Paketti: libseqlib-dev (1.2.0 dfsg-9)

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Imuroi lähdekoodipaketti libseqlib:

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C htslib/bwa-mem/fermi interface for interrogating sequence data (dev)

C API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

This package contains the header files and static library.

Tagit: Software Development: Kirjastot, Role: Development Library

Muut pakettiin libseqlib-dev liittyvät paketit

depends

recommends

suggests

enhances

dep: libbwa-dev

Burrows-Wheeler Aligner source files
dep: libfml-dev

development headers for libfml
dep: libhts-dev

development files for the HTSlib
dep: libjsoncpp-dev

library for reading and writing JSON for C (devel files)
dep: libseqlib2 (= 1.2.0 dfsg-9)

C htslib/bwa-mem/fermi interface for interrogating sequence data
dep: libssw-dev

Development headers and static libraries for libssw
myös näennäispaketti, jonka toteuttaa libssw-dev
dep: zlib1g-dev

compression library - development

Imuroi libseqlib-dev

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