboost-serialization1.74.0 (>= 1.74.0)
- serialization library for C
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- dep: libc6 (>= 2.29)
- GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [amd64, i386, mipsel, s390x]
- GCC támogató programkönyvtár
- dep: libgcc-s1 (>= 3.4.4) [ppc64el]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.5) [arm64, mips64el]
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- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- or liblapack.so.3
- virtual package provided by libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libopenmpi3 (>= 4.0.5)
- high performance message passing library -- shared library
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- dep: libstdc 6 (>= 9)
- GNU Standard C Library v3
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- dep: libxml2 (>= 2.7.4)
- GNOME XML könyvtár
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- sug: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- sug: mrbayes
- Bayesian Inference of Phylogeny
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- sug: muscle
- Multiple alignment program of protein sequences
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- sug: njplot
- phylogenetic tree drawing program
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- sug: phyml
- Phylogenetic estimation using Maximum Likelihood
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- sug: probalign
- multiple sequence alignment using partition function posterior probabilities
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- sug: python3-biopython
- Python3 library for bioinformatics
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- sug: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- sug: treeviewx
- Displays and prints phylogenetic trees
Download prime-phylo
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| amd64 | 1.0.11-9 b1 | 802.3 kB | 3,138.0 kB | [list of files] |
| arm64 | 1.0.11-9 b1 | 719.1 kB | 2,938.0 kB | [list of files] |
| armel | 1.0.11-9 b1 | 676.5 kB | 2,527.0 kB | [list of files] |
| armhf | 1.0.11-9 b1 | 689.1 kB | 2,007.0 kB | [list of files] |
| i386 | 1.0.11-9 b1 | 867.4 kB | 3,131.0 kB | [list of files] |
| mips64el | 1.0.11-9 b1 | 685.2 kB | 3,519.0 kB | [list of files] |
| mipsel | 1.0.11-9 b1 | 689.8 kB | 3,245.0 kB | [list of files] |
| ppc64el | 1.0.11-9 b1 | 810.2 kB | 3,882.0 kB | [list of files] |
| s390x | 1.0.11-9 b1 | 717.4 kB | 3,170.0 kB | [list of files] |