Paketti: r-bioc-annotationhub (3.12.0 dfsg-1)

Links for r-bioc-annotationhub

Debian-palvelut:

Imuroi lähdekoodipaketti r-bioc-annotationhub:

Ylläpitäjät:

External Resources:

Kotisivu [bioconductor.org]

Samankaltaisia paketteja:

GNU R client to access AnnotationHub resources

This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

Muut pakettiin r-bioc-annotationhub liittyvät paketit

depends

recommends

suggests

enhances

dep: r-api-4.0

näennäispaketti, jonka toteuttaa r-base-core
dep: r-api-bioc-3.19

näennäispaketti, jonka toteuttaa r-bioc-biocgenerics
dep: r-bioc-annotationdbi (>= 1.66.0)

GNU R Annotation Database Interface for BioConductor
dep: r-bioc-biocfilecache (>= 2.12.0)

GNU R management of files across sessions
dep: r-bioc-biocgenerics (>= 0.50.0)

generic functions for Bioconductor
dep: r-bioc-biocversion (>= 3.19.1)

set the appropriate version of Bioconductor packages
dep: r-bioc-s4vectors (>= 0.42.1)

BioConductor S4 implementation of vectors and lists
dep: r-cran-biocmanager

access the Bioconductor project package repository
dep: r-cran-curl

GNU R modern and flexible web client for R
dep: r-cran-dplyr

GNU R grammar of data manipulation
dep: r-cran-httr

GNU R tools for working with URLs and HTTP
dep: r-cran-rappdirs

GNU R application directories
dep: r-cran-rsqlite

Database Interface R driver for SQLite
dep: r-cran-yaml

Methods to convert R data to YAML and back

sug: r-bioc-biocstyle (>= 2.32.1)

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-biostrings (>= 2.72.1)

GNU R string objects representing biological sequences
sug: r-bioc-ensembldb (>= 2.28.0)

GNU R utilities to create and use an Ensembl based annotation database
sug: r-bioc-experimenthub (>= 2.12.0)

BioConductor client to access ExperimentHub resources
sug: r-bioc-genomeinfodb (>= 1.40.1)

BioConductor utilities for manipulating chromosome identifiers
sug: r-bioc-genomicranges (>= 1.56.1)

BioConductor representation and manipulation of genomic intervals
sug: r-bioc-iranges (>= 2.38.1)

GNU R low-level containers for storing sets of integer ranges
sug: r-bioc-rsamtools (>= 2.20.0)

GNU R binary alignment (BAM), variant call (BCF), or tabix file import
sug: r-bioc-rtracklayer (>= 1.64.0)

GNU R interface to genome browsers and their annotation tracks
sug: r-bioc-summarizedexperiment (>= 1.34.0)

BioConductor assay container
sug: r-bioc-variantannotation (>= 1.50.0)

BioConductor annotation of genetic variants
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-runit

GNU R package providing unit testing framework

Imuroi r-bioc-annotationhub

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