Paketti: snakemake (7.32.4-6)

Links for snakemake

Debian-palvelut:

Imuroi lähdekoodipaketti snakemake:

Ylläpitäjät:

External Resources:

Kotisivu [snakemake.readthedocs.io]

Samankaltaisia paketteja:

pythonic workflow management system

Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment.

Muut pakettiin snakemake liittyvät paketit

depends

recommends

suggests

enhances

dep: ca-certificates

Common CA certificates
dep: libjs-bootstrap

HTML, CSS and JS framework
dep: libjs-jquery

JavaScript library for dynamic web applications
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-configargparse

replacement for argparse with config files and environment variables
dep: python3-connection-pool

thread-safe connection pool for Python3
dep: python3-datrie

Super-fast, efficiently stored Trie for Python 3
dep: python3-docutils

text processing system for reStructuredText (implemented in Python 3)
dep: python3-git

Python library to interact with Git repositories
dep: python3-humanfriendly

Python3 library to make user friendly text interfaces
dep: python3-jinja2 (>= 3.0~)

small but fast and easy to use stand-alone template engine
dep: python3-jsonschema

An(other) implementation of JSON Schema
dep: python3-nbformat

Jupyter notebook format (Python 3)
dep: python3-packaging

core utilities for python3 packages
dep: python3-platformdirs

determining appropriate platform-specific directories (Python 3)
dep: python3-psutil

module providing convenience functions for managing processes (Python3)
dep: python3-pulp (>= 2.0~)

LP modeler - Python 3.x
dep: python3-ratelimiter

simple Python library for limiting the rate of operations
dep: python3-requests

elegant and simple HTTP library for Python3, built for human beings
dep: python3-retry

easy to use retry decorator
dep: python3-smart-open (>= 3.0~)

utils for streaming large files
dep: python3-stopit

Timeout control decorator and context manager for Python3
dep: python3-tabulate

pretty-print tabular data in Python3
dep: python3-throttler

easy throttling with asyncio support for Python3
dep: python3-toposort

topological sort algorithm - Python 3 module
dep: python3-wrapt

decorators, wrappers and monkey patching. - Python 3.x
dep: python3-yaml

YAML parser and emitter for Python3
dep: python3-yte

YAML template engine with Python expressions

rec: cwltool

Common Workflow Language reference implementation
rec: imagemagick

image manipulation programs -- binaries
myös näennäispaketti, jonka toteuttaa graphicsmagick-imagemagick-compat, imagemagick-7.q16
rec: python3-azure-storage

Microsoft Azure Storage Library for Python 3.x
rec: python3-biopython

Python3 library for bioinformatics
rec: python3-boto3

Python interface to Amazon's Web Services - Python 3.x
rec: python3-botocore

Low-level, data-driven core of boto 3 (Python 3)
rec: python3-dropbox

Official Dropbox API Client (Python3 version)
rec: python3-flask

micro web framework based on Werkzeug and Jinja2 - Python 3.x
rec: python3-ftputil

high-level FTP client library for Python
rec: python3-irodsclient

Client API for iRods
rec: python3-kubernetes

Kubernetes Python client - Python 3.x
rec: python3-pygments

syntax highlighting package written in Python 3
rec: python3-tz

Python3 version of the Olson timezone database
rec: python3-urllib3

HTTP library with thread-safe connection pooling for Python3
rec: python3-yappi

Yet Another Python Profiler - Python 3.x

sug: slurm-client

Slurm client side commands
sug: snakemake-doc

documentation for pythonic workflow management system

Imuroi snakemake

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	310.3 kt	1,560.0 kt	[tiedostoluettelo]