[ Source: bowtie ]
Package: bowtie (1.3.0 dfsg1-1)
Links for bowtie
Debian Resources:
Download Source Package bowtie:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Steffen Moeller (QA Page)
- Andreas Tille (QA Page)
- Ognyan Kulev (QA Page)
- Stephan Struckmann (QA Page)
- Alexandre Mestiashvili (QA Page)
External Resources:
- Homepage [bowtie-bio.sourceforge.net]
Similar packages:
Ultrafast memory-efficient short read aligner
This package addresses the problem to interpret the results from the latest (2010) DNA sequencing technologies. Those will yield fairly short stretches and those cannot be interpreted directly. It is the challenge for tools like Bowtie to give a chromosomal location to the short stretches of DNA sequenced per run.
Bowtie aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).
Other Packages Related to bowtie
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- dep: libc6 (>= 2.27)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libstdc 6 (>= 9)
- GNU Standard C Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.2.6)
- compression library - runtime
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- sug: bowtie-examples
- Examples for bowtie, the ultrafast memory-efficient short read aligner
Download bowtie
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 1,599.8 kB | 6,884.0 kB | [list of files] |
| arm64 | 1,232.5 kB | 6,048.0 kB | [list of files] |
| mips64el | 1,066.9 kB | 7,862.0 kB | [list of files] |
| ppc64el | 1,392.5 kB | 8,020.0 kB | [list of files] |
| s390x | 1,312.7 kB | 6,768.0 kB | [list of files] |