Package: hyphy-mpi (2.5.63 dfsg-1 and others)

Links for hyphy-mpi

Debian Resources:

Download Source Package hyphy:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Andreas Tille (QA Page)
Étienne Mollier (QA Page)
Nilesh Patra (QA Page)

External Resources:

Homepage [hyphy.org]

Similar packages:

Hypothesis testing using Phylogenies (MPI version)

HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning. It features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for parallel computing environments (via message passing interface) and it can be compiled as a shared library and called from other programming environments such as Python or R. Continued development of HyPhy is currently supported in part by an NIGMS R01 award 1R01GM093939.

This package provides an executable using MPI to do multiprocessing.

Other Packages Related to hyphy-mpi

depends

recommends

suggests

enhances

dep: hyphy-common (= 2.5.60 dfsg-1) [ia64]

Hypothesis testing using Phylogenies (common files)

dep: hyphy-common (= 2.5.63 dfsg-1) [not ia64]
dep: libc6 (>= 2.38) [not alpha, ia64, sh4]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.40) [sh4]
dep: libc6.1 (>= 2.37) [ia64]

GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.38) [alpha]
dep: libcurl3-gnutls (>= 7.16.2) [ia64]

easy-to-use client-side URL transfer library (GnuTLS flavour)
dep: libcurl3t64-gnutls (>= 7.16.2) [not ia64]

easy-to-use client-side URL transfer library (GnuTLS flavour)
dep: libgcc-s1 (>= 3.0) [not armel, armhf, hppa, ia64, m68k, sh4]

GCC support library

dep: libgcc-s1 (>= 3.3.4) [sh4]

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [ia64]
dep: libgcc-s2 (>= 4.2.1) [m68k]

GCC support library
dep: libgcc-s4 (>= 4.1.1) [hppa]

GCC support library
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library
dep: libmpich12 [armel, armhf, hppa, i386, m68k, sh4]

Shared libraries for MPICH

dep: libmpich12 (>= 4.2.0) [x32]
dep: libopenmpi3t64 (>= 4.1.6) [ia64]

high performance message passing library -- shared library
dep: libopenmpi40 (>= 5.0.6) [not armel, armhf, hppa, i386, ia64, m68k, sh4, x32]

high performance message passing library -- shared library
dep: libsqlite3-0 (>= 3.5.9)

SQLite 3 shared library
dep: libstdc 6 (>= 13.1) [ia64]

GNU Standard C Library v3

dep: libstdc 6 (>= 5) [not ia64]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: zlib1g (>= 1:1.2.11.dfsg)

compression library - runtime

Download hyphy-mpi

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.5.63 dfsg-1 b1	835.9 kB	2,853.0 kB	[list of files]
amd64	2.5.63 dfsg-1 b1	1,499.9 kB	7,403.0 kB	[list of files]
arm64	2.5.63 dfsg-1 b1	796.4 kB	2,337.0 kB	[list of files]
armel	2.5.63 dfsg-1	779.2 kB	2,179.0 kB	[list of files]
armhf	2.5.63 dfsg-1	767.5 kB	1,495.0 kB	[list of files]
hppa (unofficial port)	2.5.63 dfsg-1	801.8 kB	2,159.0 kB	[list of files]
i386	2.5.63 dfsg-1	1,015.8 kB	2,627.0 kB	[list of files]
ia64 (unofficial port)	2.5.60 dfsg-1	1,061.2 kB	4,867.0 kB	[list of files]
m68k (unofficial port)	2.5.63 dfsg-1	756.1 kB	2,351.0 kB	[list of files]
mips64el	2.5.63 dfsg-1 b1	798.1 kB	2,880.0 kB	[list of files]
ppc64 (unofficial port)	2.5.63 dfsg-1 b1	888.9 kB	2,977.0 kB	[list of files]
ppc64el	2.5.63 dfsg-1 b1	912.3 kB	2,785.0 kB	[list of files]
riscv64	2.5.63 dfsg-1 b1	877.2 kB	1,765.0 kB	[list of files]
s390x	2.5.63 dfsg-1 b1	948.3 kB	2,621.0 kB	[list of files]
sh4 (unofficial port)	2.5.63 dfsg-1	924.8 kB	2,016.0 kB	[list of files]
sparc64 (unofficial port)	2.5.63 dfsg-1 b2	710.9 kB	3,110.0 kB	[list of files]
x32 (unofficial port)	2.5.63 dfsg-1	929.4 kB	2,315.0 kB	[list of files]