Paketti: r-bioc-gviz (1.48.0 dfsg-1)

Links for r-bioc-gviz

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Imuroi lähdekoodipaketti r-bioc-gviz:

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Kotisivu [bioconductor.org]

Samankaltaisia paketteja:

Plotting data and annotation information along genomic coordinates

Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.

Muut pakettiin r-bioc-gviz liittyvät paketit

depends

recommends

suggests

enhances

dep: r-api-4.0

näennäispaketti, jonka toteuttaa r-base-core
dep: r-api-bioc-3.19

näennäispaketti, jonka toteuttaa r-bioc-biocgenerics
dep: r-bioc-annotationdbi (>= 1.66.0)

GNU R Annotation Database Interface for BioConductor
dep: r-bioc-biobase (>= 2.64.0)

base functions for Bioconductor
dep: r-bioc-biocgenerics (>= 0.50.0)

generic functions for Bioconductor
dep: r-bioc-biomart (>= 2.60.1)

GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
dep: r-bioc-biostrings (>= 2.72.1)

GNU R string objects representing biological sequences
dep: r-bioc-biovizbase (>= 1.52.0)

GNU R basic graphic utilities for visualization of genomic data
dep: r-bioc-bsgenome (>= 1.72.0)

BioConductor infrastructure for Biostrings-based genome data packages
dep: r-bioc-ensembldb (>= 2.28.0)

GNU R utilities to create and use an Ensembl based annotation database
dep: r-bioc-genomeinfodb (>= 1.40.1)

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicalignments (>= 1.40.0)

BioConductor representation and manipulation of short genomic alignments
dep: r-bioc-genomicfeatures (>= 1.56.0)

GNU R tools for making and manipulating transcript centric annotations
dep: r-bioc-genomicranges (>= 1.56.1)

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges (>= 2.38.1)

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-rsamtools (>= 2.20.0)

GNU R binary alignment (BAM), variant call (BCF), or tabix file import
dep: r-bioc-rtracklayer (>= 1.64.0)

GNU R interface to genome browsers and their annotation tracks
dep: r-bioc-s4vectors (>= 0.42.1)

BioConductor S4 implementation of vectors and lists
dep: r-bioc-xvector (>= 0.44.0)

BioConductor representation and manpulation of external sequences
dep: r-cran-digest (>= 0.6.8)

GNU R package for 'hash digest' of R data structures
dep: r-cran-lattice

GNU R package for 'Trellis' graphics
dep: r-cran-latticeextra (>= 0.6-26)

GNU R package of additional graphical displays based on lattice
dep: r-cran-matrixstats (>= 0.8.14)

GNU R methods that apply to rows and columns of a matrix
dep: r-cran-rcolorbrewer

GNU R package providing suitable color palettes

sug: r-bioc-biocstyle (>= 2.32.1)

standard styles for vignettes and other Bioconductor documents
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-testthat

GNU R testsuite
sug: r-cran-xml2

GNU R XML parser

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