[ Source: spaln ]
Package: spaln (3.0.2 dfsg-2 and others)
Links for spaln
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External Resources:
- Homepage [github.com]
Similar packages:
splicing-aware transcript-alignment to genomic DNA
Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.
spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.
Other Packages Related to spaln
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- dep: libc6 (>= 2.39)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
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- dep: libgsl28 (>= 2.8 dfsg)
- GNU Scientific Library (GSL) -- library package
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- dep: libstdc 6 (>= 5)
- GNU Standard C Library v3
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- dep: spaln-data
- splicing-aware transcript-alignment to genomic DNA (data)
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- dep: zlib1g (>= 1:1.2.0.2)
- compression library - runtime
Download spaln
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| s390x | 3.0.2 dfsg-2 b1 | 582.8 kB | 2,061.0 kB | [list of files] |