Paket: progressivemauve (1.2.0 4713 dfsg-5 und andere)
Links für progressivemauve
Debian-Ressourcen:
Quellcode-Paket progressivemauve herunterladen:
- [progressivemauve_1.2.0 4713 dfsg-5.dsc]
- [progressivemauve_1.2.0 4713 dfsg.orig.tar.xz]
- [progressivemauve_1.2.0 4713 dfsg-5.debian.tar.xz]
Betreuer:
Externe Ressourcen:
- Homepage [darlinglab.org]
Ähnliche Pakete:
multiple genome alignment algorithms
The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.
Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.
Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.
Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.
Mauve is developed at the University of Wisconsin.
Andere Pakete mit Bezug zu progressivemauve
|
|
|
|
-
- dep: libboost-filesystem1.83.0 (>= 1.83.0)
- Dateisystemoperationen (portable Pfade, Iterationen über Verzeichnisse, usw.) in C
-
- dep: libboost-iostreams1.83.0 (>= 1.83.0)
- Boost.Iostreams-Bibliothek
-
- dep: libboost-program-options1.83.0 (>= 1.83.0)
- C -Bibliothek für Programmoptionen
-
- dep: libc6 (>= 2.34)
- GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
-
- dep: libgcc-s1 (>= 3.5)
- GCC Support-Bibliothek
-
- dep: libgenome0 (>= 1.3.11 svn20110227.4616)
- toolkit for developing bioinformatic related software
-
- dep: libmems1t64 (>= 1.6.0 4725)
- library to support DNA string matching and comparative genomics
-
- dep: libstdc 6 (>= 13.1)
- GNU-Implementierung der Standard-C -Bibliothek (Version 3)
-
- enh: mauve-aligner
- multiple genome alignment
progressivemauve herunterladen
| Architektur | Version | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|---|
| armel | 1.2.0 4713 dfsg-5 b3 | 671,7 kB | 3.966,0 kB | [Liste der Dateien] |